Wall clock time and date at job start Sun Mar 29 2020 22:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47461 * 317.47862 * 3 2 1 5 5 C 1.37093 * 120.00233 * 270.00677 * 4 3 2 6 6 H 1.07994 * 120.00265 * 128.63770 * 5 4 3 7 7 C 1.38953 * 119.99898 * 308.63543 * 5 4 3 8 8 N 1.31404 * 120.00145 * 171.01682 * 7 5 4 9 9 Si 1.86805 * 119.99802 * 351.01722 * 7 5 4 10 10 H 1.48500 * 109.46855 * 93.76289 * 9 7 5 11 11 H 1.48499 * 109.47165 * 213.76414 * 9 7 5 12 12 H 1.48502 * 109.47311 * 333.76771 * 9 7 5 13 13 C 1.34779 * 119.99600 * 89.99736 * 4 3 2 14 14 O 1.21285 * 120.00395 * 355.13564 * 13 4 3 15 15 C 1.50702 * 119.99645 * 175.13408 * 13 4 3 16 16 O 1.42893 * 110.02109 * 39.71128 * 15 13 4 17 17 C 1.54274 * 110.03037 * 278.27298 * 15 13 4 18 18 C 1.54891 * 104.19523 * 217.10775 * 17 15 13 19 19 C 1.54890 * 102.74879 * 37.94098 * 18 17 15 20 20 C 1.53879 * 110.03307 * 161.10825 * 15 13 4 21 21 H 4.40644 * 5.51208 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.47586 * 77.47738 * 3 2 1 23 23 H 1.09003 * 109.47335 * 197.48062 * 3 2 1 24 24 H 0.97009 * 120.00134 * 179.97438 * 8 7 5 25 25 H 0.96702 * 114.00118 * 276.66606 * 16 15 13 26 26 H 1.08997 * 110.48544 * 335.78377 * 17 15 13 27 27 H 1.08997 * 110.48620 * 98.42690 * 17 15 13 28 28 H 1.08999 * 110.75493 * 279.62643 * 18 17 15 29 29 H 1.08996 * 110.75793 * 156.25452 * 18 17 15 30 30 H 1.09000 * 110.48704 * 203.38032 * 19 18 17 31 31 H 1.08992 * 110.48778 * 80.73861 * 19 18 17 32 32 H 1.09000 * 110.02929 * 238.56650 * 20 15 13 33 33 H 1.09004 * 110.02948 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0171 0.9335 5 6 3.3631 -0.6910 2.2454 6 1 2.9333 -1.2910 3.0337 7 6 4.1476 0.4117 2.5608 8 7 4.2236 0.8300 3.8041 9 14 5.0943 1.2994 1.2171 10 1 4.2834 2.4343 0.7075 11 1 6.3732 1.8136 1.7697 12 1 5.3788 0.3561 0.1061 13 6 3.3600 -2.2742 0.5026 14 8 3.0750 -2.5857 -0.6344 15 6 3.9659 -3.2926 1.4336 16 8 3.4184 -3.1435 2.7450 17 6 5.4986 -3.1227 1.4773 18 6 6.0388 -4.5712 1.5730 19 6 5.0741 -5.3574 0.6509 20 6 3.6960 -4.7135 0.9081 21 1 -1.0498 -0.0002 0.0000 22 1 3.0095 -0.2220 -1.0032 23 1 3.0089 0.9810 0.3087 24 1 4.7716 1.5996 4.0244 25 1 3.8489 -2.4591 3.2755 26 1 5.8553 -2.6419 0.5664 27 1 5.7937 -2.5467 2.3544 28 1 5.9793 -4.9387 2.5974 29 1 7.0614 -4.6275 1.2000 30 1 5.0594 -6.4123 0.9248 31 1 5.3622 -5.2375 -0.3935 32 1 3.1481 -5.2895 1.6538 33 1 3.1264 -4.6664 -0.0201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281136375.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:04 Heat of formation + Delta-G solvation = -18.268660 kcal Electronic energy + Delta-G solvation = -17740.404609 eV Core-core repulsion = 14961.295457 eV Total energy + Delta-G solvation = -2779.109152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78118 -37.10934 -35.44863 -34.02458 -32.64771 -31.61204 -28.33491 -27.92725 -26.55733 -24.77137 -20.92749 -20.53044 -18.78544 -18.63048 -17.40605 -16.16654 -15.72207 -15.41962 -14.77335 -14.49167 -14.20114 -13.49247 -13.11648 -13.03774 -12.66254 -12.32788 -12.00901 -11.81215 -11.23966 -11.09589 -10.94091 -10.73820 -10.66896 -10.40516 -10.20613 -10.06659 -9.91731 -9.76680 -9.43006 -9.22147 -8.33740 -7.78260 -6.55392 -4.39235 2.94546 3.10241 3.15891 3.26346 3.52700 3.58719 4.00067 4.50723 4.76404 4.93815 5.02235 5.14631 5.20868 5.48876 5.76980 5.88059 5.93423 6.00271 6.04263 6.13790 6.18534 6.19770 6.30875 6.48130 6.54665 6.56809 6.69012 6.82312 7.28629 7.97405 8.18567 8.28235 8.57255 8.83035 9.16823 9.54637 10.49582 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.012189 C = 0.009547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.598606 B = 2296.692572 C = 2932.084533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.162 4.162 3 C 0.197 3.803 4 N -0.461 5.461 5 C -0.358 4.358 6 H 0.124 0.876 7 C 0.071 3.929 8 N -0.859 5.859 9 Si 0.870 3.130 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.258 1.258 13 C 0.482 3.518 14 O -0.586 6.586 15 C 0.143 3.857 16 O -0.559 6.559 17 C -0.137 4.137 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.113 4.113 21 H 0.212 0.788 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.278 0.722 25 H 0.397 0.603 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -4.840 -3.229 6.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.163 4.163 3 C 0.075 3.925 4 N -0.182 5.182 5 C -0.485 4.485 6 H 0.141 0.859 7 C -0.137 4.137 8 N -0.494 5.494 9 Si 0.696 3.304 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.182 1.182 13 C 0.271 3.729 14 O -0.470 6.470 15 C 0.099 3.901 16 O -0.374 6.374 17 C -0.176 4.176 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.151 4.151 21 H 0.228 0.772 22 H 0.107 0.893 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.254 0.746 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.359 -5.287 -3.815 6.933 hybrid contribution 0.538 1.392 -0.262 1.516 sum 2.898 -3.894 -4.077 6.339 Atomic orbital electron populations 1.24638 0.95630 1.02069 1.02585 1.23723 0.94909 0.99046 0.98637 1.18734 0.83977 0.93967 0.95784 1.43688 1.57401 1.07546 1.09545 1.19597 1.31919 1.15521 0.81473 0.85906 1.25616 0.95479 0.96536 0.96114 1.69656 1.37411 1.24522 1.17807 0.86951 0.80041 0.80573 0.82797 1.19736 1.20898 1.18199 1.21407 0.79395 0.84263 0.87811 1.90523 1.55641 1.79982 1.20827 1.21436 0.92168 0.93038 0.83455 1.86464 1.63411 1.63146 1.24369 1.22943 0.94227 0.97218 1.03162 1.22493 0.98331 0.95163 0.99932 1.22336 0.94976 0.98767 0.99682 1.22187 0.97833 0.92954 1.02088 0.77154 0.89265 0.89711 0.91201 0.74566 0.91196 0.89860 0.91227 0.91814 0.91815 0.91652 0.90826 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.51 19.25 29.55 0.57 -3.95 16 2 C -0.16 -3.62 13.67 -37.13 -0.51 -4.13 16 3 C 0.20 4.52 4.53 -6.83 -0.03 4.49 16 4 N -0.46 -11.15 1.93 -117.94 -0.23 -11.37 16 5 C -0.36 -8.90 7.57 -14.93 -0.11 -9.01 16 6 H 0.12 3.22 5.27 -52.49 -0.28 2.94 16 7 C 0.07 1.77 5.43 -17.47 -0.09 1.67 16 8 N -0.86 -22.24 13.96 55.50 0.77 -21.46 16 9 Si 0.87 19.29 24.92 -169.99 -4.24 15.05 16 10 H -0.27 -5.90 6.87 56.52 0.39 -5.51 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.26 -5.73 7.07 56.52 0.40 -5.33 16 13 C 0.48 11.48 6.53 -10.98 -0.07 11.41 16 14 O -0.59 -14.86 15.04 5.55 0.08 -14.78 16 15 C 0.14 2.93 0.97 -90.65 -0.09 2.85 16 16 O -0.56 -11.95 11.43 -35.23 -0.40 -12.36 16 17 C -0.14 -2.47 5.98 -25.07 -0.15 -2.62 16 18 C -0.12 -1.77 6.91 -24.74 -0.17 -1.94 16 19 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 20 C -0.11 -2.05 6.16 -25.61 -0.16 -2.20 16 21 H 0.21 3.11 7.80 -54.10 -0.42 2.69 16 22 H 0.09 1.97 7.49 -51.93 -0.39 1.58 16 23 H 0.09 1.91 4.16 -51.93 -0.22 1.69 16 24 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 25 H 0.40 8.42 5.54 45.56 0.25 8.67 16 26 H 0.07 1.30 7.85 -51.93 -0.41 0.89 16 27 H 0.08 1.50 7.66 -51.93 -0.40 1.10 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 33 H 0.09 1.71 6.58 -51.93 -0.34 1.37 16 LS Contribution 273.33 15.07 4.12 4.12 Total: -1.00 -28.44 273.33 -4.33 -32.77 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -3.45 Total: 13.40 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.99 Total: -5.37 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.55 Total: -32.84 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.32 Total: -27.13 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.24 Total: 15.05 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.44 -4.33 -32.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281136375.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.500 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds