Wall clock time and date at job start Sun Mar 29 2020 22:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47327 * 2 1 4 4 N 1.46501 * 109.47432 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99907 * 264.76883 * 4 3 2 6 6 H 1.07998 * 119.99957 * 138.85167 * 5 4 3 7 7 C 1.38954 * 119.99963 * 318.85370 * 5 4 3 8 8 N 1.31408 * 119.99846 * 341.83320 * 7 5 4 9 9 Si 1.86801 * 120.00038 * 161.82919 * 7 5 4 10 10 H 1.48500 * 109.47147 * 60.00032 * 9 7 5 11 11 H 1.48502 * 109.47034 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46980 * 300.00218 * 9 7 5 13 13 C 1.34779 * 120.00208 * 84.76469 * 4 3 2 14 14 O 1.21287 * 119.99632 * 180.02562 * 13 4 3 15 15 C 1.50698 * 119.99790 * 0.02562 * 13 4 3 16 16 C 1.50696 * 109.46879 * 179.97438 * 15 13 4 17 17 C 1.34508 * 125.79200 * 89.99846 * 16 15 13 18 18 C 1.41387 * 106.84328 * 179.97438 * 17 16 15 19 19 C 1.34512 * 106.83962 * 0.02562 * 18 17 16 20 20 O 1.34300 * 108.42128 * 359.73767 * 19 18 17 21 21 H 1.08995 * 109.47209 * 59.99464 * 1 2 3 22 22 H 1.08997 * 109.47344 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46761 * 300.00192 * 1 2 3 24 24 H 1.09002 * 109.47043 * 240.00193 * 2 1 3 25 25 H 1.08994 * 109.47430 * 120.00037 * 2 1 3 26 26 H 1.09007 * 109.47358 * 60.00173 * 3 2 1 27 27 H 1.09005 * 109.47343 * 300.00309 * 3 2 1 28 28 H 0.96999 * 120.00026 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47073 * 299.99337 * 15 13 4 30 30 H 1.09005 * 109.47321 * 59.99713 * 15 13 4 31 31 H 1.07997 * 126.58195 * 0.03789 * 17 16 15 32 32 H 1.07998 * 126.58139 * 179.97438 * 18 17 16 33 33 H 1.08000 * 125.79004 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5506 1.1815 6 1 5.0710 0.9482 1.3522 7 6 3.7540 2.4351 2.1600 8 7 2.9284 3.4077 1.8451 9 14 4.3400 2.2415 3.9231 10 1 5.8197 2.3586 3.9686 11 1 3.7337 3.3034 4.7657 12 1 3.9329 0.9088 4.4365 13 6 4.1785 1.3362 -1.1632 14 8 5.3914 1.3357 -1.1636 15 6 3.4245 1.2178 -2.4626 16 6 4.4033 1.1140 -3.6037 17 6 4.9143 -0.0267 -4.1004 18 6 5.7825 0.3383 -5.1550 19 6 5.7504 1.6804 -5.2392 20 8 4.9092 2.1446 -4.3008 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 2.6236 4.0254 2.5280 29 1 2.7976 0.3264 -2.4390 30 1 2.7980 2.0991 -2.6008 31 1 4.7016 -1.0293 -3.7599 32 1 6.3610 -0.3317 -5.7736 33 1 6.3033 2.2824 -5.9452 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268799076.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:20 Heat of formation + Delta-G solvation = -44.268188 kcal Electronic energy + Delta-G solvation = -16922.885137 eV Core-core repulsion = 14142.648562 eV Total energy + Delta-G solvation = -2780.236576 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.42273 -40.42759 -37.12902 -34.69388 -33.96934 -33.06959 -32.68582 -28.56169 -27.26749 -25.99862 -22.67380 -22.47973 -21.91291 -20.61278 -18.82578 -18.15919 -17.91119 -17.01544 -16.52075 -16.07651 -15.97039 -15.37529 -15.11979 -14.43971 -14.31609 -13.68513 -13.59843 -13.48565 -13.40150 -13.16079 -12.98083 -12.69852 -12.54527 -12.25120 -12.10595 -11.96214 -11.48208 -10.87936 -10.78591 -10.47417 -9.40421 -9.31198 -8.34717 -6.11976 0.84681 1.38842 1.40130 1.50444 1.76185 2.00882 2.16886 2.31902 2.99583 3.12428 3.76247 4.06195 4.16771 4.18276 4.22375 4.34226 4.43037 4.49627 4.65578 4.78724 4.96255 5.00669 5.05962 5.18073 5.25024 5.32885 5.42562 5.46844 5.61231 5.69540 6.22691 6.27994 6.54150 7.17069 7.43337 8.04600 8.68646 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026180 B = 0.007444 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.274774 B = 3760.388784 C = 4425.821505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.106 3.894 4 N -0.451 5.451 5 C -0.345 4.345 6 H 0.060 0.940 7 C 0.006 3.994 8 N -0.890 5.890 9 Si 0.981 3.019 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.261 1.261 13 C 0.449 3.551 14 O -0.625 6.625 15 C -0.049 4.049 16 C -0.007 4.007 17 C -0.217 4.217 18 C -0.221 4.221 19 C -0.052 4.052 20 O -0.199 6.199 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.274 0.726 29 H 0.139 0.861 30 H 0.110 0.890 31 H 0.155 0.845 32 H 0.176 0.824 33 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 -5.376 -9.015 11.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C -0.017 4.017 4 N -0.170 5.170 5 C -0.473 4.473 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.527 5.527 9 Si 0.804 3.196 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.186 1.186 13 C 0.239 3.761 14 O -0.511 6.511 15 C -0.088 4.088 16 C -0.057 4.057 17 C -0.236 4.236 18 C -0.240 4.240 19 C -0.118 4.118 20 O -0.096 6.096 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.157 0.843 30 H 0.128 0.872 31 H 0.172 0.828 32 H 0.193 0.807 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -4.554 -4.904 -8.837 11.085 hybrid contribution 0.627 0.044 0.954 1.142 sum -3.928 -4.860 -7.884 10.060 Atomic orbital electron populations 1.21641 0.93225 1.02476 1.02256 1.21903 0.97456 0.96326 1.01501 1.21708 0.79813 0.96873 1.03265 1.43697 1.06052 1.63041 1.04173 1.19315 1.12540 1.22580 0.92866 0.92214 1.26151 0.96892 0.92705 1.03935 1.69981 1.33801 1.13546 1.35388 0.85207 0.78262 0.78722 0.77429 1.20538 1.19486 1.18569 1.21064 0.87919 0.81077 0.86067 1.90501 1.16460 1.56477 1.87665 1.20162 0.95281 1.06785 0.86566 1.21975 1.01392 0.85829 0.96507 1.21806 1.02252 0.99062 1.00494 1.22133 1.04014 0.95995 1.01816 1.24819 0.96531 0.95770 0.94693 1.83975 1.49040 1.37009 1.39615 0.91353 0.91108 0.93258 0.91760 0.93579 0.90137 0.91473 0.91663 0.84294 0.87176 0.82760 0.80705 0.74449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.76 16 2 C -0.13 -4.44 6.17 30.59 0.19 -4.26 16 3 C 0.11 4.47 4.69 86.38 0.41 4.87 16 4 N -0.45 -23.31 2.50 -635.53 -1.59 -24.90 16 5 C -0.34 -19.89 8.84 84.04 0.74 -19.15 16 6 H 0.06 3.68 7.82 -2.91 -0.02 3.66 16 7 C 0.01 0.33 4.95 84.93 0.42 0.75 16 8 N -0.89 -48.54 11.61 21.66 0.25 -48.29 16 9 Si 0.98 42.85 29.59 68.60 2.03 44.88 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 C 0.45 22.94 7.59 87.66 0.66 23.61 16 14 O -0.62 -37.84 15.95 -3.05 -0.05 -37.89 16 15 C -0.05 -1.84 4.84 29.10 0.14 -1.70 16 16 C -0.01 -0.26 5.81 24.83 0.14 -0.12 16 17 C -0.22 -7.37 10.81 22.19 0.24 -7.13 16 18 C -0.22 -6.32 10.91 22.19 0.24 -6.08 16 19 C -0.05 -1.49 12.09 66.97 0.81 -0.68 16 20 O -0.20 -7.57 10.65 -2.55 -0.03 -7.59 16 21 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.06 1.95 6.60 -2.39 -0.02 1.93 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 3.80 5.76 -2.38 -0.01 3.79 16 27 H 0.07 2.51 6.66 -2.38 -0.02 2.50 16 28 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.14 4.23 6.54 -2.39 -0.02 4.21 16 30 H 0.11 3.83 7.41 -2.38 -0.02 3.81 16 31 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.18 3.69 8.06 -2.91 -0.02 3.66 16 33 H 0.24 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -73.67 284.06 6.43 -67.24 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.10 Total: 19.20 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 4.71 Total: -12.64 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -1.34 Total: -73.20 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.08 Total: -45.49 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -73.67 6.43 -67.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268799076.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.972 kcal (2) G-P(sol) polarization free energy of solvation -73.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds