Wall clock time and date at job start Sun Mar 29 2020 22:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46943 * 120.03276 * 3 2 1 5 5 C 1.37096 * 119.99973 * 274.38772 * 4 3 2 6 6 H 1.07997 * 119.99599 * 133.55067 * 5 4 3 7 7 C 1.38946 * 120.00035 * 313.54776 * 5 4 3 8 8 N 1.31415 * 120.00171 * 3.32437 * 7 5 4 9 9 Si 1.86799 * 119.99991 * 183.32896 * 7 5 4 10 10 H 1.48500 * 109.47576 * 89.99603 * 9 7 5 11 11 H 1.48496 * 109.47227 * 210.00252 * 9 7 5 12 12 H 1.48507 * 109.46908 * 329.99799 * 9 7 5 13 13 C 1.34779 * 119.99950 * 94.38798 * 4 3 2 14 14 O 1.21293 * 119.99751 * 5.33492 * 13 4 3 15 15 C 1.50692 * 120.00015 * 185.33702 * 13 4 3 16 16 C 1.53005 * 109.87380 * 81.12124 * 15 13 4 17 17 C 1.54106 * 109.87945 * 202.12823 * 15 13 4 18 18 C 1.54813 * 104.30528 * 117.47672 * 17 15 13 19 19 C 1.55224 * 101.98744 * 339.26086 * 18 17 15 20 20 O 1.43741 * 110.00416 * 320.03270 * 15 13 4 21 21 H 4.40644 * 5.51438 * 180.02562 * 4 1 2 22 22 H 1.08995 * 109.47357 * 0.03718 * 3 2 1 23 23 H 1.08998 * 109.47098 * 240.02942 * 3 2 1 24 24 H 0.96997 * 120.00033 * 179.97438 * 8 7 5 25 25 H 1.08990 * 109.47199 * 181.00427 * 16 15 13 26 26 H 1.08997 * 109.46740 * 301.01068 * 16 15 13 27 27 H 1.08996 * 109.46720 * 61.00693 * 16 15 13 28 28 H 1.08997 * 110.48900 * 236.21875 * 17 15 13 29 29 H 1.09003 * 110.48803 * 358.73338 * 17 15 13 30 30 H 1.09002 * 110.90569 * 97.38814 * 18 17 15 31 31 H 1.08995 * 110.90732 * 220.98566 * 18 17 15 32 32 H 1.08995 * 110.51998 * 278.38503 * 19 18 17 33 33 H 1.09001 * 110.77591 * 155.50165 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6922 -1.1958 5 6 3.2771 0.0060 -2.3740 6 1 2.9052 0.4306 -3.2947 7 6 3.9007 -1.2356 -2.3835 8 7 4.2948 -1.7817 -1.2550 9 14 4.1791 -2.1286 -4.0004 10 1 5.4980 -1.7389 -4.5607 11 1 4.1543 -3.5949 -3.7668 12 1 3.1061 -1.7620 -4.9595 13 6 3.4422 2.0030 -1.1376 14 8 3.4085 2.5873 -0.0752 15 6 3.8286 2.7426 -2.3924 16 6 2.5720 3.1422 -3.1685 17 6 4.6426 3.9999 -2.0300 18 6 6.0260 3.7613 -2.6825 19 6 6.0344 2.2199 -2.8659 20 8 4.6671 1.9129 -3.2138 21 1 -1.0501 0.0001 0.0003 22 1 3.0098 -1.0268 -0.0007 23 1 3.0091 0.5142 0.8902 24 1 4.7298 -2.6486 -1.2617 25 1 2.8594 3.6606 -4.0831 26 1 2.0016 2.2484 -3.4213 27 1 1.9599 3.8020 -2.5538 28 1 4.1732 4.8913 -2.4461 29 1 4.7416 4.0916 -0.9483 30 1 6.0945 4.2678 -3.6453 31 1 6.8294 4.0805 -2.0187 32 1 6.3139 1.7260 -1.9354 33 1 6.7097 1.9300 -3.6709 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281029766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:43 Heat of formation + Delta-G solvation = -34.467547 kcal Electronic energy + Delta-G solvation = -17845.517196 eV Core-core repulsion = 15065.705608 eV Total energy + Delta-G solvation = -2779.811588 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45816 -39.10469 -37.01612 -34.17763 -33.26272 -33.08179 -32.20892 -28.47362 -26.91137 -26.58336 -23.71314 -22.29486 -20.79940 -19.67618 -18.57354 -17.70232 -17.13550 -16.72271 -16.45031 -16.15891 -15.60870 -15.07572 -14.45994 -14.35166 -14.15233 -13.81309 -13.31455 -13.26002 -13.08830 -12.95960 -12.66539 -12.47020 -12.23034 -12.07531 -11.79693 -11.57854 -11.43940 -11.15108 -11.09531 -10.81398 -9.99840 -9.47875 -8.16947 -6.06288 1.45210 1.47055 1.57949 1.74102 1.95825 2.02863 2.39800 2.95449 3.08011 3.23072 3.71181 3.81164 3.84076 4.16608 4.19951 4.34707 4.49315 4.67846 4.70211 4.82088 4.92293 4.97922 5.00301 5.08718 5.18527 5.20260 5.26123 5.30883 5.64701 6.02722 6.11836 6.48328 6.79133 7.17766 7.49928 7.93901 8.82423 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.013894 C = 0.009511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.755922 B = 2014.710034 C = 2943.371253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.216 4.216 3 C 0.186 3.814 4 N -0.438 5.438 5 C -0.300 4.300 6 H 0.093 0.907 7 C 0.000 4.000 8 N -0.914 5.914 9 Si 0.984 3.016 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.455 3.545 14 O -0.629 6.629 15 C 0.100 3.900 16 C -0.130 4.130 17 C -0.138 4.138 18 C -0.137 4.137 19 C 0.034 3.966 20 O -0.343 6.343 21 H 0.257 0.743 22 H 0.133 0.867 23 H 0.059 0.941 24 H 0.270 0.730 25 H 0.096 0.904 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.023 0.977 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.326 6.676 -5.824 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.217 4.217 3 C 0.064 3.936 4 N -0.155 5.155 5 C -0.428 4.428 6 H 0.111 0.889 7 C -0.200 4.200 8 N -0.554 5.554 9 Si 0.808 3.192 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.187 1.187 13 C 0.244 3.756 14 O -0.517 6.517 15 C 0.057 3.943 16 C -0.188 4.188 17 C -0.176 4.176 18 C -0.174 4.174 19 C -0.043 4.043 20 O -0.261 6.261 21 H 0.273 0.727 22 H 0.149 0.851 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.042 0.958 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.345 6.590 -5.418 8.538 hybrid contribution 0.103 -0.796 0.090 0.807 sum 0.448 5.794 -5.328 7.884 Atomic orbital electron populations 1.25614 0.96391 1.01512 0.99688 1.24432 0.95938 1.00288 1.01086 1.18737 0.83444 1.02511 0.88900 1.43565 1.54758 1.07270 1.09954 1.19526 1.35951 1.01699 0.85628 0.88929 1.26202 0.94592 0.98375 1.00795 1.69578 1.40392 1.18259 1.27187 0.85056 0.79181 0.76557 0.78374 1.19719 1.21108 1.18714 1.21836 0.78932 0.83715 0.91106 1.90468 1.59722 1.69054 1.32431 1.22028 0.94247 0.89845 0.88152 1.21815 0.94642 1.01587 1.00737 1.22942 0.95954 0.96607 1.02097 1.23155 0.96507 0.95195 1.02590 1.23669 0.85146 0.95354 1.00097 1.89146 1.15623 1.62297 1.59046 0.72727 0.85052 0.92320 0.92022 0.88485 0.93059 0.91128 0.87808 0.91577 0.87896 0.89201 0.95808 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.40 19.25 74.32 1.43 -6.97 16 2 C -0.22 -10.40 13.65 31.12 0.42 -9.97 16 3 C 0.19 9.93 5.63 84.57 0.48 10.40 16 4 N -0.44 -23.44 2.49 -645.44 -1.61 -25.04 16 5 C -0.30 -15.78 6.82 84.04 0.57 -15.20 16 6 H 0.09 4.79 5.75 -2.91 -0.02 4.77 16 7 C 0.00 -0.02 5.40 84.92 0.46 0.44 16 8 N -0.91 -49.95 10.78 21.66 0.23 -49.72 16 9 Si 0.98 41.75 29.55 68.60 2.03 43.78 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 C 0.45 23.15 6.59 87.65 0.58 23.73 16 14 O -0.63 -34.71 14.97 -3.07 -0.05 -34.75 16 15 C 0.10 4.06 0.70 -11.17 -0.01 4.06 16 16 C -0.13 -4.50 8.52 71.98 0.61 -3.89 16 17 C -0.14 -4.59 6.15 31.59 0.19 -4.39 16 18 C -0.14 -3.76 7.17 31.98 0.23 -3.53 16 19 C 0.03 1.20 7.67 72.75 0.56 1.76 16 20 O -0.34 -14.32 8.02 -148.98 -1.19 -15.51 16 21 H 0.26 6.88 7.80 -4.41 -0.03 6.84 16 22 H 0.13 7.39 5.20 -2.39 -0.01 7.38 16 23 H 0.06 3.22 7.23 -2.39 -0.02 3.20 16 24 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 25 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.05 1.95 6.83 -2.39 -0.02 1.93 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.10 2.76 7.70 -2.39 -0.02 2.75 16 29 H 0.07 2.54 6.66 -2.39 -0.02 2.53 16 30 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -66.66 279.03 6.05 -60.61 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 1.10 Total: 24.20 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.53 Total: -3.56 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -1.37 Total: -74.76 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -1.24 Total: -50.26 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -66.66 6.05 -60.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281029766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.143 kcal (2) G-P(sol) polarization free energy of solvation -66.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds