Wall clock time and date at job start Sun Mar 29 2020 22:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35125 * 126.44293 * 2 1 4 4 O 1.33937 * 108.76773 * 179.75115 * 3 2 1 5 5 C 1.34913 * 109.38149 * 0.37986 * 4 3 2 6 6 C 1.46656 * 125.98454 * 179.88920 * 5 4 3 7 7 O 1.21697 * 120.00029 * 173.09631 * 6 5 4 8 8 N 1.34781 * 120.00068 * 353.37102 * 6 5 4 9 9 C 1.46494 * 119.99884 * 3.05569 * 8 6 5 10 10 C 1.46504 * 119.99797 * 183.05724 * 8 6 5 11 11 H 1.09002 * 109.47279 * 359.97438 * 10 8 6 12 12 C 1.52994 * 109.46943 * 239.99771 * 10 8 6 13 13 C 1.50699 * 109.46716 * 120.00044 * 10 8 6 14 14 H 1.07995 * 120.00632 * 359.97438 * 13 10 8 15 15 C 1.37881 * 119.99687 * 180.02562 * 13 10 8 16 16 N 1.31515 * 120.00188 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99982 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47249 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46781 * 119.99729 * 17 15 13 20 20 H 1.48500 * 109.47178 * 239.99756 * 17 15 13 21 21 C 1.36541 * 108.02614 * 359.62391 * 5 4 3 22 22 H 1.08998 * 109.46928 * 270.02021 * 1 2 3 23 23 H 1.08997 * 109.47175 * 30.02308 * 1 2 3 24 24 H 1.09007 * 109.46956 * 150.02609 * 1 2 3 25 25 H 1.08003 * 125.61759 * 359.94542 * 3 2 1 26 26 H 1.09003 * 109.47162 * 84.14251 * 9 8 6 27 27 H 1.08998 * 109.47108 * 204.14692 * 9 8 6 28 28 H 1.09001 * 109.47375 * 324.14274 * 9 8 6 29 29 H 1.09002 * 109.47152 * 300.00100 * 12 10 8 30 30 H 1.09004 * 109.47388 * 60.00255 * 12 10 8 31 31 H 1.08997 * 109.47123 * 180.02562 * 12 10 8 32 32 H 0.97000 * 119.99943 * 180.02562 * 16 15 13 33 33 H 1.08000 * 126.64743 * 180.22743 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0055 5 6 3.6260 -0.6682 0.0007 6 6 4.8379 -1.4941 0.0020 7 8 4.7510 -2.7019 0.1239 8 7 6.0482 -0.9151 -0.1263 9 6 6.1581 0.5438 -0.1997 10 6 7.2538 -1.7449 -0.1924 11 1 6.9755 -2.7964 -0.1221 12 6 8.1843 -1.3855 0.9676 13 6 7.9621 -1.4984 -1.4995 14 1 7.5548 -0.7945 -2.2101 15 6 9.1297 -2.1724 -1.7886 16 7 9.6255 -3.0300 -0.9235 17 14 10.0074 -1.8675 -3.4092 18 1 9.2504 -0.8649 -4.2011 19 1 11.3762 -1.3572 -3.1423 20 1 10.0929 -3.1384 -4.1726 21 6 2.3408 -1.1292 0.0004 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8903 -0.5135 25 1 1.9770 2.1145 -0.0008 26 1 6.1677 0.9587 0.8082 27 1 7.0815 0.8133 -0.7123 28 1 5.3069 0.9452 -0.7497 29 1 8.4627 -0.3339 0.8978 30 1 7.6720 -1.5637 1.9131 31 1 9.0815 -2.0025 0.9183 32 1 10.4471 -3.5039 -1.1268 33 1 2.0266 -2.1625 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259768558.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:02 Heat of formation + Delta-G solvation = -39.883180 kcal Electronic energy + Delta-G solvation = -16877.494037 eV Core-core repulsion = 14097.447609 eV Total energy + Delta-G solvation = -2780.046428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.68173 -40.54298 -37.33738 -35.26757 -34.70124 -32.05511 -30.86836 -28.06361 -27.74508 -27.33716 -24.86115 -22.28845 -21.92120 -20.16915 -18.57959 -18.20225 -17.69067 -17.35283 -17.01119 -16.17144 -15.82360 -14.93782 -14.51494 -14.36279 -14.15215 -13.97523 -13.91430 -13.68980 -13.50070 -13.03103 -12.78200 -12.75638 -12.70271 -12.44582 -12.24346 -12.13308 -11.25292 -11.14202 -10.68584 -10.56028 -9.66742 -9.33793 -8.17549 -6.34681 0.10667 1.39547 1.41250 1.42703 1.54313 1.74929 2.15116 2.33292 2.46936 3.10650 3.61328 3.86984 4.08734 4.30215 4.46982 4.65190 4.67738 4.73657 4.83984 4.86976 4.92151 4.98536 5.06341 5.09084 5.17656 5.40940 5.47855 5.59448 5.61182 5.90471 6.02684 6.10094 6.62902 6.71304 7.10996 7.37400 8.87622 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.041260 B = 0.005994 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.461986 B = 4670.144999 C = 4766.605806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.203 4.203 3 C -0.004 4.004 4 O -0.159 6.159 5 C -0.092 4.092 6 C 0.574 3.426 7 O -0.585 6.585 8 N -0.588 5.588 9 C 0.083 3.917 10 C 0.259 3.741 11 H 0.014 0.986 12 C -0.131 4.131 13 C -0.542 4.542 14 H 0.061 0.939 15 C 0.017 3.983 16 N -0.916 5.916 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.284 1.284 21 C -0.132 4.132 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.257 0.743 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.266 0.734 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.298 12.128 1.374 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.204 4.204 3 C -0.073 4.073 4 O -0.055 6.055 5 C -0.144 4.144 6 C 0.364 3.636 7 O -0.469 6.469 8 N -0.316 5.316 9 C -0.059 4.059 10 C 0.158 3.842 11 H 0.032 0.968 12 C -0.190 4.190 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.794 3.206 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.210 1.210 21 C -0.153 4.153 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.272 0.728 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.854 11.588 1.467 18.121 hybrid contribution 0.673 -0.598 -0.634 1.101 sum -13.181 10.990 0.833 17.182 Atomic orbital electron populations 1.20248 0.86199 1.03867 1.03170 1.20818 0.99214 0.91257 1.09144 1.25261 0.79243 1.01770 1.00998 1.84301 1.30264 1.20396 1.70522 1.21729 0.95342 0.81440 1.15865 1.17261 0.82522 0.86302 0.77563 1.90770 1.86506 1.15048 1.54589 1.48233 1.06248 1.09099 1.68013 1.21959 1.03686 0.77977 1.02290 1.18712 0.80369 0.89875 0.95261 0.96830 1.21875 1.00966 1.00941 0.95208 1.21556 1.08403 1.25534 1.02519 0.92084 1.25753 0.97643 0.94306 1.00610 1.70025 1.21689 1.27025 1.36710 0.85341 0.78387 0.77959 0.78920 1.18991 1.19735 1.20983 1.22034 0.90761 1.01384 1.01113 0.90375 0.89079 0.91566 0.72753 0.91679 0.90297 0.89583 0.93305 0.96164 0.90896 0.92447 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.39 71.24 0.74 -0.35 16 2 C -0.20 -4.49 6.14 -20.06 -0.12 -4.62 16 3 C 0.00 -0.07 12.00 67.10 0.81 0.73 16 4 O -0.16 -4.55 7.29 -5.09 -0.04 -4.58 16 5 C -0.09 -3.36 6.77 24.07 0.16 -3.20 16 6 C 0.57 26.98 7.64 86.44 0.66 27.65 16 7 O -0.59 -32.14 16.20 -4.34 -0.07 -32.21 16 8 N -0.59 -27.34 2.75 -831.54 -2.29 -29.63 16 9 C 0.08 2.97 8.56 127.77 1.09 4.07 16 10 C 0.26 14.10 2.63 44.24 0.12 14.22 16 11 H 0.01 0.88 6.90 -2.39 -0.02 0.86 16 12 C -0.13 -6.56 8.97 71.98 0.65 -5.92 16 13 C -0.54 -30.20 7.95 25.60 0.20 -29.99 16 14 H 0.06 3.32 7.43 -2.91 -0.02 3.30 16 15 C 0.02 0.93 5.30 84.66 0.45 1.38 16 16 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 17 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 C -0.13 -4.14 10.58 22.39 0.24 -3.91 16 22 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.26 2.01 8.06 -2.91 -0.02 1.99 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.08 2.91 7.11 -2.39 -0.02 2.89 16 28 H 0.09 2.74 5.41 -2.39 -0.01 2.73 16 29 H 0.05 2.21 7.67 -2.39 -0.02 2.19 16 30 H 0.02 0.92 8.14 -2.38 -0.02 0.91 16 31 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 32 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.15 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -71.58 281.09 5.97 -65.61 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.11 Total: 8.31 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.99 Total: 0.05 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -2.05 Total: -82.57 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.11 Total: -36.80 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.58 5.97 -65.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768558.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.729 kcal (2) G-P(sol) polarization free energy of solvation -71.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds