Wall clock time and date at job start Sun Mar 29 2020 22:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46997 * 2 1 4 4 C 1.50704 * 109.46768 * 119.99686 * 2 1 3 5 5 O 1.33669 * 125.81188 * 300.29293 * 4 2 1 6 6 C 1.34225 * 110.90924 * 180.13452 * 5 4 2 7 7 C 1.34167 * 109.14297 * 359.61535 * 6 5 4 8 8 C 1.36500 * 125.80630 * 119.99983 * 4 2 1 9 9 C 1.47296 * 127.19863 * 0.02562 * 8 4 2 10 10 O 1.21645 * 120.00071 * 310.94718 * 9 8 4 11 11 N 1.34777 * 120.00058 * 130.94624 * 9 8 4 12 12 C 1.46502 * 119.99694 * 4.21041 * 11 9 8 13 13 C 1.36957 * 120.00190 * 184.20462 * 11 9 8 14 14 H 1.08000 * 119.99713 * 8.24242 * 13 11 9 15 15 C 1.38978 * 120.00088 * 188.23616 * 13 11 9 16 16 N 1.31406 * 120.00137 * 8.37674 * 15 13 11 17 17 Si 1.86802 * 120.00007 * 188.37943 * 15 13 11 18 18 H 1.48489 * 109.47428 * 90.00081 * 17 15 13 19 19 H 1.48505 * 109.47043 * 210.00502 * 17 15 13 20 20 H 1.48505 * 109.46998 * 329.99690 * 17 15 13 21 21 H 1.09001 * 109.47378 * 299.99970 * 1 2 3 22 22 H 1.09002 * 109.47108 * 60.00315 * 1 2 3 23 23 H 1.09003 * 109.47348 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46896 * 239.99645 * 2 1 3 25 25 H 1.09001 * 109.47032 * 59.99818 * 3 2 1 26 26 H 1.09001 * 109.47123 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47010 * 300.00156 * 3 2 1 28 28 H 1.07996 * 125.42391 * 179.87268 * 6 5 4 29 29 H 1.07997 * 127.01931 * 180.25011 * 7 6 5 30 30 H 1.08999 * 109.47637 * 354.19307 * 12 11 9 31 31 H 1.08998 * 109.47786 * 114.19880 * 12 11 9 32 32 H 1.09006 * 109.46663 * 234.19641 * 12 11 9 33 33 H 0.96999 * 120.00355 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.7774 -0.3596 2.4950 6 6 2.3763 -1.1984 3.3548 7 6 3.0404 -2.1370 2.6634 8 6 2.8203 -1.8249 1.2436 9 6 3.3413 -2.5608 0.0788 10 8 2.5917 -2.8782 -0.8251 11 7 4.6485 -2.8825 0.0146 12 6 5.5330 -2.5824 1.1433 13 6 5.1500 -3.4900 -1.1057 14 1 4.5336 -3.5914 -1.9868 15 6 6.4520 -3.9760 -1.1089 16 7 7.1460 -4.0029 0.0067 17 14 7.2157 -4.5909 -2.6989 18 1 7.8980 -3.4662 -3.3877 19 1 8.2035 -5.6570 -2.3938 20 1 6.1525 -5.1386 -3.5792 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 2.3275 -1.1311 4.4316 29 1 3.6182 -2.9551 3.0673 30 1 4.9846 -2.0121 1.8931 31 1 5.8889 -3.5137 1.5838 32 1 6.3837 -1.9979 0.7928 33 1 8.0546 -4.3424 0.0046 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280822652.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:07 Heat of formation + Delta-G solvation = -35.527421 kcal Electronic energy + Delta-G solvation = -17172.966764 eV Core-core repulsion = 14393.109216 eV Total energy + Delta-G solvation = -2779.857548 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.43790 -40.13096 -36.89217 -36.28173 -34.15532 -33.13007 -29.99971 -28.38559 -28.07344 -26.67390 -24.03518 -23.34859 -21.62978 -19.85380 -19.05494 -18.34113 -17.35423 -16.90956 -16.33852 -16.08978 -15.87342 -15.50830 -15.26397 -14.38774 -14.10951 -14.02589 -13.79821 -13.39056 -13.34254 -13.04832 -12.88140 -12.66535 -12.36780 -12.20041 -12.17884 -12.11334 -11.86645 -11.10958 -10.69152 -10.38607 -9.91812 -9.42705 -8.30064 -5.97347 0.66504 1.25037 1.37955 1.42929 1.51898 1.97102 2.16858 2.25990 3.05148 3.14683 3.57855 3.96342 4.00053 4.15174 4.19323 4.39095 4.57556 4.70307 4.75961 4.76842 4.89208 4.94856 5.03057 5.09514 5.17915 5.30190 5.31570 5.38045 5.44919 5.49626 5.97280 6.20227 6.43609 7.09320 7.40921 7.97444 8.61928 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032591 B = 0.007482 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.922377 B = 3741.600055 C = 4210.552133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 C -0.137 4.137 4 C 0.044 3.956 5 O -0.172 6.172 6 C -0.018 4.018 7 C -0.214 4.214 8 C -0.236 4.236 9 C 0.493 3.507 10 O -0.637 6.637 11 N -0.449 5.449 12 C 0.120 3.880 13 C -0.345 4.345 14 H 0.078 0.922 15 C -0.005 4.005 16 N -0.894 5.894 17 Si 0.998 3.002 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.274 1.274 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.259 0.741 29 H 0.158 0.842 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 9.195 6.929 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 C -0.194 4.194 4 C -0.009 4.009 5 O -0.068 6.068 6 C -0.083 4.083 7 C -0.233 4.233 8 C -0.241 4.241 9 C 0.284 3.716 10 O -0.527 6.527 11 N -0.165 5.165 12 C -0.022 4.022 13 C -0.473 4.473 14 H 0.096 0.904 15 C -0.206 4.206 16 N -0.533 5.533 17 Si 0.820 3.180 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.199 1.199 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.275 0.725 29 H 0.176 0.824 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.322 9.209 6.658 13.004 hybrid contribution 0.899 -1.062 -0.757 1.584 sum -5.423 8.148 5.901 11.429 Atomic orbital electron populations 1.21760 0.91613 1.01889 1.03871 1.19933 0.98117 0.96634 0.89571 1.21815 1.00674 0.92900 1.04037 1.22691 0.97894 0.95342 0.84942 1.83680 1.59870 1.48847 1.14418 1.24648 0.96808 0.90114 0.96772 1.23030 1.06191 1.03786 0.90315 1.21351 1.07202 1.00782 0.94742 1.17626 0.82013 0.84921 0.87050 1.90537 1.57921 1.61402 1.42871 1.43810 1.06738 1.50006 1.15955 1.21818 0.91954 1.00943 0.87502 1.19798 0.98064 1.36780 0.92646 0.90379 1.26174 0.96172 0.96162 1.02127 1.70204 1.11561 1.45012 1.26563 0.84872 0.77812 0.78321 0.76947 1.19123 1.19171 1.19920 0.90568 0.89650 0.94042 0.91027 0.90492 0.93721 0.89609 0.72547 0.82425 0.91411 0.91501 0.94341 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.18 71.98 0.66 -2.91 16 2 C -0.02 -0.79 3.28 -11.54 -0.04 -0.83 16 3 C -0.14 -3.51 9.18 71.98 0.66 -2.85 16 4 C 0.04 1.61 5.89 25.28 0.15 1.76 16 5 O -0.17 -5.17 10.52 4.22 0.04 -5.13 16 6 C -0.02 -0.47 12.03 66.89 0.80 0.34 16 7 C -0.21 -7.36 8.74 23.65 0.21 -7.15 16 8 C -0.24 -10.35 5.25 -18.99 -0.10 -10.45 16 9 C 0.49 27.18 7.08 86.63 0.61 27.79 16 10 O -0.64 -39.33 15.85 -4.17 -0.07 -39.39 16 11 N -0.45 -25.35 3.02 -662.76 -2.00 -27.35 16 12 C 0.12 5.91 8.43 127.77 1.08 6.99 16 13 C -0.35 -20.69 9.52 84.07 0.80 -19.89 16 14 H 0.08 4.96 7.22 -2.91 -0.02 4.94 16 15 C -0.01 -0.28 5.37 84.93 0.46 0.18 16 16 N -0.89 -48.12 9.70 21.67 0.21 -47.91 16 17 Si 1.00 43.41 29.56 68.60 2.03 45.44 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 22 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 2.94 6.83 -2.39 -0.02 2.93 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.26 3.42 8.06 -2.91 -0.02 3.40 16 29 H 0.16 5.14 7.72 -2.91 -0.02 5.12 16 30 H 0.07 2.87 4.35 -2.39 -0.01 2.86 16 31 H 0.07 3.42 6.70 -2.39 -0.02 3.40 16 32 H 0.04 1.95 7.48 -2.38 -0.02 1.93 16 33 H 0.27 13.68 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -73.06 279.43 6.61 -66.45 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.11 Total: 14.91 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 5.29 Total: -7.02 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.79 Total: -75.26 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.02 Total: -44.52 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -73.06 6.61 -66.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280822652.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.926 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds