Wall clock time and date at job start Sun Mar 29 2020 22:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47075 * 2 1 4 4 N 1.46495 * 109.47314 * 120.00332 * 2 1 3 5 5 C 1.46501 * 119.99967 * 295.10578 * 4 2 1 6 6 C 1.50697 * 109.47380 * 89.99867 * 5 4 2 7 7 C 1.34513 * 125.79262 * 89.99837 * 6 5 4 8 8 C 1.41382 * 106.84125 * 180.02562 * 7 6 5 9 9 C 1.34513 * 106.84206 * 359.97438 * 8 7 6 10 10 O 1.34303 * 108.41822 * 359.73877 * 9 8 7 11 11 C 1.34773 * 120.00201 * 115.09888 * 4 2 1 12 12 O 1.21693 * 120.00239 * 185.44351 * 11 4 2 13 13 C 1.46377 * 119.99919 * 5.44846 * 11 4 2 14 14 H 1.07997 * 119.99707 * 5.34681 * 13 11 4 15 15 C 1.40053 * 119.99912 * 185.34946 * 13 11 4 16 16 N 1.30673 * 120.00138 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99775 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47459 * 59.99876 * 17 15 13 19 19 H 1.48498 * 109.47344 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47451 * 300.00128 * 17 15 13 21 21 H 1.09004 * 109.46829 * 305.29490 * 1 2 3 22 22 H 1.08998 * 109.47023 * 65.29236 * 1 2 3 23 23 H 1.08998 * 109.46951 * 185.29914 * 1 2 3 24 24 H 1.09002 * 109.46596 * 240.00400 * 2 1 3 25 25 H 1.08997 * 109.46805 * 174.89835 * 3 2 1 26 26 H 1.08995 * 109.47319 * 294.89822 * 3 2 1 27 27 H 1.08998 * 109.47491 * 54.89990 * 3 2 1 28 28 H 1.08999 * 109.47070 * 209.99737 * 5 4 2 29 29 H 1.08998 * 109.46934 * 329.99832 * 5 4 2 30 30 H 1.08000 * 126.57646 * 0.03865 * 7 6 5 31 31 H 1.08002 * 126.57822 * 179.97438 * 8 7 6 32 32 H 1.08000 * 125.78982 * 180.02562 * 9 8 7 33 33 H 0.96991 * 119.99682 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7551 -0.1308 2.5240 6 6 0.4518 -0.6753 3.0494 7 6 0.3047 -1.7942 3.7812 8 6 -1.0762 -1.9264 4.0543 9 6 -1.6903 -0.8800 3.4735 10 8 -0.7591 -0.1223 2.8714 11 6 2.7099 -1.8411 1.0748 12 8 3.0298 -2.4664 2.0686 13 6 3.0761 -2.3385 -0.2522 14 1 2.8689 -1.7422 -1.1285 15 6 3.6952 -3.5877 -0.3855 16 7 3.9454 -4.3094 0.6747 17 14 4.1619 -4.2227 -2.0791 18 1 5.1161 -3.2796 -2.7158 19 1 4.7977 -5.5584 -1.9491 20 1 2.9425 -4.3352 -2.9191 21 1 -0.3633 0.5938 0.8388 22 1 -0.3633 0.4295 -0.9336 23 1 -0.3633 -1.0233 0.0949 24 1 1.8933 -0.5138 -0.8901 25 1 3.1262 1.4438 0.0914 26 1 1.7533 1.9292 -0.9321 27 1 1.6041 1.9820 0.8407 28 1 2.5634 -0.4065 3.2013 29 1 1.6936 0.9552 2.4548 30 1 1.0906 -2.4632 4.0994 31 1 -1.5476 -2.7161 4.6206 32 1 -2.7515 -0.6804 3.4924 33 1 4.3745 -5.1743 0.5823 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274635043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:49 Heat of formation + Delta-G solvation = -20.047647 kcal Electronic energy + Delta-G solvation = -17404.007363 eV Core-core repulsion = 14624.821069 eV Total energy + Delta-G solvation = -2779.186294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.97248 -38.09726 -35.02319 -32.76243 -32.37952 -31.27502 -29.25079 -26.88154 -26.54674 -24.67685 -21.18965 -20.81676 -20.29609 -18.95249 -16.88681 -16.55920 -15.64882 -15.44464 -14.43222 -14.36694 -14.23519 -13.24045 -13.18124 -12.67857 -12.40244 -12.27037 -12.09370 -11.69538 -11.68943 -11.50152 -11.19167 -11.04838 -10.94847 -10.60303 -10.46046 -10.27373 -9.69469 -9.33663 -8.86118 -8.04625 -7.52519 -7.36046 -6.20825 -4.65817 2.26177 3.14414 3.18278 3.20200 3.22831 3.54311 4.08862 4.55042 4.58120 5.25144 5.47500 5.54296 5.60537 5.62287 5.78464 5.89881 6.04058 6.08503 6.24625 6.28415 6.29617 6.39861 6.49176 6.61933 6.66754 6.78962 6.90852 7.11558 7.45153 7.57444 7.76621 8.10882 8.30305 9.00826 9.38775 10.55309 10.73731 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.008669 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.565065 B = 3229.002104 C = 3754.995350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 C -0.160 4.160 4 N -0.629 5.629 5 C 0.202 3.798 6 C -0.011 4.011 7 C -0.194 4.194 8 C -0.214 4.214 9 C -0.065 4.065 10 O -0.178 6.178 11 C 0.560 3.440 12 O -0.571 6.571 13 C -0.543 4.543 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.766 5.766 17 Si 0.905 3.095 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.268 1.268 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.193 0.807 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 7.931 0.395 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 C -0.218 4.218 4 N -0.366 5.366 5 C 0.077 3.923 6 C -0.063 4.063 7 C -0.214 4.214 8 C -0.233 4.233 9 C -0.133 4.133 10 O -0.075 6.075 11 C 0.366 3.634 12 O -0.453 6.453 13 C -0.579 4.579 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.395 5.395 17 Si 0.730 3.270 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.193 1.193 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.121 0.879 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.209 0.791 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.965 7.663 0.855 10.391 hybrid contribution -0.098 -0.643 -0.741 0.986 sum -7.064 7.020 0.115 9.959 Atomic orbital electron populations 1.22218 0.96922 1.01958 1.00773 1.20996 0.92805 0.92211 0.90824 1.22175 1.01605 0.97146 1.00900 1.48293 1.59010 1.26966 1.02356 1.19461 0.88323 0.96651 0.87877 1.23491 0.85836 0.96233 1.00712 1.21708 0.96670 0.99211 1.03797 1.21808 0.94638 1.00895 1.05957 1.23789 0.94176 0.94025 1.01306 1.83998 1.15840 1.46951 1.60682 1.18267 0.76724 0.77605 0.90829 1.90592 1.58207 1.56606 1.39911 1.20941 1.41615 1.03577 0.91803 0.90936 1.25712 0.93679 0.96288 0.97480 1.69993 1.30337 1.09732 1.29442 0.86475 0.79339 0.78311 0.82920 1.19210 1.20555 1.19286 0.92493 0.93147 0.92807 0.87872 0.92300 0.92621 0.93250 0.88124 0.91063 0.83336 0.84303 0.79070 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 8.44 37.16 0.31 -2.44 16 2 C 0.14 2.56 3.16 -67.93 -0.21 2.35 16 3 C -0.16 -2.44 8.94 37.15 0.33 -2.11 16 4 N -0.63 -14.06 2.39 -169.12 -0.40 -14.46 16 5 C 0.20 4.00 5.49 -5.19 -0.03 3.97 16 6 C -0.01 -0.22 6.11 -35.63 -0.22 -0.44 16 7 C -0.19 -3.96 10.81 -39.70 -0.43 -4.39 16 8 C -0.21 -3.65 10.91 -39.70 -0.43 -4.08 16 9 C -0.07 -1.01 12.09 29.42 0.36 -0.65 16 10 O -0.18 -3.17 8.53 5.71 0.05 -3.12 16 11 C 0.56 15.53 7.58 -12.99 -0.10 15.43 16 12 O -0.57 -17.78 14.68 5.20 0.08 -17.71 16 13 C -0.54 -14.97 8.82 -35.63 -0.31 -15.29 16 14 H 0.07 1.83 5.64 -52.49 -0.30 1.53 16 15 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 16 N -0.77 -22.64 11.84 55.55 0.66 -21.98 16 17 Si 0.90 19.94 29.56 -169.99 -5.02 14.92 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H 0.06 0.95 5.84 -51.93 -0.30 0.65 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.10 2.08 5.20 -51.93 -0.27 1.81 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.70 6.77 -51.93 -0.35 0.35 16 28 H 0.10 2.11 7.50 -51.93 -0.39 1.72 16 29 H 0.07 1.19 6.30 -51.93 -0.33 0.87 16 30 H 0.15 3.29 8.06 -52.49 -0.42 2.87 16 31 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.19 2.09 8.06 -52.49 -0.42 1.66 16 33 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 LS Contribution 278.45 15.07 4.20 4.20 Total: -1.00 -32.80 278.45 -5.31 -38.11 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.03 Total: 5.37 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.83 Total: -5.32 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.25 Total: -36.44 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.12 Total: -20.83 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.80 -5.31 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274635043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.058 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds