Wall clock time and date at job start Sun Mar 29 2020 22:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.34515 * 125.78698 * 90.00172 * 17 16 14 19 19 C 1.41386 * 106.84011 * 180.02562 * 18 17 16 20 20 C 1.34515 * 106.83775 * 359.97438 * 19 18 17 21 21 O 1.34303 * 125.78985 * 269.70027 * 17 16 14 22 22 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 24 24 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 25 25 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 26 26 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 27 27 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 28 28 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 29 29 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 30 30 H 1.09006 * 109.46710 * 60.00529 * 16 14 13 31 31 H 1.07996 * 126.58362 * 359.96051 * 18 17 16 32 32 H 1.07998 * 126.57822 * 179.97438 * 19 18 17 33 33 H 1.08001 * 125.78416 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3313 3.8751 -2.5735 18 6 -1.6621 5.1065 -2.1448 19 6 -3.0721 5.1945 -2.2002 20 6 -3.5186 4.0118 -2.6599 21 8 -2.4595 3.2186 -2.8897 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8117 0.4042 0.4384 28 1 2.2954 2.1150 -1.9977 29 1 0.7620 4.1421 -2.8933 30 1 0.1091 2.5999 -3.4966 31 1 -0.9813 5.8793 -1.8196 32 1 -3.6750 6.0476 -1.9259 33 1 -4.5530 3.7468 -2.8214 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273871967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:34 Heat of formation + Delta-G solvation = -54.427942 kcal Electronic energy + Delta-G solvation = -16818.141137 eV Core-core repulsion = 14037.464001 eV Total energy + Delta-G solvation = -2780.677136 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.44627 -40.69730 -37.08140 -34.48338 -34.12611 -33.49778 -32.45009 -29.33183 -27.73511 -24.34039 -22.75041 -22.61098 -21.39942 -21.10254 -19.82048 -18.27222 -17.99318 -17.13116 -16.63637 -16.46243 -15.59848 -15.35103 -14.90060 -14.49624 -14.37471 -14.33695 -13.71392 -13.67323 -13.50152 -13.39521 -12.70573 -12.62313 -12.49278 -12.28371 -11.77959 -11.58861 -11.22952 -10.85388 -10.75978 -10.40505 -9.78979 -9.35408 -8.80300 -6.39630 0.80295 1.46233 1.48029 1.68894 1.72667 1.77350 2.10902 2.42011 2.65442 2.93455 3.67863 4.06200 4.17014 4.18822 4.30405 4.38514 4.40743 4.48948 4.55130 4.85774 4.95373 5.04330 5.07753 5.20095 5.24319 5.30171 5.54186 5.65032 5.69561 5.72196 6.04294 6.24052 6.56383 6.87382 7.28029 7.47573 8.56396 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.041569 B = 0.006020 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.412027 B = 4650.298437 C = 4706.298472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.254 3.746 4 H 0.019 0.981 5 C -0.625 4.625 6 H 0.045 0.955 7 C 0.009 3.991 8 N -0.916 5.916 9 Si 1.060 2.940 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.258 1.258 13 N -0.701 5.701 14 C 0.500 3.500 15 O -0.579 6.579 16 C -0.055 4.055 17 C -0.010 4.010 18 C -0.215 4.215 19 C -0.227 4.227 20 C -0.045 4.045 21 O -0.193 6.193 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.263 0.737 28 H 0.406 0.594 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.169 0.831 33 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.186 6.225 -9.792 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.150 3.850 4 H 0.036 0.964 5 C -0.662 4.662 6 H 0.064 0.936 7 C -0.195 4.195 8 N -0.549 5.549 9 Si 0.883 3.117 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.183 1.183 13 N -0.351 5.351 14 C 0.287 3.713 15 O -0.459 6.459 16 C -0.094 4.094 17 C -0.061 4.061 18 C -0.234 4.234 19 C -0.245 4.245 20 C -0.112 4.112 21 O -0.090 6.090 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.241 0.759 29 H 0.167 0.833 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.186 0.814 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -14.573 5.610 -7.628 17.379 hybrid contribution 0.631 0.489 -1.747 1.921 sum -13.942 6.099 -9.375 17.873 Atomic orbital electron populations 1.21753 0.95795 1.00165 1.01211 1.22123 0.94975 0.98592 1.00983 1.18695 0.93527 0.89401 0.83419 0.96367 1.22150 0.91368 1.48670 1.04025 0.93633 1.26577 0.96705 0.91356 1.04832 1.70955 1.15030 1.38821 1.30117 0.83800 0.75787 0.78209 0.73891 1.20581 1.20080 1.18280 1.46050 1.15415 1.56286 1.17306 1.20978 0.81660 0.78556 0.90087 1.90681 1.51526 1.60635 1.43079 1.20196 0.89413 1.03625 0.96172 1.21855 0.87379 0.92097 1.04737 1.21849 0.97038 0.98156 1.06395 1.22140 0.94632 1.00499 1.07272 1.24763 0.92419 0.90088 1.03894 1.83970 1.14978 1.42630 1.67381 0.92686 0.94586 0.93275 0.92575 0.93256 0.92792 0.75881 0.83298 0.84975 0.82960 0.81354 0.74649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.53 71.98 0.61 -4.67 16 2 C -0.13 -5.63 5.37 30.60 0.16 -5.46 16 3 C 0.25 11.94 1.84 44.25 0.08 12.02 16 4 H 0.02 0.96 6.12 -2.39 -0.01 0.94 16 5 C -0.62 -33.38 8.92 25.60 0.23 -33.15 16 6 H 0.05 2.54 7.96 -2.91 -0.02 2.52 16 7 C 0.01 0.48 5.15 84.66 0.44 0.91 16 8 N -0.92 -54.35 13.70 21.45 0.29 -54.06 16 9 Si 1.06 50.48 26.56 68.60 1.82 52.30 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.26 -11.56 6.34 99.48 0.63 -10.93 16 13 N -0.70 -26.61 5.03 -446.10 -2.24 -28.85 16 14 C 0.50 17.88 6.42 87.66 0.56 18.44 16 15 O -0.58 -25.46 13.18 -3.04 -0.04 -25.50 16 16 C -0.05 -1.36 6.23 29.10 0.18 -1.18 16 17 C -0.01 -0.30 5.81 24.83 0.14 -0.15 16 18 C -0.22 -5.78 10.81 22.19 0.24 -5.54 16 19 C -0.23 -5.21 10.91 22.19 0.24 -4.97 16 20 C -0.04 -0.99 12.09 66.97 0.81 -0.18 16 21 O -0.19 -5.51 10.65 -2.49 -0.03 -5.53 16 22 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 23 H 0.03 1.53 7.89 -2.39 -0.02 1.51 16 24 H 0.05 1.95 5.63 -2.39 -0.01 1.94 16 25 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.05 2.29 5.77 -2.39 -0.01 2.27 16 27 H 0.26 15.52 8.73 -92.71 -0.81 14.71 16 28 H 0.41 13.20 8.53 -92.71 -0.79 12.41 16 29 H 0.15 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 31 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.24 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -69.45 279.12 3.72 -65.73 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.21 Total: 19.84 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 3.70 Total: -23.93 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -1.95 Total: -82.91 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.07 Total: -31.03 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 1.82 Total: 52.30 kcal Total: -69.45 3.72 -65.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273871967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.300 kcal (2) G-P(sol) polarization free energy of solvation -69.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds