Wall clock time and date at job start Sun Mar 29 2020 22:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47327 * 2 1 4 4 N 1.46501 * 109.47432 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99907 * 264.76883 * 4 3 2 6 6 H 1.07998 * 119.99957 * 138.85167 * 5 4 3 7 7 C 1.38954 * 119.99963 * 318.85370 * 5 4 3 8 8 N 1.31408 * 119.99846 * 341.83320 * 7 5 4 9 9 Si 1.86801 * 120.00038 * 161.82919 * 7 5 4 10 10 H 1.48500 * 109.47147 * 60.00032 * 9 7 5 11 11 H 1.48502 * 109.47034 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46980 * 300.00218 * 9 7 5 13 13 C 1.34779 * 120.00208 * 84.76469 * 4 3 2 14 14 O 1.21287 * 119.99632 * 180.02562 * 13 4 3 15 15 C 1.50698 * 119.99790 * 0.02562 * 13 4 3 16 16 C 1.50696 * 109.46879 * 179.97438 * 15 13 4 17 17 C 1.34508 * 125.79200 * 89.99846 * 16 15 13 18 18 C 1.41387 * 106.84328 * 179.97438 * 17 16 15 19 19 C 1.34512 * 106.83962 * 0.02562 * 18 17 16 20 20 O 1.34300 * 108.42128 * 359.73767 * 19 18 17 21 21 H 1.08995 * 109.47209 * 59.99464 * 1 2 3 22 22 H 1.08997 * 109.47344 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46761 * 300.00192 * 1 2 3 24 24 H 1.09002 * 109.47043 * 240.00193 * 2 1 3 25 25 H 1.08994 * 109.47430 * 120.00037 * 2 1 3 26 26 H 1.09007 * 109.47358 * 60.00173 * 3 2 1 27 27 H 1.09005 * 109.47343 * 300.00309 * 3 2 1 28 28 H 0.96999 * 120.00026 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47073 * 299.99337 * 15 13 4 30 30 H 1.09005 * 109.47321 * 59.99713 * 15 13 4 31 31 H 1.07997 * 126.58195 * 0.03789 * 17 16 15 32 32 H 1.07998 * 126.58139 * 179.97438 * 18 17 16 33 33 H 1.08000 * 125.79004 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5506 1.1815 6 1 5.0710 0.9482 1.3522 7 6 3.7540 2.4351 2.1600 8 7 2.9284 3.4077 1.8451 9 14 4.3400 2.2415 3.9231 10 1 5.8197 2.3586 3.9686 11 1 3.7337 3.3034 4.7657 12 1 3.9329 0.9088 4.4365 13 6 4.1785 1.3362 -1.1632 14 8 5.3914 1.3357 -1.1636 15 6 3.4245 1.2178 -2.4626 16 6 4.4033 1.1140 -3.6037 17 6 4.9143 -0.0267 -4.1004 18 6 5.7825 0.3383 -5.1550 19 6 5.7504 1.6804 -5.2392 20 8 4.9092 2.1446 -4.3008 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 2.6236 4.0254 2.5280 29 1 2.7976 0.3264 -2.4390 30 1 2.7980 2.0991 -2.6008 31 1 4.7016 -1.0293 -3.7599 32 1 6.3610 -0.3317 -5.7736 33 1 6.3033 2.2824 -5.9452 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268799076.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:20 Heat of formation + Delta-G solvation = -23.775868 kcal Electronic energy + Delta-G solvation = -16921.996524 eV Core-core repulsion = 14142.648562 eV Total energy + Delta-G solvation = -2779.347962 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.10844 -38.54541 -35.26926 -32.98269 -32.58191 -31.48564 -31.01217 -26.99902 -25.69033 -24.19660 -21.35092 -21.05841 -20.43237 -18.92792 -16.90207 -16.78515 -16.19697 -15.28749 -14.83322 -14.45877 -14.30854 -13.85482 -13.54873 -12.93337 -12.67089 -12.42101 -12.31697 -12.00144 -11.65373 -11.45655 -11.40632 -11.10488 -10.96040 -10.64889 -10.35955 -10.28181 -9.95811 -9.49821 -8.91008 -8.52657 -7.95564 -7.41803 -6.31467 -4.00240 2.17419 3.02906 3.20601 3.25913 3.29517 3.42243 3.90581 4.18085 4.85426 5.01121 5.12170 5.39475 5.41170 5.53256 5.62093 5.71340 5.81649 5.88718 6.04399 6.15373 6.21984 6.31053 6.35805 6.44380 6.52133 6.58303 6.88078 6.93252 7.22270 7.58082 7.59241 8.29689 8.51862 9.19688 9.38591 10.00867 10.73716 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026180 B = 0.007444 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.274774 B = 3760.388784 C = 4425.821505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.107 3.893 4 N -0.441 5.441 5 C -0.310 4.310 6 H 0.088 0.912 7 C 0.040 3.960 8 N -0.871 5.871 9 Si 0.918 3.082 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.464 3.536 14 O -0.569 6.569 15 C -0.064 4.064 16 C 0.035 3.965 17 C -0.215 4.215 18 C -0.212 4.212 19 C -0.054 4.054 20 O -0.173 6.173 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.048 0.952 28 H 0.268 0.732 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -4.732 -8.145 10.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.018 4.018 4 N -0.160 5.160 5 C -0.438 4.438 6 H 0.105 0.895 7 C -0.165 4.165 8 N -0.509 5.509 9 Si 0.745 3.255 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.251 3.749 14 O -0.452 6.452 15 C -0.105 4.105 16 C -0.015 4.015 17 C -0.234 4.234 18 C -0.232 4.232 19 C -0.122 4.122 20 O -0.068 6.068 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.579 -4.253 -7.965 9.713 hybrid contribution 0.283 -0.179 0.750 0.822 sum -3.296 -4.431 -7.215 9.086 Atomic orbital electron populations 1.21685 0.96269 1.00740 1.01635 1.22006 0.94960 0.99303 1.01781 1.21580 0.82224 0.94291 1.03669 1.43397 1.04405 1.63639 1.04567 1.19338 1.12101 1.21560 0.90763 0.89474 1.25422 0.97028 0.93485 1.00559 1.69915 1.33495 1.13390 1.34096 0.86133 0.79335 0.77925 0.82120 1.19740 1.20957 1.19839 1.20124 0.88108 0.82311 0.84324 1.90558 1.13950 1.54084 1.86574 1.20305 0.95561 1.04819 0.89767 1.21863 0.99424 0.85021 0.95242 1.21412 1.02738 0.98898 1.00367 1.21700 1.04118 0.95335 1.02000 1.23844 0.97983 0.94836 0.95535 1.84001 1.47996 1.36284 1.38566 0.93096 0.93407 0.92705 0.93167 0.91571 0.87658 0.93319 0.92197 0.87416 0.88361 0.83994 0.83983 0.78651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.14 -2.45 6.17 -26.73 -0.16 -2.61 16 3 C 0.11 2.24 4.69 -4.04 -0.02 2.22 16 4 N -0.44 -11.12 2.50 -114.81 -0.29 -11.41 16 5 C -0.31 -8.62 8.84 -14.93 -0.13 -8.75 16 6 H 0.09 2.54 7.82 -52.49 -0.41 2.13 16 7 C 0.04 1.05 4.95 -17.47 -0.09 0.96 16 8 N -0.87 -23.55 11.61 55.50 0.64 -22.91 16 9 Si 0.92 20.70 29.59 -169.99 -5.03 15.67 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.46 11.57 7.59 -10.99 -0.08 11.49 16 14 O -0.57 -16.58 15.95 5.55 0.09 -16.49 16 15 C -0.06 -1.24 4.84 -29.04 -0.14 -1.38 16 16 C 0.04 0.69 5.81 -35.63 -0.21 0.48 16 17 C -0.21 -3.79 10.81 -39.70 -0.43 -4.22 16 18 C -0.21 -3.28 10.91 -39.70 -0.43 -3.72 16 19 C -0.05 -0.84 12.09 29.41 0.36 -0.48 16 20 O -0.17 -3.33 10.65 5.69 0.06 -3.27 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.81 6.60 -51.93 -0.34 0.46 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.11 2.46 5.76 -51.93 -0.30 2.16 16 27 H 0.05 0.93 6.66 -51.93 -0.35 0.59 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.11 1.73 6.54 -51.93 -0.34 1.39 16 30 H 0.10 1.75 7.41 -51.93 -0.38 1.36 16 31 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 32 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.20 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 284.06 15.07 4.28 4.28 Total: -1.00 -32.67 284.06 -5.43 -38.10 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.22 Total: 3.68 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.97 Total: -7.65 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.36 Total: -34.32 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.15 Total: -19.76 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.67 -5.43 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268799076.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.321 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds