Wall clock time and date at job start Sun Mar 29 2020 22:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47075 * 2 1 4 4 N 1.46495 * 109.47314 * 120.00332 * 2 1 3 5 5 C 1.46501 * 119.99967 * 295.10578 * 4 2 1 6 6 C 1.50697 * 109.47380 * 89.99867 * 5 4 2 7 7 C 1.34513 * 125.79262 * 89.99837 * 6 5 4 8 8 C 1.41382 * 106.84125 * 180.02562 * 7 6 5 9 9 C 1.34513 * 106.84206 * 359.97438 * 8 7 6 10 10 O 1.34303 * 108.41822 * 359.73877 * 9 8 7 11 11 C 1.34773 * 120.00201 * 115.09888 * 4 2 1 12 12 O 1.21693 * 120.00239 * 185.44351 * 11 4 2 13 13 C 1.46377 * 119.99919 * 5.44846 * 11 4 2 14 14 H 1.07997 * 119.99707 * 5.34681 * 13 11 4 15 15 C 1.40053 * 119.99912 * 185.34946 * 13 11 4 16 16 N 1.30673 * 120.00138 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99775 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47459 * 59.99876 * 17 15 13 19 19 H 1.48498 * 109.47344 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47451 * 300.00128 * 17 15 13 21 21 H 1.09004 * 109.46829 * 305.29490 * 1 2 3 22 22 H 1.08998 * 109.47023 * 65.29236 * 1 2 3 23 23 H 1.08998 * 109.46951 * 185.29914 * 1 2 3 24 24 H 1.09002 * 109.46596 * 240.00400 * 2 1 3 25 25 H 1.08997 * 109.46805 * 174.89835 * 3 2 1 26 26 H 1.08995 * 109.47319 * 294.89822 * 3 2 1 27 27 H 1.08998 * 109.47491 * 54.89990 * 3 2 1 28 28 H 1.08999 * 109.47070 * 209.99737 * 5 4 2 29 29 H 1.08998 * 109.46934 * 329.99832 * 5 4 2 30 30 H 1.08000 * 126.57646 * 0.03865 * 7 6 5 31 31 H 1.08002 * 126.57822 * 179.97438 * 8 7 6 32 32 H 1.08000 * 125.78982 * 180.02562 * 9 8 7 33 33 H 0.96991 * 119.99682 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7551 -0.1308 2.5240 6 6 0.4518 -0.6753 3.0494 7 6 0.3047 -1.7942 3.7812 8 6 -1.0762 -1.9264 4.0543 9 6 -1.6903 -0.8800 3.4735 10 8 -0.7591 -0.1223 2.8714 11 6 2.7099 -1.8411 1.0748 12 8 3.0298 -2.4664 2.0686 13 6 3.0761 -2.3385 -0.2522 14 1 2.8689 -1.7422 -1.1285 15 6 3.6952 -3.5877 -0.3855 16 7 3.9454 -4.3094 0.6747 17 14 4.1619 -4.2227 -2.0791 18 1 5.1161 -3.2796 -2.7158 19 1 4.7977 -5.5584 -1.9491 20 1 2.9425 -4.3352 -2.9191 21 1 -0.3633 0.5938 0.8388 22 1 -0.3633 0.4295 -0.9336 23 1 -0.3633 -1.0233 0.0949 24 1 1.8933 -0.5138 -0.8901 25 1 3.1262 1.4438 0.0914 26 1 1.7533 1.9292 -0.9321 27 1 1.6041 1.9820 0.8407 28 1 2.5634 -0.4065 3.2013 29 1 1.6936 0.9552 2.4548 30 1 1.0906 -2.4632 4.0994 31 1 -1.5476 -2.7161 4.6206 32 1 -2.7515 -0.6804 3.4924 33 1 4.3745 -5.1743 0.5823 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274635043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:48 Heat of formation + Delta-G solvation = -41.522161 kcal Electronic energy + Delta-G solvation = -17404.938568 eV Core-core repulsion = 14624.821069 eV Total energy + Delta-G solvation = -2780.117499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.39706 -39.93537 -36.90812 -34.72905 -33.94292 -32.81710 -30.92974 -28.69445 -27.92794 -26.39874 -22.67333 -22.47620 -21.85355 -20.66582 -18.51397 -18.12112 -17.72004 -16.91897 -16.16157 -16.04985 -15.80027 -14.79005 -14.73375 -14.50630 -13.78935 -13.77759 -13.60123 -13.47033 -13.18954 -13.04132 -12.95418 -12.71770 -12.59817 -12.16225 -12.05388 -12.00368 -11.35198 -10.90705 -10.79151 -9.84383 -9.36602 -9.14394 -8.26909 -6.81731 0.84502 1.39119 1.42204 1.53247 1.73392 2.13112 2.24768 2.50780 2.90469 3.61313 3.90860 4.08293 4.17933 4.19572 4.37201 4.47928 4.54284 4.66327 4.84829 4.86843 4.95911 5.05047 5.10140 5.13873 5.25864 5.33829 5.47070 5.53111 5.63787 5.80762 6.15397 6.30679 6.37885 6.89762 7.42492 8.48977 8.68737 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.008669 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.565065 B = 3229.002104 C = 3754.995350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.126 3.874 3 C -0.150 4.150 4 N -0.629 5.629 5 C 0.203 3.797 6 C -0.024 4.024 7 C -0.224 4.224 8 C -0.233 4.233 9 C -0.038 4.038 10 O -0.175 6.175 11 C 0.544 3.456 12 O -0.621 6.621 13 C -0.568 4.568 14 H 0.092 0.908 15 C 0.030 3.970 16 N -0.821 5.821 17 Si 0.990 3.010 18 H -0.252 1.252 19 H -0.276 1.276 20 H -0.255 1.255 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.022 0.978 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.162 0.838 32 H 0.247 0.753 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.112 9.707 -1.539 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.208 4.208 4 N -0.364 5.364 5 C 0.078 3.922 6 C -0.076 4.076 7 C -0.245 4.245 8 C -0.252 4.252 9 C -0.105 4.105 10 O -0.071 6.071 11 C 0.350 3.650 12 O -0.507 6.507 13 C -0.604 4.604 14 H 0.110 0.890 15 C -0.185 4.185 16 N -0.451 5.451 17 Si 0.810 3.190 18 H -0.176 1.176 19 H -0.201 1.201 20 H -0.179 1.179 21 H 0.083 0.917 22 H 0.102 0.898 23 H 0.041 0.959 24 H 0.104 0.896 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.179 0.821 32 H 0.263 0.737 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.902 9.502 -1.091 13.066 hybrid contribution 0.399 -1.141 -0.066 1.211 sum -8.503 8.360 -1.157 11.981 Atomic orbital electron populations 1.22104 0.95279 1.00390 1.02858 1.21253 0.94086 0.93834 0.88516 1.22078 1.00851 0.94616 1.03220 1.48110 1.57979 1.25794 1.04540 1.19474 0.88037 0.98402 0.86240 1.23198 0.86610 0.96382 1.01372 1.21725 0.98015 0.99495 1.05220 1.22073 0.92977 1.02745 1.07364 1.24780 0.95640 0.92051 0.98018 1.83993 1.15288 1.47042 1.60814 1.18622 0.77025 0.78805 0.90581 1.90549 1.60236 1.58700 1.41226 1.21475 1.41946 1.04459 0.92570 0.88996 1.26937 0.92942 0.96251 1.02374 1.70179 1.31722 1.10441 1.32730 0.85177 0.79524 0.77715 0.76595 1.17635 1.20126 1.17919 0.91747 0.89817 0.95904 0.89580 0.93387 0.89486 0.91824 0.90594 0.87468 0.86774 0.82054 0.73672 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 8.44 71.98 0.61 -4.13 16 2 C 0.13 4.59 3.16 44.99 0.14 4.73 16 3 C -0.15 -4.14 8.94 71.98 0.64 -3.49 16 4 N -0.63 -28.59 2.39 -807.21 -1.93 -30.51 16 5 C 0.20 8.18 5.49 85.63 0.47 8.65 16 6 C -0.02 -0.96 6.11 24.83 0.15 -0.80 16 7 C -0.22 -9.54 10.81 22.19 0.24 -9.30 16 8 C -0.23 -7.72 10.91 22.19 0.24 -7.47 16 9 C -0.04 -1.05 12.09 66.97 0.81 -0.24 16 10 O -0.18 -5.84 8.53 -2.50 -0.02 -5.86 16 11 C 0.54 31.48 7.58 86.36 0.65 32.13 16 12 O -0.62 -41.20 14.68 -4.32 -0.06 -41.26 16 13 C -0.57 -32.07 8.82 24.83 0.22 -31.85 16 14 H 0.09 4.65 5.64 -2.91 -0.02 4.63 16 15 C 0.03 1.68 5.50 85.31 0.47 2.15 16 16 N -0.82 -50.58 11.84 21.84 0.26 -50.32 16 17 Si 0.99 41.13 29.56 68.60 2.03 43.16 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 21 H 0.06 1.95 5.84 -2.38 -0.01 1.94 16 22 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.09 3.40 5.20 -2.39 -0.01 3.38 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 1.58 6.77 -2.39 -0.02 1.56 16 28 H 0.08 3.40 7.50 -2.39 -0.02 3.38 16 29 H 0.11 3.46 6.30 -2.39 -0.02 3.44 16 30 H 0.11 5.58 8.06 -2.91 -0.02 5.56 16 31 H 0.16 4.46 8.06 -2.91 -0.02 4.43 16 32 H 0.25 3.94 8.06 -2.91 -0.02 3.91 16 33 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 Total: -1.00 -76.29 278.45 6.04 -70.26 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 1.11 Total: 24.17 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.65 Total: -9.62 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -1.67 Total: -80.83 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.08 Total: -47.12 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -76.29 6.04 -70.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274635043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.735 kcal (2) G-P(sol) polarization free energy of solvation -76.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds