Wall clock time and date at job start Sun Mar 29 2020 22:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46935 * 2 1 4 4 H 1.09002 * 109.46667 * 55.00783 * 3 2 1 5 5 C 1.50699 * 109.46944 * 175.00268 * 3 2 1 6 6 H 1.08007 * 120.00264 * 120.00458 * 5 3 2 7 7 C 1.37881 * 120.00302 * 300.00080 * 5 3 2 8 8 N 1.31517 * 119.99752 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00261 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47017 * 89.99942 * 9 7 5 11 11 H 1.48496 * 109.46907 * 210.00202 * 9 7 5 12 12 H 1.48499 * 109.46665 * 330.00080 * 9 7 5 13 13 N 1.46496 * 109.47554 * 295.00154 * 3 2 1 14 14 C 1.34777 * 119.99613 * 84.99645 * 13 3 2 15 15 O 1.21691 * 120.00306 * 0.02562 * 14 13 3 16 16 C 1.46656 * 119.99919 * 180.02562 * 14 13 3 17 17 C 1.36546 * 125.98986 * 179.71736 * 16 14 13 18 18 C 1.40370 * 106.70845 * 179.85269 * 17 16 14 19 19 C 1.50698 * 126.43788 * 180.11729 * 18 17 16 20 20 C 1.35126 * 107.11304 * 0.41220 * 18 17 16 21 21 O 1.33927 * 108.76816 * 359.74357 * 20 18 17 22 22 H 1.09006 * 109.46865 * 299.99287 * 1 2 3 23 23 H 1.08997 * 109.47670 * 59.99434 * 1 2 3 24 24 H 1.09002 * 109.47213 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46865 * 240.00713 * 2 1 3 26 26 H 1.08997 * 109.47670 * 120.00566 * 2 1 3 27 27 H 0.97001 * 120.00187 * 179.97438 * 8 7 5 28 28 H 0.96996 * 120.00516 * 265.00630 * 13 3 2 29 29 H 1.08000 * 126.64558 * 359.97438 * 17 16 14 30 30 H 1.09001 * 109.47355 * 270.31831 * 19 18 17 31 31 H 1.08996 * 109.47549 * 30.32810 * 19 18 17 32 32 H 1.09003 * 109.46796 * 150.32793 * 19 18 17 33 33 H 1.08001 * 125.61500 * 179.72275 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0050 0.8813 1.3816 10 1 6.4417 2.1142 2.0847 11 1 6.4396 -0.3098 2.1546 12 1 6.6134 0.8417 0.0276 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3668 15 8 -0.3420 2.6325 -0.4308 16 6 0.0467 3.3197 -2.6200 17 6 -1.1511 3.9251 -2.8714 18 6 -1.0872 4.4165 -4.1847 19 6 -2.1726 5.1658 -4.9138 20 6 0.1280 4.0857 -4.6743 21 8 0.8083 3.4249 -3.7287 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8294 -0.0619 2.9494 28 1 2.2717 2.1233 -1.9977 29 1 -1.9853 4.0110 -2.1908 30 1 -2.8154 4.4572 -5.4360 31 1 -2.7653 5.7349 -4.1977 32 1 -1.7218 5.8473 -5.6352 33 1 0.4907 4.3159 -5.6652 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260186481.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:17 Heat of formation + Delta-G solvation = -36.095656 kcal Electronic energy + Delta-G solvation = -16699.964208 eV Core-core repulsion = 13920.082020 eV Total energy + Delta-G solvation = -2779.882188 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.50102 -38.82957 -35.17070 -34.13051 -32.39708 -31.14025 -30.08129 -27.52031 -26.74904 -23.63592 -22.46766 -20.92286 -19.91226 -19.24197 -17.84074 -16.50227 -16.16154 -15.62047 -15.31583 -14.37038 -14.31799 -13.53405 -13.36047 -13.23199 -12.89438 -12.66701 -12.55875 -12.07495 -11.70878 -11.53982 -11.26062 -10.98775 -10.85653 -10.34969 -10.21019 -9.67927 -9.57428 -9.38321 -9.07924 -8.51878 -8.45774 -7.88121 -6.13505 -4.22983 1.38089 2.44455 2.98751 3.24981 3.31620 3.33803 3.80555 4.02429 4.36573 4.83042 4.93964 5.06715 5.18211 5.50145 5.51853 5.75547 5.78337 6.00021 6.11473 6.38194 6.44687 6.50774 6.63867 6.98133 7.03628 7.19442 7.30644 7.36962 7.60487 7.71382 7.87077 8.14675 8.57857 8.72386 8.99144 9.43788 10.91960 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038444 B = 0.005923 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.153749 B = 4726.431259 C = 5213.548571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.053 0.947 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.692 5.692 14 C 0.583 3.417 15 O -0.528 6.528 16 C -0.054 4.054 17 C -0.139 4.139 18 C -0.195 4.195 19 C -0.081 4.081 20 C -0.026 4.026 21 O -0.161 6.161 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.025 0.975 25 H 0.033 0.967 26 H 0.102 0.898 27 H 0.265 0.735 28 H 0.394 0.606 29 H 0.156 0.844 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 5.833 -12.589 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.339 5.339 14 C 0.367 3.633 15 O -0.407 6.407 16 C -0.107 4.107 17 C -0.159 4.159 18 C -0.197 4.197 19 C -0.137 4.137 20 C -0.096 4.096 21 O -0.056 6.056 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.227 0.773 29 H 0.174 0.826 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.404 5.553 -11.706 14.453 hybrid contribution 1.128 0.071 -0.360 1.186 sum -5.276 5.624 -12.067 14.320 Atomic orbital electron populations 1.21857 0.98318 0.98264 1.01217 1.21949 0.92653 0.99576 1.02515 1.18910 0.94540 0.89335 0.80537 0.92955 1.21216 0.90504 1.39191 1.06437 0.91973 1.24879 0.98707 0.94696 0.95312 1.69892 1.35189 1.37509 1.09341 0.86429 0.84707 0.77654 0.78219 1.20537 1.21041 1.19822 1.46508 1.13931 1.54481 1.18966 1.16628 0.83533 0.79223 0.83917 1.90849 1.51928 1.60610 1.37363 1.22755 0.92311 1.07313 0.88275 1.21775 0.97904 0.99901 0.96351 1.20434 0.97358 1.06175 0.95692 1.20143 0.95652 0.98703 0.99243 1.24069 0.92237 0.98987 0.94295 1.84090 1.41775 1.59201 1.20554 0.93018 0.94392 0.95623 0.94860 0.88030 0.92505 0.77320 0.82593 0.91521 0.91448 0.91727 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.15 0.32 -2.82 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.82 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -14.21 8.73 -34.44 -0.30 -14.51 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.60 11.29 55.43 0.63 -23.97 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.69 -15.09 5.02 -56.25 -0.28 -15.37 16 14 C 0.58 12.36 6.35 -12.86 -0.08 12.28 16 15 O -0.53 -12.57 14.00 5.20 0.07 -12.50 16 16 C -0.05 -0.95 7.13 -36.80 -0.26 -1.22 16 17 C -0.14 -2.15 10.57 -39.39 -0.42 -2.57 16 18 C -0.20 -2.43 6.14 -104.93 -0.64 -3.07 16 19 C -0.08 -0.71 10.39 36.00 0.37 -0.33 16 20 C -0.03 -0.31 12.00 29.63 0.36 0.04 16 21 O -0.16 -2.50 10.40 5.01 0.05 -2.45 16 22 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 23 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.39 7.77 8.29 -40.82 -0.34 7.43 16 29 H 0.16 2.32 8.06 -52.49 -0.42 1.89 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 282.55 15.07 4.26 4.26 Total: -1.00 -29.86 282.55 -5.59 -35.45 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -4.24 Total: 6.12 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.05 Total: -7.12 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.34 Total: -39.34 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.12 Total: -14.95 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.86 -5.59 -35.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260186481.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.649 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds