Wall clock time and date at job start Sun Mar 29 2020 22:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47461 * 317.47862 * 3 2 1 5 5 C 1.37093 * 120.00233 * 270.00677 * 4 3 2 6 6 H 1.07994 * 120.00265 * 128.63770 * 5 4 3 7 7 C 1.38953 * 119.99898 * 308.63543 * 5 4 3 8 8 N 1.31404 * 120.00145 * 171.01682 * 7 5 4 9 9 Si 1.86805 * 119.99802 * 351.01722 * 7 5 4 10 10 H 1.48500 * 109.46855 * 93.76289 * 9 7 5 11 11 H 1.48499 * 109.47165 * 213.76414 * 9 7 5 12 12 H 1.48502 * 109.47311 * 333.76771 * 9 7 5 13 13 C 1.34779 * 119.99600 * 89.99736 * 4 3 2 14 14 O 1.21285 * 120.00395 * 355.13564 * 13 4 3 15 15 C 1.50702 * 119.99645 * 175.13408 * 13 4 3 16 16 O 1.42893 * 110.02109 * 39.71128 * 15 13 4 17 17 C 1.54274 * 110.03037 * 278.27298 * 15 13 4 18 18 C 1.54891 * 104.19523 * 217.10775 * 17 15 13 19 19 C 1.54890 * 102.74879 * 37.94098 * 18 17 15 20 20 C 1.53879 * 110.03307 * 161.10825 * 15 13 4 21 21 H 4.40644 * 5.51208 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.47586 * 77.47738 * 3 2 1 23 23 H 1.09003 * 109.47335 * 197.48062 * 3 2 1 24 24 H 0.97009 * 120.00134 * 179.97438 * 8 7 5 25 25 H 0.96702 * 114.00118 * 276.66606 * 16 15 13 26 26 H 1.08997 * 110.48544 * 335.78377 * 17 15 13 27 27 H 1.08997 * 110.48620 * 98.42690 * 17 15 13 28 28 H 1.08999 * 110.75493 * 279.62643 * 18 17 15 29 29 H 1.08996 * 110.75793 * 156.25452 * 18 17 15 30 30 H 1.09000 * 110.48704 * 203.38032 * 19 18 17 31 31 H 1.08992 * 110.48778 * 80.73861 * 19 18 17 32 32 H 1.09000 * 110.02929 * 238.56650 * 20 15 13 33 33 H 1.09004 * 110.02948 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0171 0.9335 5 6 3.3631 -0.6910 2.2454 6 1 2.9333 -1.2910 3.0337 7 6 4.1476 0.4117 2.5608 8 7 4.2236 0.8300 3.8041 9 14 5.0943 1.2994 1.2171 10 1 4.2834 2.4343 0.7075 11 1 6.3732 1.8136 1.7697 12 1 5.3788 0.3561 0.1061 13 6 3.3600 -2.2742 0.5026 14 8 3.0750 -2.5857 -0.6344 15 6 3.9659 -3.2926 1.4336 16 8 3.4184 -3.1435 2.7450 17 6 5.4986 -3.1227 1.4773 18 6 6.0388 -4.5712 1.5730 19 6 5.0741 -5.3574 0.6509 20 6 3.6960 -4.7135 0.9081 21 1 -1.0498 -0.0002 0.0000 22 1 3.0095 -0.2220 -1.0032 23 1 3.0089 0.9810 0.3087 24 1 4.7716 1.5996 4.0244 25 1 3.8489 -2.4591 3.2755 26 1 5.8553 -2.6419 0.5664 27 1 5.7937 -2.5467 2.3544 28 1 5.9793 -4.9387 2.5974 29 1 7.0614 -4.6275 1.2000 30 1 5.0594 -6.4123 0.9248 31 1 5.3622 -5.2375 -0.3935 32 1 3.1481 -5.2895 1.6538 33 1 3.1264 -4.6664 -0.0201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281136375.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:03 Heat of formation + Delta-G solvation = -37.017342 kcal Electronic energy + Delta-G solvation = -17741.217613 eV Core-core repulsion = 14961.295457 eV Total energy + Delta-G solvation = -2779.922156 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.50274 -38.71665 -37.31092 -35.56338 -34.46863 -33.41025 -29.70949 -29.51289 -28.24665 -26.61724 -22.56439 -21.82775 -20.56419 -20.33964 -19.08819 -17.89987 -17.38771 -17.07397 -16.39064 -16.14568 -15.91599 -15.18737 -14.90326 -14.58179 -14.25325 -14.01652 -13.73672 -13.37034 -13.04069 -12.77786 -12.45969 -12.20450 -11.98383 -11.97269 -11.74054 -11.62868 -11.47128 -11.38202 -11.19275 -11.01683 -10.14904 -9.67802 -8.48681 -6.35916 1.16407 1.28635 1.37722 1.55634 1.79575 1.87645 2.15071 2.77902 2.86788 3.45606 3.58157 3.66534 3.77297 3.98392 4.22170 4.31042 4.44904 4.51718 4.57198 4.67894 4.79641 4.94920 5.02383 5.06767 5.14880 5.20254 5.34381 5.43840 5.47870 6.09094 6.18646 6.65979 6.87192 6.90715 7.26964 7.66212 8.58421 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.012189 C = 0.009547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.598606 B = 2296.692572 C = 2932.084533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.231 4.231 3 C 0.193 3.807 4 N -0.468 5.468 5 C -0.355 4.355 6 H 0.105 0.895 7 C 0.045 3.955 8 N -0.888 5.888 9 Si 0.913 3.087 10 H -0.264 1.264 11 H -0.275 1.275 12 H -0.262 1.262 13 C 0.469 3.531 14 O -0.608 6.608 15 C 0.134 3.866 16 O -0.565 6.565 17 C -0.137 4.137 18 C -0.112 4.112 19 C -0.112 4.112 20 C -0.113 4.113 21 H 0.258 0.742 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.282 0.718 25 H 0.394 0.606 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -5.512 -3.573 7.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.232 4.232 3 C 0.072 3.928 4 N -0.189 5.189 5 C -0.482 4.482 6 H 0.122 0.878 7 C -0.162 4.162 8 N -0.524 5.524 9 Si 0.738 3.262 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.186 1.186 13 C 0.260 3.740 14 O -0.494 6.494 15 C 0.090 3.910 16 O -0.379 6.379 17 C -0.175 4.175 18 C -0.149 4.149 19 C -0.150 4.150 20 C -0.151 4.151 21 H 0.274 0.726 22 H 0.106 0.894 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.251 0.749 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.677 -5.956 -4.156 7.741 hybrid contribution 0.297 1.604 -0.165 1.639 sum 2.974 -4.352 -4.321 6.816 Atomic orbital electron populations 1.25713 0.96569 0.98912 0.99429 1.23963 0.95665 1.01999 1.01592 1.18703 0.85144 0.93563 0.95427 1.43822 1.57556 1.08061 1.09423 1.19417 1.31858 1.15407 0.81494 0.87768 1.25992 0.95859 0.96922 0.97412 1.69710 1.38321 1.25301 1.19060 0.86268 0.79382 0.79802 0.80758 1.18987 1.20057 1.18642 1.22132 0.79018 0.84701 0.88198 1.90489 1.56587 1.80384 1.21916 1.21721 0.93607 0.93373 0.82270 1.86452 1.63897 1.62825 1.24774 1.22935 0.92393 0.99829 1.02376 1.22496 0.99460 0.92149 1.00783 1.22340 0.92435 1.00194 1.00008 1.22218 1.00050 0.91810 1.01014 0.72616 0.89361 0.89817 0.90746 0.74874 0.92234 0.90336 0.90121 0.89184 0.88760 0.91402 0.90340 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.97 19.25 74.32 1.43 -5.53 16 2 C -0.23 -10.25 13.67 31.12 0.43 -9.83 16 3 C 0.19 8.95 4.53 84.57 0.38 9.34 16 4 N -0.47 -22.93 1.93 -645.42 -1.25 -24.18 16 5 C -0.35 -17.90 7.57 84.04 0.64 -17.26 16 6 H 0.11 5.61 5.27 -2.91 -0.02 5.60 16 7 C 0.04 2.22 5.43 84.93 0.46 2.68 16 8 N -0.89 -46.16 13.96 21.66 0.30 -45.85 16 9 Si 0.91 39.55 24.92 68.60 1.71 41.26 16 10 H -0.26 -11.08 6.87 99.48 0.68 -10.40 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.26 -11.46 7.07 99.48 0.70 -10.75 16 13 C 0.47 22.64 6.53 87.66 0.57 23.22 16 14 O -0.61 -31.32 15.04 -3.05 -0.05 -31.37 16 15 C 0.13 5.49 0.97 -10.81 -0.01 5.48 16 16 O -0.57 -24.41 11.43 -148.98 -1.70 -26.11 16 17 C -0.14 -4.82 5.98 31.67 0.19 -4.63 16 18 C -0.11 -2.93 6.91 31.89 0.22 -2.71 16 19 C -0.11 -3.01 6.83 31.67 0.22 -2.79 16 20 C -0.11 -4.00 6.16 31.32 0.19 -3.80 16 21 H 0.26 6.50 7.80 -4.43 -0.03 6.46 16 22 H 0.09 3.98 7.49 -2.39 -0.02 3.96 16 23 H 0.08 3.79 4.16 -2.39 -0.01 3.78 16 24 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16 25 H 0.39 17.15 5.54 -74.06 -0.41 16.74 16 26 H 0.06 2.19 7.85 -2.39 -0.02 2.17 16 27 H 0.08 2.79 7.66 -2.39 -0.02 2.78 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.65 7.95 -2.39 -0.02 2.63 16 33 H 0.07 2.65 6.58 -2.38 -0.02 2.64 16 Total: -1.00 -61.14 273.33 4.42 -56.72 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.69 Total: 35.38 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 4.72 Total: -5.84 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -0.94 Total: -70.03 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -1.75 Total: -57.48 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.71 Total: 41.26 kcal Total: -61.14 4.42 -56.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281136375.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.701 kcal (2) G-P(sol) polarization free energy of solvation -61.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds