Wall clock time and date at job start Sun Mar 29 2020 22:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35128 * 125.61722 * 2 1 4 4 C 1.40369 * 107.11343 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.64225 * 179.97438 * 4 3 2 6 6 C 1.36535 * 106.70852 * 0.02562 * 4 3 2 7 7 C 1.46664 * 125.98879 * 179.97438 * 6 4 3 8 8 O 1.21702 * 119.99522 * 352.80341 * 7 6 4 9 9 N 1.34770 * 120.00252 * 173.07258 * 7 6 4 10 10 C 1.46502 * 120.00188 * 3.27178 * 9 7 6 11 11 C 1.46498 * 119.99932 * 183.26595 * 9 7 6 12 12 C 1.50700 * 109.46853 * 90.00464 * 11 9 7 13 13 H 1.07998 * 120.00505 * 359.97438 * 12 11 9 14 14 C 1.37887 * 119.99941 * 180.02562 * 12 11 9 15 15 N 1.31512 * 119.99896 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99914 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47070 * 90.00012 * 16 14 12 18 18 H 1.48503 * 109.47051 * 210.00039 * 16 14 12 19 19 H 1.48501 * 109.47015 * 329.99719 * 16 14 12 20 20 O 1.33937 * 125.61245 * 180.30854 * 2 1 3 21 21 H 1.09004 * 109.47339 * 90.00405 * 1 2 3 22 22 H 1.09001 * 109.46998 * 210.00155 * 1 2 3 23 23 H 1.08997 * 109.47243 * 329.99844 * 1 2 3 24 24 H 1.08002 * 126.44039 * 0.05181 * 3 2 1 25 25 H 1.08996 * 109.47349 * 269.99990 * 5 4 3 26 26 H 1.09007 * 109.46945 * 30.00418 * 5 4 3 27 27 H 1.08997 * 109.46880 * 149.99821 * 5 4 3 28 28 H 1.08996 * 109.47441 * 83.97742 * 10 9 7 29 29 H 1.08999 * 109.47223 * 203.98282 * 10 9 7 30 30 H 1.09009 * 109.46923 * 323.97981 * 10 9 7 31 31 H 1.09003 * 109.46988 * 209.99836 * 11 9 7 32 32 H 1.08995 * 109.47497 * 330.00193 * 11 9 7 33 33 H 0.96998 * 119.99876 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 4.8618 1.5143 -0.0014 6 6 3.5823 -0.7117 -0.0015 7 6 4.7414 -1.6103 -0.0029 8 8 5.8629 -1.1565 -0.1354 9 7 4.5643 -2.9389 0.1370 10 6 3.2105 -3.4929 0.2186 11 6 5.7255 -3.8293 0.2075 12 6 6.1493 -3.9892 1.6448 13 1 5.6081 -3.4784 2.4275 14 6 7.2287 -4.7870 1.9606 15 7 7.8881 -5.4086 1.0075 16 14 7.7545 -4.9846 3.7421 17 1 7.0409 -6.1398 4.3435 18 1 9.2192 -5.2215 3.8026 19 1 7.4213 -3.7497 4.4965 20 8 2.2869 -1.0889 -0.0059 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5138 24 1 1.9612 2.1260 0.0008 25 1 5.1594 1.7217 -1.0292 26 1 4.6515 2.4523 0.5125 27 1 5.6687 0.9916 0.5122 28 1 2.8151 -3.6357 -0.7871 29 1 3.2407 -4.4514 0.7367 30 1 2.5683 -2.8036 0.7670 31 1 5.4618 -4.8036 -0.2041 32 1 6.5465 -3.4019 -0.3680 33 1 8.6476 -5.9695 1.2297 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267179494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:53 Heat of formation + Delta-G solvation = -46.208083 kcal Electronic energy + Delta-G solvation = -16858.614541 eV Core-core repulsion = 14078.293845 eV Total energy + Delta-G solvation = -2780.320696 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.72449 -40.40697 -36.91462 -35.08885 -34.68221 -33.27709 -30.21828 -28.92928 -28.20292 -27.16529 -24.92940 -22.37657 -21.81582 -20.29315 -18.75798 -18.34462 -17.58143 -17.25797 -16.47974 -16.14932 -15.78559 -14.88773 -14.50897 -14.38696 -14.17057 -14.00298 -13.77086 -13.76450 -13.62988 -13.41313 -13.21591 -13.07161 -12.75370 -12.53772 -12.46019 -12.23524 -11.76708 -10.99580 -10.67114 -10.60608 -9.68702 -9.28116 -8.25781 -6.41634 0.08817 1.35439 1.38501 1.39089 1.49447 1.68011 2.13934 2.33475 2.42448 3.03592 3.58712 3.82233 3.83816 4.31718 4.50135 4.52458 4.57042 4.61754 4.69151 4.75390 4.78171 4.85510 4.99382 5.00701 5.13958 5.19321 5.31657 5.46886 5.58111 5.74045 5.98381 6.00186 6.56342 6.65777 7.12807 7.31364 8.81598 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033420 B = 0.006404 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.623672 B = 4370.905496 C = 4641.316196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.016 3.984 3 C -0.227 4.227 4 C -0.097 4.097 5 C -0.090 4.090 6 C -0.111 4.111 7 C 0.579 3.421 8 O -0.568 6.568 9 N -0.601 5.601 10 C 0.083 3.917 11 C 0.259 3.741 12 C -0.549 4.549 13 H 0.051 0.949 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.971 3.029 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.274 1.274 20 O -0.163 6.163 21 H 0.103 0.897 22 H 0.086 0.914 23 H 0.116 0.884 24 H 0.187 0.813 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.030 0.970 32 H 0.006 0.994 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.243 11.126 -1.225 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.036 4.036 3 C -0.245 4.245 4 C -0.100 4.100 5 C -0.146 4.146 6 C -0.162 4.162 7 C 0.368 3.632 8 O -0.450 6.450 9 N -0.331 5.331 10 C -0.059 4.059 11 C 0.138 3.862 12 C -0.587 4.587 13 H 0.069 0.931 14 C -0.189 4.189 15 N -0.565 5.565 16 Si 0.795 3.205 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.199 1.199 20 O -0.060 6.060 21 H 0.121 0.879 22 H 0.105 0.895 23 H 0.134 0.866 24 H 0.204 0.796 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.024 0.976 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.611 10.859 -1.338 19.890 hybrid contribution 0.923 -0.372 0.623 1.174 sum -15.687 10.486 -0.715 18.883 Atomic orbital electron populations 1.20653 0.80967 1.05973 1.05376 1.23868 0.96230 0.83830 0.99681 1.21754 0.90043 1.01381 1.11350 1.20974 0.98131 0.91713 0.99219 1.20366 0.92885 0.98392 1.02957 1.21630 0.82020 0.94335 1.18260 1.17137 0.86504 0.81969 0.77595 1.90759 1.24636 1.76209 1.53440 1.48111 1.09517 1.06110 1.69321 1.21994 0.81261 1.00253 1.02413 1.18905 0.82957 0.87890 0.96427 1.21651 1.14922 1.29131 0.93039 0.93098 1.25865 0.95630 0.94764 1.02595 1.70045 1.20886 1.31159 1.34403 0.85368 0.77717 0.78714 0.78723 1.18634 1.20228 1.19928 1.84230 1.15279 1.35146 1.71347 0.87905 0.89470 0.86557 0.79578 0.90492 0.88597 0.92993 0.91424 0.90389 0.89748 0.95183 0.97599 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.41 71.24 0.74 -0.07 16 2 C 0.02 0.36 7.31 24.97 0.18 0.55 16 3 C -0.23 -5.34 10.73 22.07 0.24 -5.11 16 4 C -0.10 -3.18 6.20 -19.74 -0.12 -3.31 16 5 C -0.09 -2.75 9.75 71.24 0.69 -2.06 16 6 C -0.11 -4.29 6.76 24.07 0.16 -4.12 16 7 C 0.58 27.99 7.64 86.44 0.66 28.65 16 8 O -0.57 -31.51 14.40 -4.35 -0.06 -31.57 16 9 N -0.60 -28.82 2.86 -855.90 -2.44 -31.27 16 10 C 0.08 3.00 9.62 127.77 1.23 4.22 16 11 C 0.26 14.72 5.16 85.63 0.44 15.17 16 12 C -0.55 -32.85 9.39 25.60 0.24 -32.61 16 13 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 14 C 0.01 0.64 5.46 84.66 0.46 1.10 16 15 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 16 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 O -0.16 -5.07 7.30 -5.13 -0.04 -5.11 16 21 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 2.77 8.03 -2.39 -0.02 2.75 16 30 H 0.08 2.79 5.42 -2.38 -0.01 2.77 16 31 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 32 H 0.01 0.38 7.37 -2.39 -0.02 0.36 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -76.02 285.66 5.80 -70.22 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.10 Total: 4.05 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 4.93 Total: 2.41 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -2.16 Total: -87.66 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.10 Total: -36.67 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -76.02 5.80 -70.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267179494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.010 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds