Wall clock time and date at job start Sun Mar 29 2020 22:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46935 * 2 1 4 4 H 1.09002 * 109.46667 * 55.00783 * 3 2 1 5 5 C 1.50699 * 109.46944 * 175.00268 * 3 2 1 6 6 H 1.08007 * 120.00264 * 120.00458 * 5 3 2 7 7 C 1.37881 * 120.00302 * 300.00080 * 5 3 2 8 8 N 1.31517 * 119.99752 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00261 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47017 * 89.99942 * 9 7 5 11 11 H 1.48496 * 109.46907 * 210.00202 * 9 7 5 12 12 H 1.48499 * 109.46665 * 330.00080 * 9 7 5 13 13 N 1.46496 * 109.47554 * 295.00154 * 3 2 1 14 14 C 1.34777 * 119.99613 * 84.99645 * 13 3 2 15 15 O 1.21691 * 120.00306 * 0.02562 * 14 13 3 16 16 C 1.46656 * 119.99919 * 180.02562 * 14 13 3 17 17 C 1.36546 * 125.98986 * 179.71736 * 16 14 13 18 18 C 1.40370 * 106.70845 * 179.85269 * 17 16 14 19 19 C 1.50698 * 126.43788 * 180.11729 * 18 17 16 20 20 C 1.35126 * 107.11304 * 0.41220 * 18 17 16 21 21 O 1.33927 * 108.76816 * 359.74357 * 20 18 17 22 22 H 1.09006 * 109.46865 * 299.99287 * 1 2 3 23 23 H 1.08997 * 109.47670 * 59.99434 * 1 2 3 24 24 H 1.09002 * 109.47213 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46865 * 240.00713 * 2 1 3 26 26 H 1.08997 * 109.47670 * 120.00566 * 2 1 3 27 27 H 0.97001 * 120.00187 * 179.97438 * 8 7 5 28 28 H 0.96996 * 120.00516 * 265.00630 * 13 3 2 29 29 H 1.08000 * 126.64558 * 359.97438 * 17 16 14 30 30 H 1.09001 * 109.47355 * 270.31831 * 19 18 17 31 31 H 1.08996 * 109.47549 * 30.32810 * 19 18 17 32 32 H 1.09003 * 109.46796 * 150.32793 * 19 18 17 33 33 H 1.08001 * 125.61500 * 179.72275 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0050 0.8813 1.3816 10 1 6.4417 2.1142 2.0847 11 1 6.4396 -0.3098 2.1546 12 1 6.6134 0.8417 0.0276 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3668 15 8 -0.3420 2.6325 -0.4308 16 6 0.0467 3.3197 -2.6200 17 6 -1.1511 3.9251 -2.8714 18 6 -1.0872 4.4165 -4.1847 19 6 -2.1726 5.1658 -4.9138 20 6 0.1280 4.0857 -4.6743 21 8 0.8083 3.4249 -3.7287 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8294 -0.0619 2.9494 28 1 2.2717 2.1233 -1.9977 29 1 -1.9853 4.0110 -2.1908 30 1 -2.8154 4.4572 -5.4360 31 1 -2.7653 5.7349 -4.1977 32 1 -1.7218 5.8473 -5.6352 33 1 0.4907 4.3159 -5.6652 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260186481.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:16 Heat of formation + Delta-G solvation = -55.811484 kcal Electronic energy + Delta-G solvation = -16700.819151 eV Core-core repulsion = 13920.082020 eV Total energy + Delta-G solvation = -2780.737131 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.64685 -40.55609 -37.05472 -35.18461 -34.31604 -32.97713 -31.35500 -29.12442 -27.97303 -25.39969 -24.12100 -22.11422 -21.68367 -20.88401 -19.25627 -18.11236 -17.44237 -17.24198 -17.02173 -16.17888 -16.00964 -15.06863 -14.68193 -14.36860 -14.06448 -13.97305 -13.85619 -13.54667 -13.45990 -13.19523 -12.92996 -12.70392 -12.52347 -12.19789 -12.09606 -11.63368 -11.14605 -11.09773 -10.68243 -10.56049 -9.85281 -9.45760 -8.18001 -6.35737 0.11285 1.39607 1.45038 1.45330 1.56253 1.79428 2.23724 2.35717 2.60188 3.11514 3.81161 3.87537 4.09355 4.39452 4.46259 4.53645 4.68921 4.73271 4.91508 4.94915 5.03397 5.08200 5.11709 5.21927 5.38997 5.45432 5.55219 5.56892 5.72387 5.80842 5.99890 6.11797 6.69017 6.82922 7.23309 7.39792 8.87649 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038444 B = 0.005923 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.153749 B = 4726.431259 C = 5213.548571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.276 3.724 4 H 0.005 0.995 5 C -0.552 4.552 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.262 1.262 13 N -0.693 5.693 14 C 0.583 3.417 15 O -0.566 6.566 16 C -0.097 4.097 17 C -0.130 4.130 18 C -0.204 4.204 19 C -0.078 4.078 20 C -0.001 4.001 21 O -0.171 6.171 22 H 0.030 0.970 23 H 0.038 0.962 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.267 0.733 28 H 0.404 0.596 29 H 0.154 0.846 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 6.645 -15.359 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.023 0.977 5 C -0.590 4.590 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.797 3.203 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.186 1.186 13 N -0.340 5.340 14 C 0.370 3.630 15 O -0.448 6.448 16 C -0.149 4.149 17 C -0.151 4.151 18 C -0.205 4.205 19 C -0.135 4.135 20 C -0.070 4.070 21 O -0.067 6.067 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.239 0.761 29 H 0.172 0.828 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.005 6.376 -14.509 16.948 hybrid contribution 0.916 -0.094 0.391 1.001 sum -5.089 6.283 -14.118 16.269 Atomic orbital electron populations 1.21698 0.96926 0.99461 1.00213 1.21799 0.93826 0.98820 1.01577 1.18530 0.94081 0.89416 0.80694 0.97713 1.21530 0.91135 1.39399 1.06944 0.91263 1.25756 1.03463 0.94144 0.94842 1.70035 1.37151 1.38071 1.09826 0.85342 0.78861 0.77546 0.78573 1.20348 1.20688 1.18613 1.46262 1.14753 1.54897 1.18093 1.16983 0.82602 0.78443 0.84969 1.90811 1.52757 1.61991 1.39278 1.21965 0.93787 1.10790 0.88350 1.22055 0.96811 0.98350 0.97878 1.20850 0.98822 1.06446 0.94382 1.20250 0.94768 0.99000 0.99472 1.25163 0.91503 0.95573 0.94777 1.84067 1.42115 1.60013 1.20494 0.95108 0.94274 0.93154 0.94058 0.90424 0.92420 0.76135 0.82805 0.90353 0.91369 0.89179 0.72916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.51 71.98 0.61 -5.20 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.58 2.24 44.25 0.10 14.68 16 4 H 0.00 0.31 7.58 -2.39 -0.02 0.29 16 5 C -0.55 -29.84 8.73 25.60 0.22 -29.62 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.02 1.00 5.29 84.66 0.45 1.44 16 8 N -0.91 -52.26 11.29 21.45 0.24 -52.02 16 9 Si 0.97 42.33 29.54 68.60 2.03 44.35 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 13 N -0.69 -31.09 5.02 -450.10 -2.26 -33.35 16 14 C 0.58 25.55 6.35 86.44 0.55 26.10 16 15 O -0.57 -28.32 14.00 -4.32 -0.06 -28.38 16 16 C -0.10 -3.42 7.13 24.07 0.17 -3.25 16 17 C -0.13 -3.92 10.57 22.39 0.24 -3.68 16 18 C -0.20 -4.44 6.14 -20.06 -0.12 -4.56 16 19 C -0.08 -1.06 10.39 71.24 0.74 -0.32 16 20 C 0.00 -0.02 12.00 67.10 0.81 0.78 16 21 O -0.17 -5.01 10.40 -5.00 -0.05 -5.06 16 22 H 0.03 1.51 7.84 -2.38 -0.02 1.49 16 23 H 0.04 1.77 5.64 -2.39 -0.01 1.76 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.08 4.31 5.95 -2.39 -0.01 4.30 16 27 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.40 16.16 8.29 -92.71 -0.77 15.39 16 29 H 0.15 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.26 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -67.24 282.55 4.18 -63.06 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.35 Total: 20.98 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 3.93 Total: -9.58 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.02 Total: -85.37 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.11 Total: -33.44 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -67.24 4.18 -63.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260186481.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.252 kcal (2) G-P(sol) polarization free energy of solvation -67.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds