Wall clock time and date at job start Sun Mar 29 2020 21:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99699 * 2 1 4 4 H 1.48507 * 109.47021 * 239.99507 * 3 2 1 5 5 H 1.48496 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46959 * 120.00403 * 3 2 1 7 7 C 1.37876 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99380 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00453 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47381 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47571 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47059 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99544 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00472 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00020 * 180.02562 * 13 12 11 16 16 C 1.50698 * 109.47294 * 180.02562 * 15 13 12 17 17 C 1.34512 * 125.79319 * 89.99543 * 16 15 13 18 18 C 1.41380 * 106.84217 * 179.97438 * 17 16 15 19 19 C 1.34522 * 106.83858 * 0.02562 * 18 17 16 20 20 O 1.34296 * 108.41991 * 359.72958 * 19 18 17 21 21 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46897 * 60.00096 * 9 7 2 23 23 H 1.09001 * 109.47545 * 300.00418 * 9 7 2 24 24 H 1.09004 * 109.46785 * 60.00324 * 10 9 7 25 25 H 1.09001 * 109.47364 * 300.00825 * 10 9 7 26 26 H 1.08996 * 109.46524 * 60.00315 * 11 10 9 27 27 H 1.08992 * 109.46876 * 300.00648 * 11 10 9 28 28 H 0.96994 * 120.00700 * 0.02562 * 12 11 10 29 29 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 30 30 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 31 31 H 1.07995 * 126.58079 * 0.03730 * 17 16 15 32 32 H 1.07994 * 126.58088 * 179.97438 * 18 17 16 33 33 H 1.07998 * 125.78711 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9872 0.0020 12 7 2.4322 -6.1006 0.0024 13 6 1.9830 -7.3713 0.0024 14 8 0.7906 -7.5929 0.0016 15 6 2.9623 -8.5168 0.0033 16 6 2.2088 -9.8219 0.0025 17 6 1.8165 -10.5031 -1.0891 18 6 1.1480 -11.6615 -0.6307 19 6 1.1712 -11.6185 0.7137 20 8 1.8199 -10.5050 1.0915 21 1 -0.4849 0.8400 -0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6246 -2.5563 0.8919 24 1 2.8725 -3.6039 0.8910 25 1 2.8713 -3.6047 -0.8890 26 1 0.8533 -5.0450 -0.8877 27 1 0.8539 -5.0447 0.8921 28 1 3.3859 -5.9234 0.0026 29 1 3.5895 -8.4593 -0.8863 30 1 3.5884 -8.4588 0.8937 31 1 1.9815 -10.2201 -2.1181 32 1 0.7032 -12.4323 -1.2424 33 1 0.7451 -12.3570 1.3766 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268856373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:26 Heat of formation + Delta-G solvation = -41.415250 kcal Electronic energy + Delta-G solvation = -15644.486575 eV Core-core repulsion = 12864.373712 eV Total energy + Delta-G solvation = -2780.112863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.63422 -39.44163 -35.46221 -33.37977 -33.21895 -32.28269 -31.06489 -27.72590 -26.19472 -23.13133 -21.84182 -21.03428 -20.67381 -19.85186 -17.54104 -17.10285 -16.42965 -15.74239 -15.60882 -15.42500 -14.56336 -14.42810 -14.08513 -13.43047 -12.91448 -12.90937 -12.78968 -12.29035 -12.01955 -11.83719 -11.61793 -10.89372 -10.75022 -10.63807 -10.00503 -9.94827 -9.88200 -9.42192 -9.15037 -8.82116 -8.53793 -8.38075 -6.02748 -4.06169 1.61976 2.52251 2.69758 2.86320 3.31257 3.36131 3.37640 3.48287 4.43195 4.43380 4.85473 4.88715 4.93797 5.10135 5.17043 5.32888 5.67752 5.72491 5.75680 5.82223 5.99670 6.14167 6.40764 6.44772 6.57736 6.80363 6.98242 7.04407 7.61926 7.64785 7.74571 7.95760 8.32670 8.37511 9.00378 9.58064 11.08542 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.084121 B = 0.003316 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.773165 B = 8441.604664 C = 8570.529081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.725 5.725 13 C 0.507 3.493 14 O -0.533 6.533 15 C -0.063 4.063 16 C 0.009 3.991 17 C -0.199 4.199 18 C -0.214 4.214 19 C -0.041 4.041 20 O -0.173 6.173 21 H 0.262 0.738 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.399 0.601 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 -20.545 -0.367 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.376 5.376 13 C 0.292 3.708 14 O -0.410 6.410 15 C -0.103 4.103 16 C -0.041 4.041 17 C -0.218 4.218 18 C -0.233 4.233 19 C -0.109 4.109 20 O -0.069 6.069 21 H 0.072 0.928 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.233 0.767 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.234 -20.468 -0.072 21.397 hybrid contribution 0.739 0.917 -0.211 1.196 sum 6.973 -19.551 -0.283 20.760 Atomic orbital electron populations 1.69957 1.06076 1.26836 1.50413 1.25034 0.94863 0.99319 0.95246 0.86633 0.79553 0.83063 0.78588 1.20232 1.21260 1.20238 1.21166 0.92959 0.90956 1.51139 0.92678 1.19026 0.93856 0.90842 0.97671 1.21892 0.99773 0.93291 1.00904 1.21664 0.91875 0.85027 1.02068 1.46165 1.10906 1.05698 1.74860 1.20345 0.89556 0.83910 0.77030 1.90746 1.16738 1.84632 1.48851 1.20130 0.96891 0.86867 1.06401 1.21519 1.02997 0.95157 0.84471 1.21523 1.04295 0.96665 0.99321 1.21794 1.05887 1.00777 0.94839 1.23977 1.00871 0.89875 0.96135 1.83984 1.57467 1.30470 1.34938 0.92842 0.96277 0.96273 0.92678 0.92676 0.91710 0.91747 0.76679 0.85936 0.87088 0.83591 0.83531 0.78189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 2.03 5.67 -4.04 -0.02 2.00 16 12 N -0.72 -9.88 5.56 -60.30 -0.33 -10.22 16 13 C 0.51 7.32 7.82 -10.98 -0.09 7.23 16 14 O -0.53 -10.32 16.03 5.56 0.09 -10.23 16 15 C -0.06 -0.63 6.23 -29.03 -0.18 -0.81 16 16 C 0.01 0.11 5.81 -35.63 -0.21 -0.09 16 17 C -0.20 -2.36 10.81 -39.70 -0.43 -2.79 16 18 C -0.21 -2.29 10.91 -39.70 -0.43 -2.72 16 19 C -0.04 -0.43 12.09 29.42 0.36 -0.07 16 20 O -0.17 -2.25 10.65 5.72 0.06 -2.19 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.40 4.08 8.47 -40.82 -0.35 3.74 16 29 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 294.38 15.07 4.44 4.44 Total: -1.00 -34.56 294.38 -6.27 -40.83 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.54 Total: -0.30 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.69 Total: -12.61 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.40 Total: -36.32 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.15 Total: -12.42 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.56 -6.27 -40.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268856373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.586 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds