Wall clock time and date at job start Sun Mar 29 2020 22:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46943 * 120.03276 * 3 2 1 5 5 C 1.37096 * 119.99973 * 274.38772 * 4 3 2 6 6 H 1.07997 * 119.99599 * 133.55067 * 5 4 3 7 7 C 1.38946 * 120.00035 * 313.54776 * 5 4 3 8 8 N 1.31415 * 120.00171 * 3.32437 * 7 5 4 9 9 Si 1.86799 * 119.99991 * 183.32896 * 7 5 4 10 10 H 1.48500 * 109.47576 * 89.99603 * 9 7 5 11 11 H 1.48496 * 109.47227 * 210.00252 * 9 7 5 12 12 H 1.48507 * 109.46908 * 329.99799 * 9 7 5 13 13 C 1.34779 * 119.99950 * 94.38798 * 4 3 2 14 14 O 1.21293 * 119.99751 * 5.33492 * 13 4 3 15 15 C 1.50692 * 120.00015 * 185.33702 * 13 4 3 16 16 C 1.53005 * 109.87380 * 81.12124 * 15 13 4 17 17 C 1.54106 * 109.87945 * 202.12823 * 15 13 4 18 18 C 1.54813 * 104.30528 * 117.47672 * 17 15 13 19 19 C 1.55224 * 101.98744 * 339.26086 * 18 17 15 20 20 O 1.43741 * 110.00416 * 320.03270 * 15 13 4 21 21 H 4.40644 * 5.51438 * 180.02562 * 4 1 2 22 22 H 1.08995 * 109.47357 * 0.03718 * 3 2 1 23 23 H 1.08998 * 109.47098 * 240.02942 * 3 2 1 24 24 H 0.96997 * 120.00033 * 179.97438 * 8 7 5 25 25 H 1.08990 * 109.47199 * 181.00427 * 16 15 13 26 26 H 1.08997 * 109.46740 * 301.01068 * 16 15 13 27 27 H 1.08996 * 109.46720 * 61.00693 * 16 15 13 28 28 H 1.08997 * 110.48900 * 236.21875 * 17 15 13 29 29 H 1.09003 * 110.48803 * 358.73338 * 17 15 13 30 30 H 1.09002 * 110.90569 * 97.38814 * 18 17 15 31 31 H 1.08995 * 110.90732 * 220.98566 * 18 17 15 32 32 H 1.08995 * 110.51998 * 278.38503 * 19 18 17 33 33 H 1.09001 * 110.77591 * 155.50165 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6922 -1.1958 5 6 3.2771 0.0060 -2.3740 6 1 2.9052 0.4306 -3.2947 7 6 3.9007 -1.2356 -2.3835 8 7 4.2948 -1.7817 -1.2550 9 14 4.1791 -2.1286 -4.0004 10 1 5.4980 -1.7389 -4.5607 11 1 4.1543 -3.5949 -3.7668 12 1 3.1061 -1.7620 -4.9595 13 6 3.4422 2.0030 -1.1376 14 8 3.4085 2.5873 -0.0752 15 6 3.8286 2.7426 -2.3924 16 6 2.5720 3.1422 -3.1685 17 6 4.6426 3.9999 -2.0300 18 6 6.0260 3.7613 -2.6825 19 6 6.0344 2.2199 -2.8659 20 8 4.6671 1.9129 -3.2138 21 1 -1.0501 0.0001 0.0003 22 1 3.0098 -1.0268 -0.0007 23 1 3.0091 0.5142 0.8902 24 1 4.7298 -2.6486 -1.2617 25 1 2.8594 3.6606 -4.0831 26 1 2.0016 2.2484 -3.4213 27 1 1.9599 3.8020 -2.5538 28 1 4.1732 4.8913 -2.4461 29 1 4.7416 4.0916 -0.9483 30 1 6.0945 4.2678 -3.6453 31 1 6.8294 4.0805 -2.0187 32 1 6.3139 1.7260 -1.9354 33 1 6.7097 1.9300 -3.6709 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281029766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:44 Heat of formation + Delta-G solvation = -16.218937 kcal Electronic energy + Delta-G solvation = -17844.725877 eV Core-core repulsion = 15065.705608 eV Total energy + Delta-G solvation = -2779.020269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76944 -37.36969 -35.06553 -32.34906 -31.57989 -31.46236 -30.64888 -26.58367 -25.43573 -24.68936 -22.10359 -20.85795 -18.93916 -17.92229 -16.84494 -15.90220 -15.52051 -15.10043 -14.65025 -14.38435 -13.81302 -13.30024 -12.97134 -12.73392 -12.59170 -11.88027 -11.86599 -11.57372 -11.37708 -11.17084 -11.07256 -10.82596 -10.72797 -10.36189 -10.35855 -10.15990 -9.64256 -9.51786 -9.23454 -8.92077 -8.17116 -7.50040 -6.21865 -4.05175 3.21148 3.28097 3.31168 3.52799 3.80195 3.80775 4.23586 4.48151 4.85672 5.07039 5.11189 5.23787 5.45184 5.49559 5.67065 5.90198 5.95009 6.03341 6.18384 6.25261 6.28870 6.43507 6.45905 6.58920 6.68826 6.76092 6.87109 7.27388 7.60069 7.65517 7.99775 8.45794 8.55329 9.15299 9.43506 9.87967 10.77295 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.013894 C = 0.009511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.755922 B = 2014.710034 C = 2943.371253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.143 4.143 3 C 0.184 3.816 4 N -0.427 5.427 5 C -0.296 4.296 6 H 0.093 0.907 7 C 0.042 3.958 8 N -0.886 5.886 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.271 1.271 13 C 0.470 3.530 14 O -0.599 6.599 15 C 0.105 3.895 16 C -0.137 4.137 17 C -0.140 4.140 18 C -0.154 4.154 19 C 0.044 3.956 20 O -0.324 6.324 21 H 0.206 0.794 22 H 0.150 0.850 23 H 0.078 0.922 24 H 0.269 0.731 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 5.654 -3.739 6.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.145 4.145 3 C 0.062 3.938 4 N -0.144 5.144 5 C -0.424 4.424 6 H 0.111 0.889 7 C -0.160 4.160 8 N -0.525 5.525 9 Si 0.751 3.249 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.196 1.196 13 C 0.258 3.742 14 O -0.484 6.484 15 C 0.062 3.938 16 C -0.194 4.194 17 C -0.178 4.178 18 C -0.192 4.192 19 C -0.033 4.033 20 O -0.241 6.241 21 H 0.223 0.777 22 H 0.167 0.833 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.911 5.564 -3.330 6.548 hybrid contribution -0.005 -0.470 -0.645 0.797 sum 0.906 5.095 -3.975 6.525 Atomic orbital electron populations 1.24559 0.95597 1.05302 1.03333 1.24454 0.95494 0.96848 0.97683 1.19051 0.81593 1.03787 0.89367 1.43314 1.54547 1.06621 1.09926 1.19409 1.35816 1.01483 0.85679 0.88935 1.25430 0.94897 0.97773 0.97896 1.69436 1.39734 1.17932 1.25433 0.85970 0.79116 0.77807 0.82000 1.20191 1.21293 1.19561 1.20900 0.79674 0.83924 0.89683 1.90510 1.58521 1.68582 1.30836 1.21885 0.92685 0.89436 0.89799 1.21832 0.95990 1.02046 0.99550 1.22935 0.94646 0.96963 1.03255 1.23182 0.97518 0.97708 1.00765 1.23496 0.86026 0.93017 1.00738 1.89190 1.14248 1.61341 1.59355 0.77731 0.83297 0.90364 0.92044 0.91869 0.91099 0.91839 0.90964 0.89029 0.91184 0.90910 0.92396 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.55 19.25 29.55 0.57 -4.98 16 2 C -0.14 -3.40 13.65 -37.12 -0.51 -3.91 16 3 C 0.18 4.65 5.63 -6.83 -0.04 4.61 16 4 N -0.43 -11.02 2.49 -117.94 -0.29 -11.32 16 5 C -0.30 -7.64 6.82 -14.94 -0.10 -7.74 16 6 H 0.09 2.38 5.75 -52.49 -0.30 2.08 16 7 C 0.04 1.09 5.40 -17.47 -0.09 1.00 16 8 N -0.89 -23.47 10.78 55.50 0.60 -22.87 16 9 Si 0.92 20.43 29.55 -169.99 -5.02 15.41 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.47 11.65 6.59 -10.99 -0.07 11.57 16 14 O -0.60 -15.89 14.97 5.55 0.08 -15.80 16 15 C 0.10 2.16 0.70 -91.20 -0.06 2.10 16 16 C -0.14 -2.48 8.52 37.16 0.32 -2.16 16 17 C -0.14 -2.45 6.15 -25.20 -0.16 -2.61 16 18 C -0.15 -2.33 7.17 -24.60 -0.18 -2.51 16 19 C 0.04 0.81 7.67 38.34 0.29 1.10 16 20 O -0.32 -6.89 8.02 -35.23 -0.28 -7.17 16 21 H 0.21 3.24 7.80 -54.08 -0.42 2.82 16 22 H 0.15 3.95 5.20 -51.93 -0.27 3.68 16 23 H 0.08 1.99 7.23 -51.93 -0.38 1.61 16 24 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.38 6.83 -51.93 -0.35 1.03 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.09 7.70 -51.93 -0.40 0.69 16 29 H 0.09 1.77 6.66 -51.93 -0.35 1.42 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 279.03 15.07 4.20 4.20 Total: -1.00 -29.62 279.03 -4.88 -34.50 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.14 Total: 6.57 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.03 Total: -3.52 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.31 Total: -34.18 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.20 Total: -22.98 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.62 -4.88 -34.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281029766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.286 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds