Wall clock time and date at job start Sun Mar 29 2020 22:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47217 * 2 1 4 4 H 1.08997 * 109.47844 * 305.00368 * 3 2 1 5 5 C 1.50700 * 109.47159 * 185.00094 * 3 2 1 6 6 H 1.08000 * 120.00706 * 240.00007 * 5 3 2 7 7 C 1.37883 * 119.99544 * 60.00825 * 5 3 2 8 8 N 1.31509 * 120.00325 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99747 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47506 * 59.99509 * 9 7 5 11 11 H 1.48498 * 109.47228 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47270 * 299.99746 * 9 7 5 13 13 N 1.46504 * 109.47059 * 65.00420 * 3 2 1 14 14 C 1.34776 * 120.00244 * 274.99795 * 13 3 2 15 15 O 1.21699 * 119.99631 * 0.02562 * 14 13 3 16 16 C 1.46654 * 120.00237 * 179.97438 * 14 13 3 17 17 C 1.36537 * 125.98699 * 179.97438 * 16 14 13 18 18 C 1.40366 * 106.70741 * 180.02562 * 17 16 14 19 19 C 1.50699 * 126.44500 * 179.97438 * 18 17 16 20 20 C 1.35130 * 107.11756 * 359.97438 * 18 17 16 21 21 O 1.33933 * 108.76339 * 0.02562 * 20 18 17 22 22 H 1.09006 * 109.47017 * 299.99406 * 1 2 3 23 23 H 1.08991 * 109.47657 * 59.99596 * 1 2 3 24 24 H 1.08997 * 109.47428 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46549 * 240.00202 * 2 1 3 26 26 H 1.08997 * 109.47341 * 120.00726 * 2 1 3 27 27 H 0.96995 * 120.00170 * 180.02562 * 8 7 5 28 28 H 0.97008 * 119.99683 * 95.00084 * 13 3 2 29 29 H 1.07994 * 126.64905 * 0.02562 * 17 16 14 30 30 H 1.09003 * 109.47285 * 89.99765 * 19 18 17 31 31 H 1.09007 * 109.47588 * 209.99825 * 19 18 17 32 32 H 1.09003 * 109.47223 * 329.99671 * 19 18 17 33 33 H 1.07993 * 125.62286 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8887 0.6522 7 6 4.1432 0.8784 -1.2282 8 7 3.4061 0.3368 -2.1731 9 14 6.0048 0.8812 -1.3821 10 1 6.5975 0.1472 -0.2353 11 1 6.3976 0.2168 -2.6507 12 1 6.4994 2.2814 -1.3823 13 7 1.6525 2.0974 1.2519 14 6 0.4353 2.6643 1.3672 15 8 -0.3422 2.6318 0.4314 16 6 0.0472 3.3195 2.6205 17 6 -1.1484 3.9300 2.8700 18 6 -1.0863 4.4166 4.1851 19 6 -2.1709 5.1673 4.9140 20 6 0.1288 4.0855 4.6748 21 8 0.8090 3.4247 3.7290 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8898 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8291 -0.0616 -2.9497 28 1 2.2721 2.1230 1.9978 29 1 -1.9805 4.0209 2.1877 30 1 -2.8144 4.4595 5.4366 31 1 -1.7195 5.8489 5.6351 32 1 -2.7632 5.7365 4.1976 33 1 0.4918 4.3157 5.6655 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260186478.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:14 Heat of formation + Delta-G solvation = -55.748524 kcal Electronic energy + Delta-G solvation = -16700.701013 eV Core-core repulsion = 13919.966612 eV Total energy + Delta-G solvation = -2780.734401 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.64670 -40.55424 -37.05346 -35.18473 -34.31551 -32.97718 -31.35529 -29.12346 -27.97232 -25.39812 -24.12116 -22.11427 -21.68315 -20.88360 -19.25539 -18.10966 -17.44348 -17.23975 -17.01978 -16.18281 -16.00895 -15.06851 -14.67778 -14.36754 -14.06427 -13.97370 -13.85461 -13.54468 -13.45915 -13.18760 -12.95190 -12.66903 -12.52380 -12.21592 -12.09857 -11.63577 -11.15000 -11.09821 -10.68307 -10.55480 -9.85236 -9.45763 -8.17683 -6.35567 0.11271 1.39598 1.45028 1.46979 1.54861 1.79415 2.23737 2.35825 2.60258 3.11674 3.81155 3.87533 4.09339 4.39435 4.46341 4.53678 4.68933 4.73278 4.91503 4.94920 5.03437 5.08179 5.11683 5.21985 5.39063 5.45470 5.55164 5.56837 5.72440 5.80932 5.99906 6.11840 6.68918 6.82965 7.23341 7.39882 8.87739 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038437 B = 0.005923 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.299013 B = 4726.362107 C = 5213.364488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.276 3.724 4 H 0.005 0.995 5 C -0.553 4.553 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.693 5.693 14 C 0.583 3.417 15 O -0.566 6.566 16 C -0.097 4.097 17 C -0.130 4.130 18 C -0.204 4.204 19 C -0.078 4.078 20 C -0.001 4.001 21 O -0.171 6.171 22 H 0.038 0.962 23 H 0.030 0.970 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.267 0.733 28 H 0.404 0.596 29 H 0.154 0.846 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 6.644 15.338 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.023 0.977 5 C -0.591 4.591 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.797 3.203 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.340 5.340 14 C 0.370 3.630 15 O -0.448 6.448 16 C -0.149 4.149 17 C -0.151 4.151 18 C -0.205 4.205 19 C -0.135 4.135 20 C -0.070 4.070 21 O -0.067 6.067 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.239 0.761 29 H 0.172 0.828 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -5.994 6.377 14.482 16.921 hybrid contribution 0.920 -0.094 -0.373 0.998 sum -5.074 6.283 14.108 16.256 Atomic orbital electron populations 1.21697 0.96927 0.99458 1.00215 1.21798 0.93825 0.98824 1.01573 1.18525 0.94066 0.89408 0.80686 0.97716 1.21501 0.91140 1.39523 1.06964 0.91266 1.25752 1.03460 0.94141 0.94819 1.70023 1.37222 1.37997 1.09810 0.85399 0.78849 0.78449 0.77643 1.18965 1.20907 1.19725 1.46267 1.14758 1.54886 1.18096 1.16986 0.82604 0.78450 0.84966 1.90813 1.52738 1.61988 1.39305 1.21961 0.93852 1.10733 0.88339 1.22050 0.96862 0.98310 0.97869 1.20849 0.98834 1.06485 0.94331 1.20252 0.94783 0.98980 0.99477 1.25164 0.91470 0.95616 0.94767 1.84069 1.42071 1.60026 1.20523 0.94277 0.95104 0.93158 0.90420 0.94073 0.92408 0.76134 0.82805 0.90351 0.89179 0.91370 0.72917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.51 71.98 0.61 -5.20 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.60 2.24 44.24 0.10 14.70 16 4 H 0.00 0.31 7.58 -2.39 -0.02 0.29 16 5 C -0.55 -29.91 8.73 25.60 0.22 -29.68 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -52.25 11.29 21.45 0.24 -52.01 16 9 Si 0.97 42.30 29.54 68.60 2.03 44.33 16 10 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.69 -31.10 5.02 -450.10 -2.26 -33.36 16 14 C 0.58 25.55 6.35 86.44 0.55 26.10 16 15 O -0.57 -28.33 14.00 -4.35 -0.06 -28.39 16 16 C -0.10 -3.42 7.13 24.07 0.17 -3.25 16 17 C -0.13 -3.92 10.57 22.39 0.24 -3.68 16 18 C -0.20 -4.44 6.14 -20.06 -0.12 -4.56 16 19 C -0.08 -1.06 10.39 71.24 0.74 -0.32 16 20 C 0.00 -0.02 12.00 67.10 0.81 0.78 16 21 O -0.17 -5.01 10.40 -5.07 -0.05 -5.06 16 22 H 0.04 1.77 5.64 -2.38 -0.01 1.76 16 23 H 0.03 1.51 7.84 -2.39 -0.02 1.49 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.08 4.31 5.95 -2.39 -0.01 4.30 16 26 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.40 16.16 8.30 -92.70 -0.77 15.39 16 29 H 0.15 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.26 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -67.20 282.55 4.18 -63.03 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.35 Total: 21.06 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 3.93 Total: -9.60 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -2.02 Total: -85.37 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.11 Total: -33.45 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -67.20 4.18 -63.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260186478.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.278 kcal (2) G-P(sol) polarization free energy of solvation -67.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds