Wall clock time and date at job start Sun Mar 29 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47262 * 3.16299 * 3 2 1 5 5 C 1.37113 * 120.00045 * 87.66022 * 4 3 2 6 6 H 1.07995 * 119.99904 * 172.88557 * 5 4 3 7 7 C 1.38943 * 119.99465 * 352.87918 * 5 4 3 8 8 N 1.31417 * 120.00596 * 334.40896 * 7 5 4 9 9 Si 1.86805 * 119.99619 * 154.68155 * 7 5 4 10 10 H 1.48504 * 109.47236 * 265.06645 * 9 7 5 11 11 H 1.48500 * 109.46978 * 25.06397 * 9 7 5 12 12 H 1.48503 * 109.47051 * 145.06423 * 9 7 5 13 13 C 1.34778 * 120.00411 * 267.65645 * 4 3 2 14 14 O 1.21293 * 120.00300 * 180.02562 * 13 4 3 15 15 C 1.50697 * 119.99604 * 0.02562 * 13 4 3 16 16 C 1.52997 * 109.86996 * 275.69813 * 15 13 4 17 17 C 1.54098 * 109.87672 * 154.69410 * 15 13 4 18 18 C 1.54818 * 104.18747 * 242.60429 * 17 15 13 19 19 C 1.54993 * 102.08920 * 20.87995 * 18 17 15 20 20 O 1.43744 * 109.87827 * 36.70867 * 15 13 4 21 21 H 4.40633 * 5.51434 * 180.02562 * 4 1 2 22 22 H 1.09006 * 109.46954 * 243.16313 * 3 2 1 23 23 H 1.08998 * 109.46912 * 123.16624 * 3 2 1 24 24 H 0.97002 * 120.00103 * 180.27445 * 8 7 5 25 25 H 1.09003 * 109.47314 * 59.30445 * 16 15 13 26 26 H 1.09001 * 109.47146 * 179.30103 * 16 15 13 27 27 H 1.08998 * 109.47253 * 299.30018 * 16 15 13 28 28 H 1.09002 * 110.49046 * 1.28080 * 17 15 13 29 29 H 1.09003 * 110.49093 * 123.92868 * 17 15 13 30 30 H 1.08998 * 110.90791 * 139.07757 * 18 17 15 31 31 H 1.08998 * 110.90378 * 262.68611 * 18 17 15 32 32 H 1.09000 * 110.61675 * 81.48253 * 19 18 17 33 33 H 1.08995 * 110.61526 * 204.47392 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3781 -0.0762 5 6 3.3181 -1.9741 -1.2974 6 1 3.7854 -2.9457 -1.3594 7 6 2.9022 -1.3279 -2.4550 8 7 1.9293 -0.4461 -2.4020 9 14 3.7210 -1.7183 -4.0880 10 1 4.8011 -0.7329 -4.3483 11 1 4.2995 -3.0850 -4.0374 12 1 2.7133 -1.6473 -5.1765 13 6 3.4050 -2.0609 1.0540 14 8 3.8103 -3.2024 0.9909 15 6 3.2033 -1.4061 2.3962 16 6 4.4380 -0.5802 2.7627 17 6 2.9540 -2.4813 3.4716 18 6 1.5244 -2.1810 3.9843 19 6 0.9262 -1.3586 2.8146 20 8 2.0425 -0.5592 2.3573 21 1 -1.0497 -0.0005 -0.0002 22 1 3.0092 0.4648 0.9170 23 1 3.0091 0.5630 -0.8602 24 1 1.6363 0.0020 -3.2109 25 1 4.6049 0.1814 2.0009 26 1 4.2802 -0.0998 3.7283 27 1 5.3084 -1.2338 2.8200 28 1 3.0003 -3.4780 3.0326 29 1 3.6775 -2.3861 4.2813 30 1 0.9644 -3.1034 4.1376 31 1 1.5557 -1.5897 4.8994 32 1 0.5759 -2.0187 2.0211 33 1 0.1172 -0.7199 3.1689 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281029769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:46 Heat of formation + Delta-G solvation = -1.086643 kcal Electronic energy + Delta-G solvation = -17993.135307 eV Core-core repulsion = 15214.771224 eV Total energy + Delta-G solvation = -2778.364084 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94635 -37.30334 -35.21754 -32.05280 -31.72133 -31.32836 -30.74922 -26.30868 -25.57146 -24.93657 -22.23081 -21.08952 -18.71152 -17.77563 -16.56252 -16.10199 -15.89895 -15.37527 -14.69458 -14.08672 -13.84973 -13.25096 -13.04425 -12.87332 -12.33555 -12.23632 -12.00682 -11.65572 -11.59286 -11.20376 -10.93371 -10.88682 -10.52218 -10.41463 -10.31109 -10.21834 -9.71290 -9.16538 -9.04379 -8.59491 -8.10693 -7.87807 -6.31204 -3.77449 3.14754 3.26935 3.32209 3.72840 3.99170 4.23743 4.32256 4.43823 4.87300 5.01957 5.10918 5.12299 5.38067 5.54761 5.72026 5.76259 5.83697 5.91164 6.07138 6.11776 6.14320 6.28566 6.31945 6.47264 6.56658 6.69462 6.95870 7.26841 7.31209 7.58272 8.06180 8.46658 9.13060 9.15562 9.41796 9.95660 10.65819 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.010102 C = 0.008684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.266579 B = 2770.945895 C = 3223.381063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.067 4.067 3 C 0.237 3.763 4 N -0.425 5.425 5 C -0.320 4.320 6 H 0.107 0.893 7 C 0.034 3.966 8 N -0.851 5.851 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.285 1.285 13 C 0.431 3.569 14 O -0.589 6.589 15 C 0.090 3.910 16 C -0.137 4.137 17 C -0.134 4.134 18 C -0.154 4.154 19 C 0.051 3.949 20 O -0.352 6.352 21 H 0.192 0.808 22 H 0.076 0.924 23 H 0.097 0.903 24 H 0.268 0.732 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 2.722 8.868 9.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.068 4.068 3 C 0.114 3.886 4 N -0.141 5.141 5 C -0.447 4.447 6 H 0.124 0.876 7 C -0.171 4.171 8 N -0.488 5.488 9 Si 0.744 3.256 10 H -0.203 1.203 11 H -0.194 1.194 12 H -0.211 1.211 13 C 0.219 3.781 14 O -0.475 6.475 15 C 0.047 3.953 16 C -0.195 4.195 17 C -0.172 4.172 18 C -0.192 4.192 19 C -0.026 4.026 20 O -0.271 6.271 21 H 0.209 0.791 22 H 0.093 0.907 23 H 0.115 0.885 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.346 2.519 8.589 8.957 hybrid contribution -0.147 -0.263 -0.962 1.008 sum -0.493 2.256 7.627 7.969 Atomic orbital electron populations 1.23980 0.95110 1.02896 1.09197 1.22755 0.93847 0.97478 0.92752 1.18428 0.84998 0.84585 1.00603 1.43748 1.54089 1.11059 1.05220 1.19747 1.38416 1.05234 0.81352 0.87573 1.25257 0.95152 0.97048 0.99655 1.70185 1.21783 1.27478 1.29397 0.86056 0.79137 0.79176 0.81243 1.20337 1.19353 1.21133 1.20195 0.85833 0.86747 0.85357 1.90492 1.52359 1.18218 1.86457 1.22169 0.88098 0.90742 0.94268 1.21902 0.95748 1.00008 1.01823 1.22858 0.96330 1.00762 0.97225 1.23137 0.96549 1.00569 0.98941 1.23508 0.90283 0.94072 0.94726 1.89098 1.16231 1.34753 1.87012 0.79092 0.90653 0.88524 0.92098 0.91633 0.91785 0.91106 0.88889 0.90798 0.90732 0.91070 0.92120 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.42 18.77 29.55 0.55 -5.87 16 2 C -0.07 -1.57 8.92 -37.12 -0.33 -1.91 16 3 C 0.24 5.57 4.75 -6.83 -0.03 5.54 16 4 N -0.42 -11.05 2.59 -117.94 -0.31 -11.35 16 5 C -0.32 -8.99 9.43 -14.93 -0.14 -9.13 16 6 H 0.11 3.15 7.30 -52.49 -0.38 2.77 16 7 C 0.03 0.90 4.91 -17.47 -0.09 0.81 16 8 N -0.85 -22.59 9.05 55.50 0.50 -22.09 16 9 Si 0.92 20.68 29.62 -169.99 -5.04 15.64 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.43 10.66 6.54 -10.99 -0.07 10.59 16 14 O -0.59 -16.36 15.15 5.55 0.08 -16.27 16 15 C 0.09 1.75 0.70 -91.20 -0.06 1.68 16 16 C -0.14 -2.24 8.44 37.16 0.31 -1.92 16 17 C -0.13 -2.26 6.15 -25.20 -0.16 -2.41 16 18 C -0.15 -2.22 7.16 -24.72 -0.18 -2.40 16 19 C 0.05 0.86 6.64 38.21 0.25 1.11 16 20 O -0.35 -6.75 6.32 -35.23 -0.22 -6.97 16 21 H 0.19 3.50 7.80 -54.10 -0.42 3.08 16 22 H 0.08 1.60 4.40 -51.93 -0.23 1.37 16 23 H 0.10 2.39 6.39 -51.93 -0.33 2.06 16 24 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.06 1.08 6.86 -51.93 -0.36 0.72 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.79 6.73 -51.93 -0.35 1.44 16 29 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 270.79 15.07 4.08 4.08 Total: -1.00 -31.03 270.79 -4.97 -36.01 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.14 Total: 4.86 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 0.06 Total: -3.90 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.20 Total: -33.44 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.14 Total: -23.25 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.04 Total: 15.64 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.03 -4.97 -36.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281029769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.918 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds