Wall clock time and date at job start Sun Mar 29 2020 22:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.34515 * 125.78698 * 90.00172 * 17 16 14 19 19 C 1.41386 * 106.84011 * 180.02562 * 18 17 16 20 20 C 1.34515 * 106.83775 * 359.97438 * 19 18 17 21 21 O 1.34303 * 125.78985 * 269.70027 * 17 16 14 22 22 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 24 24 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 25 25 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 26 26 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 27 27 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 28 28 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 29 29 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 30 30 H 1.09006 * 109.46710 * 60.00529 * 16 14 13 31 31 H 1.07996 * 126.58362 * 359.96051 * 18 17 16 32 32 H 1.07998 * 126.57822 * 179.97438 * 19 18 17 33 33 H 1.08001 * 125.78416 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3313 3.8751 -2.5735 18 6 -1.6621 5.1065 -2.1448 19 6 -3.0721 5.1945 -2.2002 20 6 -3.5186 4.0118 -2.6599 21 8 -2.4595 3.2186 -2.8897 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8117 0.4042 0.4384 28 1 2.2954 2.1150 -1.9977 29 1 0.7620 4.1421 -2.8933 30 1 0.1091 2.5999 -3.4966 31 1 -0.9813 5.8793 -1.8196 32 1 -3.6750 6.0476 -1.9259 33 1 -4.5530 3.7468 -2.8214 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273871967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:35 Heat of formation + Delta-G solvation = -32.120226 kcal Electronic energy + Delta-G solvation = -16817.173802 eV Core-core repulsion = 14037.464001 eV Total energy + Delta-G solvation = -2779.709801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.43225 -39.13903 -35.29787 -33.03678 -32.53471 -32.07773 -31.04204 -27.66313 -26.39977 -22.42300 -21.64787 -21.24441 -20.05319 -19.51705 -17.90793 -17.19501 -16.53351 -15.54276 -15.32551 -15.12558 -14.16813 -13.76073 -13.31685 -12.96623 -12.72570 -12.64428 -12.52512 -12.44908 -12.08042 -11.83010 -11.40755 -10.80561 -10.69945 -10.42922 -9.86419 -9.79272 -9.78604 -9.29074 -9.16933 -8.32534 -8.25982 -8.09472 -6.62154 -4.21223 1.83539 2.72724 3.05390 3.23309 3.41113 3.46058 3.61650 4.07473 4.43752 4.69377 5.06724 5.08974 5.12466 5.33703 5.39611 5.46920 5.89514 6.02227 6.08900 6.11060 6.19231 6.29990 6.60570 6.70862 6.80937 6.97147 7.06422 7.24689 7.37033 7.41534 7.67262 8.23576 8.46287 8.69749 8.97041 9.43385 10.75697 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.041569 B = 0.006020 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.412027 B = 4650.298437 C = 4706.298472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.251 3.749 4 H 0.040 0.960 5 C -0.629 4.629 6 H 0.063 0.937 7 C 0.049 3.951 8 N -0.886 5.886 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.701 5.701 14 C 0.501 3.499 15 O -0.540 6.540 16 C -0.067 4.067 17 C 0.019 3.981 18 C -0.203 4.203 19 C -0.212 4.212 20 C -0.046 4.046 21 O -0.173 6.173 22 H 0.030 0.970 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.271 0.729 28 H 0.393 0.607 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.399 5.809 -8.960 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.147 3.853 4 H 0.058 0.942 5 C -0.666 4.666 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.518 5.518 9 Si 0.856 3.144 10 H -0.208 1.208 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.285 3.715 15 O -0.418 6.418 16 C -0.107 4.107 17 C -0.032 4.032 18 C -0.222 4.222 19 C -0.232 4.232 20 C -0.114 4.114 21 O -0.069 6.069 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.226 0.774 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.787 5.180 -6.756 15.362 hybrid contribution 0.122 0.551 -1.942 2.022 sum -12.666 5.731 -8.698 16.399 Atomic orbital electron populations 1.21891 0.97407 0.98838 1.01975 1.22230 0.93653 0.99747 1.01371 1.19015 0.95748 0.88467 0.82028 0.94199 1.21978 0.89701 1.50103 1.04860 0.91910 1.25594 0.96587 0.91645 1.02068 1.70871 1.13907 1.36414 1.30566 0.84234 0.76061 0.77659 0.76483 1.20838 1.20684 1.19921 1.46233 1.14319 1.56111 1.18269 1.20182 0.82910 0.79604 0.88778 1.90702 1.50566 1.59347 1.41152 1.20207 0.89310 1.02416 0.98781 1.21600 0.86844 0.91540 1.03180 1.21497 0.95788 0.98001 1.06954 1.21758 0.95008 0.99331 1.07053 1.23911 0.91477 0.90519 1.05500 1.83982 1.14295 1.41715 1.66918 0.95129 0.93079 0.93281 0.93163 0.91889 0.91864 0.77395 0.86328 0.87637 0.83706 0.83719 0.78402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.53 37.16 0.32 -2.68 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.10 16 3 C 0.25 5.95 1.84 -69.09 -0.13 5.82 16 4 H 0.04 1.04 6.12 -51.93 -0.32 0.72 16 5 C -0.63 -16.76 8.92 -34.44 -0.31 -17.07 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 7 C 0.05 1.38 5.15 -17.82 -0.09 1.28 16 8 N -0.89 -25.97 13.70 55.43 0.76 -25.21 16 9 Si 1.03 25.04 26.56 -169.99 -4.51 20.52 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.35 6.34 56.52 0.36 -6.00 16 13 N -0.70 -13.72 5.03 -54.93 -0.28 -13.99 16 14 C 0.50 9.33 6.42 -10.98 -0.07 9.26 16 15 O -0.54 -12.10 13.18 5.55 0.07 -12.02 16 16 C -0.07 -0.91 6.23 -29.03 -0.18 -1.10 16 17 C 0.02 0.29 5.81 -35.62 -0.21 0.08 16 18 C -0.20 -2.90 10.81 -39.70 -0.43 -3.33 16 19 C -0.21 -2.69 10.91 -39.70 -0.43 -3.12 16 20 C -0.05 -0.57 12.09 29.42 0.36 -0.22 16 21 O -0.17 -2.64 10.65 5.71 0.06 -2.58 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 1.12 7.89 -51.93 -0.41 0.71 16 24 H 0.05 1.01 5.63 -51.93 -0.29 0.72 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.06 1.49 5.77 -51.93 -0.30 1.19 16 27 H 0.27 7.84 8.73 -40.82 -0.36 7.48 16 28 H 0.39 6.67 8.53 -40.82 -0.35 6.32 16 29 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.15 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.20 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 279.12 15.07 4.21 4.21 Total: -1.00 -32.21 279.12 -5.25 -37.46 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.24 Total: 5.78 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.32 Total: -14.16 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.48 Total: -39.21 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.13 Total: -14.60 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.51 Total: 20.52 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.21 -5.25 -37.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273871967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.341 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds