Wall clock time and date at job start Sun Mar 29 2020 22:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47030 * 179.97438 * 16 14 13 18 18 C 1.34516 * 125.78596 * 90.00357 * 17 16 14 19 19 C 1.41382 * 106.83915 * 180.02562 * 18 17 16 20 20 C 1.34510 * 106.84386 * 359.97438 * 19 18 17 21 21 O 1.34302 * 125.79353 * 269.69112 * 17 16 14 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 28 28 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 29 29 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 30 30 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 31 31 H 1.08001 * 126.58077 * 359.96121 * 18 17 16 32 32 H 1.08000 * 126.57717 * 179.97438 * 19 18 17 33 33 H 1.08000 * 125.79312 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3610 3.8862 2.5231 18 6 -2.4957 3.2286 2.8223 19 6 -3.5652 4.1123 2.5500 20 6 -3.0202 5.2572 2.1012 21 8 -1.6845 5.1165 2.0926 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8292 -0.0604 -2.9503 28 1 2.2720 2.1231 1.9978 29 1 0.0673 2.6129 3.4685 30 1 0.7277 4.1529 2.8680 31 1 -2.5747 2.2189 3.1975 32 1 -4.6179 3.9074 2.6778 33 1 -3.5640 6.1414 1.8030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273871965.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:32 Heat of formation + Delta-G solvation = -31.475346 kcal Electronic energy + Delta-G solvation = -16744.770293 eV Core-core repulsion = 13965.088457 eV Total energy + Delta-G solvation = -2779.681837 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.35573 -38.94682 -35.10185 -32.94870 -32.44732 -31.85812 -30.67220 -27.47912 -26.26910 -23.03588 -21.57106 -21.01345 -19.93284 -19.31663 -17.43525 -16.96939 -16.00313 -15.43134 -15.10605 -14.90140 -14.44671 -14.00183 -13.01491 -12.85070 -12.67662 -12.62375 -12.50255 -12.10243 -11.58900 -11.25582 -11.24271 -10.98966 -10.81235 -10.32787 -10.17324 -9.72073 -9.62408 -9.11370 -9.02624 -8.49737 -8.23423 -7.82389 -6.11954 -4.21696 1.91476 2.79854 3.14261 3.25596 3.31121 3.31926 3.40048 4.17117 4.41023 4.77954 5.15928 5.19173 5.19556 5.44060 5.50135 5.58588 5.96522 6.08690 6.27393 6.39957 6.46670 6.66575 6.68405 7.04370 7.20747 7.32439 7.37498 7.45506 7.62061 7.73507 7.90588 8.18509 8.65816 8.77711 9.13298 9.45702 10.93340 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.046412 B = 0.005542 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.152751 B = 5051.046802 C = 5322.916878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.501 3.499 15 O -0.538 6.538 16 C -0.068 4.068 17 C 0.022 3.978 18 C -0.205 4.205 19 C -0.213 4.213 20 C -0.047 4.047 21 O -0.173 6.173 22 H 0.049 0.951 23 H 0.038 0.962 24 H 0.022 0.978 25 H 0.031 0.969 26 H 0.099 0.901 27 H 0.265 0.735 28 H 0.389 0.611 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 5.254 10.486 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.416 6.416 16 C -0.108 4.108 17 C -0.029 4.029 18 C -0.224 4.224 19 C -0.232 4.232 20 C -0.115 4.115 21 O -0.069 6.069 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.221 0.779 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.946 5.329 9.503 13.485 hybrid contribution 1.019 -0.174 0.255 1.065 sum -6.927 5.155 9.757 13.029 Atomic orbital electron populations 1.21838 0.98339 0.97997 1.01262 1.21932 0.92593 0.99812 1.02274 1.18787 0.94173 0.89169 0.80981 0.93341 1.21196 0.90694 1.39123 1.06325 0.92112 1.24890 0.98600 0.94798 0.95375 1.69890 1.35230 1.37541 1.09316 0.86512 0.84852 0.78303 0.77446 1.20159 1.21142 1.20200 1.46462 1.14396 1.56107 1.18664 1.20092 0.83061 0.79723 0.88671 1.90709 1.51281 1.59300 1.40274 1.20236 0.90481 1.01085 0.99048 1.21632 0.96134 0.83665 1.01483 1.21469 0.91437 1.01105 1.08393 1.21746 1.00173 0.94449 1.06846 1.23903 0.80374 1.01182 1.06008 1.83989 1.24515 1.32129 1.66239 0.93207 0.94273 0.95882 0.95018 0.88315 0.92501 0.77898 0.86558 0.87675 0.83791 0.83778 0.78440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.08 5.45 -26.74 -0.15 -3.23 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.71 11.30 55.43 0.63 -24.09 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.71 -14.25 5.02 -54.94 -0.28 -14.52 16 14 C 0.50 9.75 6.39 -10.99 -0.07 9.68 16 15 O -0.54 -12.76 13.17 5.56 0.07 -12.68 16 16 C -0.07 -0.97 6.23 -29.04 -0.18 -1.15 16 17 C 0.02 0.34 5.81 -35.62 -0.21 0.13 16 18 C -0.20 -3.02 10.81 -39.70 -0.43 -3.45 16 19 C -0.21 -2.81 10.91 -39.70 -0.43 -3.24 16 20 C -0.05 -0.61 12.09 29.41 0.36 -0.26 16 21 O -0.17 -2.77 10.65 5.70 0.06 -2.71 16 22 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 23 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.10 2.65 5.95 -51.93 -0.31 2.35 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.39 6.60 8.54 -40.82 -0.35 6.25 16 29 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.20 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 281.81 15.07 4.25 4.25 Total: -1.00 -31.70 281.81 -5.89 -37.59 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.25 Total: 7.00 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.34 Total: -10.28 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.35 Total: -38.61 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.13 Total: -15.40 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.70 -5.89 -37.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273871965.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.113 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds