Wall clock time and date at job start Sun Mar 29 2020 21:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99699 * 2 1 4 4 H 1.48507 * 109.47021 * 239.99507 * 3 2 1 5 5 H 1.48496 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46959 * 120.00403 * 3 2 1 7 7 C 1.37876 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99380 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00453 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47381 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47571 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47059 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99544 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00472 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00020 * 180.02562 * 13 12 11 16 16 C 1.50698 * 109.47294 * 180.02562 * 15 13 12 17 17 C 1.34512 * 125.79319 * 89.99543 * 16 15 13 18 18 C 1.41380 * 106.84217 * 179.97438 * 17 16 15 19 19 C 1.34522 * 106.83858 * 0.02562 * 18 17 16 20 20 O 1.34296 * 108.41991 * 359.72958 * 19 18 17 21 21 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46897 * 60.00096 * 9 7 2 23 23 H 1.09001 * 109.47545 * 300.00418 * 9 7 2 24 24 H 1.09004 * 109.46785 * 60.00324 * 10 9 7 25 25 H 1.09001 * 109.47364 * 300.00825 * 10 9 7 26 26 H 1.08996 * 109.46524 * 60.00315 * 11 10 9 27 27 H 1.08992 * 109.46876 * 300.00648 * 11 10 9 28 28 H 0.96994 * 120.00700 * 0.02562 * 12 11 10 29 29 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 30 30 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 31 31 H 1.07995 * 126.58079 * 0.03730 * 17 16 15 32 32 H 1.07994 * 126.58088 * 179.97438 * 18 17 16 33 33 H 1.07998 * 125.78711 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9872 0.0020 12 7 2.4322 -6.1006 0.0024 13 6 1.9830 -7.3713 0.0024 14 8 0.7906 -7.5929 0.0016 15 6 2.9623 -8.5168 0.0033 16 6 2.2088 -9.8219 0.0025 17 6 1.8165 -10.5031 -1.0891 18 6 1.1480 -11.6615 -0.6307 19 6 1.1712 -11.6185 0.7137 20 8 1.8199 -10.5050 1.0915 21 1 -0.4849 0.8400 -0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6246 -2.5563 0.8919 24 1 2.8725 -3.6039 0.8910 25 1 2.8713 -3.6047 -0.8890 26 1 0.8533 -5.0450 -0.8877 27 1 0.8539 -5.0447 0.8921 28 1 3.3859 -5.9234 0.0026 29 1 3.5895 -8.4593 -0.8863 30 1 3.5884 -8.4588 0.8937 31 1 1.9815 -10.2201 -2.1181 32 1 0.7032 -12.4323 -1.2424 33 1 0.7451 -12.3570 1.3766 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268856373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:26 Heat of formation + Delta-G solvation = -65.402395 kcal Electronic energy + Delta-G solvation = -15645.526736 eV Core-core repulsion = 12864.373712 eV Total energy + Delta-G solvation = -2781.153024 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.46716 -40.65188 -36.99193 -35.19666 -34.13561 -33.39743 -32.59661 -29.07181 -27.60100 -24.90472 -22.67447 -22.31828 -22.04178 -20.98354 -18.65161 -18.29382 -18.11965 -16.85509 -16.83599 -16.58790 -16.41710 -15.71951 -15.19478 -14.69010 -14.21279 -13.96603 -13.76203 -13.72417 -13.52719 -13.42235 -12.74112 -12.63289 -12.55003 -12.40594 -11.66425 -11.60278 -11.26542 -10.97874 -10.80468 -10.54797 -10.11595 -9.37681 -8.19381 -6.31251 0.76745 1.42113 1.45237 1.53110 1.59618 1.68821 2.05952 2.37815 2.45695 3.14360 3.62419 3.95021 4.15507 4.16812 4.20477 4.22571 4.40038 4.49646 4.55368 4.92957 4.94409 5.00047 5.02698 5.17558 5.23490 5.42814 5.52839 5.63243 5.70699 5.84276 6.21577 6.21964 6.57069 6.86623 7.25246 7.38615 8.92660 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.084121 B = 0.003316 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.773165 B = 8441.604664 C = 8570.529081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.711 5.711 13 C 0.505 3.495 14 O -0.589 6.589 15 C -0.051 4.051 16 C -0.018 4.018 17 C -0.214 4.214 18 C -0.230 4.230 19 C -0.045 4.045 20 O -0.194 6.194 21 H 0.263 0.737 22 H -0.009 1.009 23 H -0.010 1.010 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.420 0.580 29 H 0.161 0.839 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.621 -21.063 -0.446 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.087 0.913 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.363 5.363 13 C 0.293 3.707 14 O -0.469 6.469 15 C -0.090 4.090 16 C -0.068 4.068 17 C -0.233 4.233 18 C -0.249 4.249 19 C -0.112 4.112 20 O -0.091 6.091 21 H 0.072 0.928 22 H 0.009 0.991 23 H 0.008 0.992 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.258 0.742 29 H 0.179 0.821 30 H 0.158 0.842 31 H 0.175 0.825 32 H 0.185 0.815 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.699 -20.999 -0.154 22.730 hybrid contribution -0.066 1.006 -0.194 1.026 sum 8.633 -19.993 -0.348 21.780 Atomic orbital electron populations 1.70113 1.08021 1.27876 1.51678 1.26048 0.95741 1.03649 0.94763 0.85455 0.78169 0.77822 0.79330 1.18907 1.21270 1.18967 1.21672 0.93828 0.91979 1.50515 0.91342 1.18951 0.94510 0.93135 0.94947 1.21596 0.98378 0.91556 1.02352 1.21217 0.92085 0.85761 1.00458 1.45901 1.11374 1.04681 1.74362 1.21167 0.89596 0.84712 0.75259 1.90726 1.19476 1.85408 1.51327 1.20227 0.95672 0.83510 1.09601 1.21998 1.04036 0.96214 0.84558 1.21899 1.04205 0.97192 0.99971 1.22181 1.06091 1.01175 0.95428 1.24760 0.99878 0.89619 0.96962 1.83972 1.58060 1.31391 1.35681 0.92821 0.99082 0.99160 0.91165 0.91032 0.93394 0.93638 0.74217 0.82137 0.84220 0.82474 0.81458 0.74840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.59 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.16 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 11 C 0.13 4.50 5.67 86.38 0.49 4.99 16 12 N -0.71 -18.16 5.56 -463.07 -2.57 -20.74 16 13 C 0.51 13.97 7.82 87.66 0.69 14.65 16 14 O -0.59 -23.05 16.03 -3.02 -0.05 -23.10 16 15 C -0.05 -0.89 6.23 29.10 0.18 -0.70 16 16 C -0.02 -0.42 5.81 24.83 0.14 -0.28 16 17 C -0.21 -4.82 10.81 22.19 0.24 -4.58 16 18 C -0.23 -4.63 10.91 22.19 0.24 -4.39 16 19 C -0.05 -0.89 12.09 66.97 0.81 -0.08 16 20 O -0.19 -4.88 10.65 -2.45 -0.03 -4.91 16 21 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 22 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 23 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 24 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.42 7.25 8.47 -92.71 -0.79 6.47 16 29 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.24 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -77.10 294.38 3.78 -73.33 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.32 Total: 9.35 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 3.80 Total: -22.36 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.29 Total: -77.89 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.07 Total: -28.01 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -77.10 3.78 -73.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268856373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.923 kcal (2) G-P(sol) polarization free energy of solvation -77.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds