Wall clock time and date at job start Sun Mar 29 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47262 * 3.16299 * 3 2 1 5 5 C 1.37113 * 120.00045 * 87.66022 * 4 3 2 6 6 H 1.07995 * 119.99904 * 172.88557 * 5 4 3 7 7 C 1.38943 * 119.99465 * 352.87918 * 5 4 3 8 8 N 1.31417 * 120.00596 * 334.40896 * 7 5 4 9 9 Si 1.86805 * 119.99619 * 154.68155 * 7 5 4 10 10 H 1.48504 * 109.47236 * 265.06645 * 9 7 5 11 11 H 1.48500 * 109.46978 * 25.06397 * 9 7 5 12 12 H 1.48503 * 109.47051 * 145.06423 * 9 7 5 13 13 C 1.34778 * 120.00411 * 267.65645 * 4 3 2 14 14 O 1.21293 * 120.00300 * 180.02562 * 13 4 3 15 15 C 1.50697 * 119.99604 * 0.02562 * 13 4 3 16 16 C 1.52997 * 109.86996 * 275.69813 * 15 13 4 17 17 C 1.54098 * 109.87672 * 154.69410 * 15 13 4 18 18 C 1.54818 * 104.18747 * 242.60429 * 17 15 13 19 19 C 1.54993 * 102.08920 * 20.87995 * 18 17 15 20 20 O 1.43744 * 109.87827 * 36.70867 * 15 13 4 21 21 H 4.40633 * 5.51434 * 180.02562 * 4 1 2 22 22 H 1.09006 * 109.46954 * 243.16313 * 3 2 1 23 23 H 1.08998 * 109.46912 * 123.16624 * 3 2 1 24 24 H 0.97002 * 120.00103 * 180.27445 * 8 7 5 25 25 H 1.09003 * 109.47314 * 59.30445 * 16 15 13 26 26 H 1.09001 * 109.47146 * 179.30103 * 16 15 13 27 27 H 1.08998 * 109.47253 * 299.30018 * 16 15 13 28 28 H 1.09002 * 110.49046 * 1.28080 * 17 15 13 29 29 H 1.09003 * 110.49093 * 123.92868 * 17 15 13 30 30 H 1.08998 * 110.90791 * 139.07757 * 18 17 15 31 31 H 1.08998 * 110.90378 * 262.68611 * 18 17 15 32 32 H 1.09000 * 110.61675 * 81.48253 * 19 18 17 33 33 H 1.08995 * 110.61526 * 204.47392 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3781 -0.0762 5 6 3.3181 -1.9741 -1.2974 6 1 3.7854 -2.9457 -1.3594 7 6 2.9022 -1.3279 -2.4550 8 7 1.9293 -0.4461 -2.4020 9 14 3.7210 -1.7183 -4.0880 10 1 4.8011 -0.7329 -4.3483 11 1 4.2995 -3.0850 -4.0374 12 1 2.7133 -1.6473 -5.1765 13 6 3.4050 -2.0609 1.0540 14 8 3.8103 -3.2024 0.9909 15 6 3.2033 -1.4061 2.3962 16 6 4.4380 -0.5802 2.7627 17 6 2.9540 -2.4813 3.4716 18 6 1.5244 -2.1810 3.9843 19 6 0.9262 -1.3586 2.8146 20 8 2.0425 -0.5592 2.3573 21 1 -1.0497 -0.0005 -0.0002 22 1 3.0092 0.4648 0.9170 23 1 3.0091 0.5630 -0.8602 24 1 1.6363 0.0020 -3.2109 25 1 4.6049 0.1814 2.0009 26 1 4.2802 -0.0998 3.7283 27 1 5.3084 -1.2338 2.8200 28 1 3.0003 -3.4780 3.0326 29 1 3.6775 -2.3861 4.2813 30 1 0.9644 -3.1034 4.1376 31 1 1.5557 -1.5897 4.8994 32 1 0.5759 -2.0187 2.0211 33 1 0.1172 -0.7199 3.1689 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281029769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:46 Heat of formation + Delta-G solvation = -20.688235 kcal Electronic energy + Delta-G solvation = -17993.985296 eV Core-core repulsion = 15214.771224 eV Total energy + Delta-G solvation = -2779.214072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56704 -39.03239 -37.18383 -33.96400 -33.20071 -32.99909 -32.30741 -28.21318 -27.00060 -26.75337 -23.84351 -22.46873 -20.40175 -19.68351 -18.39196 -17.92299 -17.39225 -16.86081 -16.50580 -15.91104 -15.63235 -14.95328 -14.53627 -14.32307 -14.04074 -13.96559 -13.52121 -13.29461 -13.13733 -12.85299 -12.53303 -12.37348 -12.26952 -12.14986 -11.82421 -11.63129 -11.28256 -11.11726 -10.85236 -10.42736 -9.94528 -9.88687 -8.33578 -5.89223 1.32373 1.39979 1.51921 1.86723 2.17240 2.39031 2.62031 2.91857 3.00624 3.20371 3.71146 3.78838 4.00773 4.11943 4.15887 4.23944 4.43998 4.64817 4.79221 4.80455 4.90781 4.95238 4.96768 5.03462 5.12318 5.19908 5.27266 5.45470 5.55556 5.83467 6.04704 6.44695 7.12193 7.34478 7.44266 7.98768 8.61118 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.010102 C = 0.008684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.266579 B = 2770.945895 C = 3223.381063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.105 4.105 3 C 0.244 3.756 4 N -0.438 5.438 5 C -0.363 4.363 6 H 0.075 0.925 7 C 0.007 3.993 8 N -0.861 5.861 9 Si 0.982 3.018 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.418 3.582 14 O -0.633 6.633 15 C 0.092 3.908 16 C -0.134 4.134 17 C -0.134 4.134 18 C -0.139 4.139 19 C 0.043 3.957 20 O -0.359 6.359 21 H 0.225 0.775 22 H 0.097 0.903 23 H 0.078 0.922 24 H 0.273 0.727 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.024 0.976 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 3.958 10.115 10.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.107 4.107 3 C 0.122 3.878 4 N -0.154 5.154 5 C -0.490 4.490 6 H 0.093 0.907 7 C -0.198 4.198 8 N -0.497 5.497 9 Si 0.806 3.194 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.201 1.201 13 C 0.208 3.792 14 O -0.522 6.522 15 C 0.049 3.951 16 C -0.191 4.191 17 C -0.172 4.172 18 C -0.177 4.177 19 C -0.033 4.033 20 O -0.278 6.278 21 H 0.241 0.759 22 H 0.115 0.885 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.042 0.958 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.985 3.788 9.843 10.593 hybrid contribution -0.031 -0.668 -1.360 1.516 sum -1.017 3.119 8.483 9.095 Atomic orbital electron populations 1.24781 0.96012 1.01178 1.07584 1.22978 0.94392 0.99048 0.94258 1.18362 0.85448 0.83198 1.00772 1.43952 1.54369 1.11993 1.05092 1.19617 1.40676 1.05254 0.83420 0.90728 1.25952 0.94995 0.96662 1.02182 1.70264 1.21619 1.27382 1.30401 0.85113 0.78464 0.78654 0.77211 1.18919 1.20272 1.20085 1.21356 0.84219 0.86464 0.87196 1.90444 1.53921 1.20254 1.87559 1.22192 0.89658 0.91884 0.91396 1.21915 0.94182 0.99527 1.03462 1.22881 0.99143 0.98043 0.97168 1.23130 0.94352 1.01263 0.98914 1.23645 0.90591 0.94365 0.94681 1.89073 1.16630 1.34829 1.87300 0.75875 0.88520 0.90395 0.91644 0.92351 0.88051 0.90885 0.92172 0.87571 0.89443 0.87563 0.95798 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.77 18.77 74.32 1.39 -10.38 16 2 C -0.11 -4.94 8.92 31.13 0.28 -4.66 16 3 C 0.24 11.66 4.75 84.58 0.40 12.06 16 4 N -0.44 -23.55 2.59 -645.42 -1.67 -25.22 16 5 C -0.36 -21.24 9.43 84.04 0.79 -20.44 16 6 H 0.07 4.73 7.30 -2.91 -0.02 4.71 16 7 C 0.01 0.35 4.91 84.92 0.42 0.77 16 8 N -0.86 -45.85 9.05 21.66 0.20 -45.65 16 9 Si 0.98 42.97 29.62 68.60 2.03 45.00 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 13 C 0.42 21.35 6.54 87.66 0.57 21.92 16 14 O -0.63 -36.92 15.15 -3.07 -0.05 -36.97 16 15 C 0.09 3.47 0.70 -11.17 -0.01 3.47 16 16 C -0.13 -4.09 8.44 71.98 0.61 -3.48 16 17 C -0.13 -4.32 6.15 31.59 0.19 -4.12 16 18 C -0.14 -3.58 7.16 31.90 0.23 -3.35 16 19 C 0.04 1.39 6.64 72.66 0.48 1.88 16 20 O -0.36 -13.22 6.32 -148.98 -0.94 -14.16 16 21 H 0.22 7.59 7.80 -4.43 -0.03 7.56 16 22 H 0.10 4.09 4.40 -2.38 -0.01 4.08 16 23 H 0.08 3.94 6.39 -2.39 -0.02 3.92 16 24 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 25 H 0.06 1.85 6.86 -2.39 -0.02 1.83 16 26 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 2.34 6.73 -2.39 -0.02 2.32 16 29 H 0.11 2.69 7.70 -2.39 -0.02 2.67 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -69.81 270.79 6.03 -63.77 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 1.10 Total: 19.58 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.36 Total: -6.35 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -1.47 Total: -70.87 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.99 Total: -51.13 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -69.81 6.03 -63.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281029769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.086 kcal (2) G-P(sol) polarization free energy of solvation -69.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds