Wall clock time and date at job start Sun Mar 29 2020 22:40:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47193 * 179.97438 * 2 1
4 4 N 1.46503 * 109.47461 * 317.47862 * 3 2 1
5 5 C 1.37093 * 120.00233 * 270.00677 * 4 3 2
6 6 H 1.07994 * 120.00265 * 128.63770 * 5 4 3
7 7 C 1.38953 * 119.99898 * 308.63543 * 5 4 3
8 8 N 1.31404 * 120.00145 * 171.01682 * 7 5 4
9 9 Si 1.86805 * 119.99802 * 351.01722 * 7 5 4
10 10 H 1.48500 * 109.46855 * 93.76289 * 9 7 5
11 11 H 1.48499 * 109.47165 * 213.76414 * 9 7 5
12 12 H 1.48502 * 109.47311 * 333.76771 * 9 7 5
13 13 C 1.34779 * 119.99600 * 89.99736 * 4 3 2
14 14 O 1.21285 * 120.00395 * 355.13564 * 13 4 3
15 15 C 1.50702 * 119.99645 * 175.13408 * 13 4 3
16 16 O 1.42893 * 110.02109 * 39.71128 * 15 13 4
17 17 C 1.54274 * 110.03037 * 278.27298 * 15 13 4
18 18 C 1.54891 * 104.19523 * 217.10775 * 17 15 13
19 19 C 1.54890 * 102.74879 * 37.94098 * 18 17 15
20 20 C 1.53879 * 110.03307 * 161.10825 * 15 13 4
21 21 H 4.40644 * 5.51208 * 180.02562 * 4 1 2
22 22 H 1.09000 * 109.47586 * 77.47738 * 3 2 1
23 23 H 1.09003 * 109.47335 * 197.48062 * 3 2 1
24 24 H 0.97009 * 120.00134 * 179.97438 * 8 7 5
25 25 H 0.96702 * 114.00118 * 276.66606 * 16 15 13
26 26 H 1.08997 * 110.48544 * 335.78377 * 17 15 13
27 27 H 1.08997 * 110.48620 * 98.42690 * 17 15 13
28 28 H 1.08999 * 110.75493 * 279.62643 * 18 17 15
29 29 H 1.08996 * 110.75793 * 156.25452 * 18 17 15
30 30 H 1.09000 * 110.48704 * 203.38032 * 19 18 17
31 31 H 1.08992 * 110.48778 * 80.73861 * 19 18 17
32 32 H 1.09000 * 110.02929 * 238.56650 * 20 15 13
33 33 H 1.09004 * 110.02948 * 359.97438 * 20 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1348 -1.0171 0.9335
5 6 3.3631 -0.6910 2.2454
6 1 2.9333 -1.2910 3.0337
7 6 4.1476 0.4117 2.5608
8 7 4.2236 0.8300 3.8041
9 14 5.0943 1.2994 1.2171
10 1 4.2834 2.4343 0.7075
11 1 6.3732 1.8136 1.7697
12 1 5.3788 0.3561 0.1061
13 6 3.3600 -2.2742 0.5026
14 8 3.0750 -2.5857 -0.6344
15 6 3.9659 -3.2926 1.4336
16 8 3.4184 -3.1435 2.7450
17 6 5.4986 -3.1227 1.4773
18 6 6.0388 -4.5712 1.5730
19 6 5.0741 -5.3574 0.6509
20 6 3.6960 -4.7135 0.9081
21 1 -1.0498 -0.0002 0.0000
22 1 3.0095 -0.2220 -1.0032
23 1 3.0089 0.9810 0.3087
24 1 4.7716 1.5996 4.0244
25 1 3.8489 -2.4591 3.2755
26 1 5.8553 -2.6419 0.5664
27 1 5.7937 -2.5467 2.3544
28 1 5.9793 -4.9387 2.5974
29 1 7.0614 -4.6275 1.2000
30 1 5.0594 -6.4123 0.9248
31 1 5.3622 -5.2375 -0.3935
32 1 3.1481 -5.2895 1.6538
33 1 3.1264 -4.6664 -0.0201
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000281136375.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:40:03
Heat of formation + Delta-G solvation = -37.017342 kcal
Electronic energy + Delta-G solvation = -17741.217613 eV
Core-core repulsion = 14961.295457 eV
Total energy + Delta-G solvation = -2779.922156 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 237.115 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.50274 -38.71665 -37.31092 -35.56338 -34.46863 -33.41025 -29.70949 -29.51289
-28.24665 -26.61724 -22.56439 -21.82775 -20.56419 -20.33964 -19.08819 -17.89987
-17.38771 -17.07397 -16.39064 -16.14568 -15.91599 -15.18737 -14.90326 -14.58179
-14.25325 -14.01652 -13.73672 -13.37034 -13.04069 -12.77786 -12.45969 -12.20450
-11.98383 -11.97269 -11.74054 -11.62868 -11.47128 -11.38202 -11.19275 -11.01683
-10.14904 -9.67802 -8.48681 -6.35916 1.16407 1.28635 1.37722 1.55634
1.79575 1.87645 2.15071 2.77902 2.86788 3.45606 3.58157 3.66534
3.77297 3.98392 4.22170 4.31042 4.44904 4.51718 4.57198 4.67894
4.79641 4.94920 5.02383 5.06767 5.14880 5.20254 5.34381 5.43840
5.47870 6.09094 6.18646 6.65979 6.87192 6.90715 7.26964 7.66212
8.58421
Molecular weight = 237.12amu
Principal moments of inertia in cm(-1)
A = 0.021425 B = 0.012189 C = 0.009547
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1306.598606 B = 2296.692572 C = 2932.084533
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.231 4.231
3 C 0.193 3.807
4 N -0.468 5.468
5 C -0.355 4.355
6 H 0.105 0.895
7 C 0.045 3.955
8 N -0.888 5.888
9 Si 0.913 3.087
10 H -0.264 1.264
11 H -0.275 1.275
12 H -0.262 1.262
13 C 0.469 3.531
14 O -0.608 6.608
15 C 0.134 3.866
16 O -0.565 6.565
17 C -0.137 4.137
18 C -0.112 4.112
19 C -0.112 4.112
20 C -0.113 4.113
21 H 0.258 0.742
22 H 0.088 0.912
23 H 0.084 0.916
24 H 0.282 0.718
25 H 0.394 0.606
26 H 0.059 0.941
27 H 0.078 0.922
28 H 0.080 0.920
29 H 0.090 0.910
30 H 0.094 0.906
31 H 0.067 0.933
32 H 0.078 0.922
33 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.089 -5.512 -3.573 7.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.232 4.232
3 C 0.072 3.928
4 N -0.189 5.189
5 C -0.482 4.482
6 H 0.122 0.878
7 C -0.162 4.162
8 N -0.524 5.524
9 Si 0.738 3.262
10 H -0.190 1.190
11 H -0.201 1.201
12 H -0.186 1.186
13 C 0.260 3.740
14 O -0.494 6.494
15 C 0.090 3.910
16 O -0.379 6.379
17 C -0.175 4.175
18 C -0.149 4.149
19 C -0.150 4.150
20 C -0.151 4.151
21 H 0.274 0.726
22 H 0.106 0.894
23 H 0.102 0.898
24 H 0.093 0.907
25 H 0.251 0.749
26 H 0.078 0.922
27 H 0.097 0.903
28 H 0.099 0.901
29 H 0.108 0.892
30 H 0.112 0.888
31 H 0.086 0.914
32 H 0.097 0.903
33 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 2.677 -5.956 -4.156 7.741
hybrid contribution 0.297 1.604 -0.165 1.639
sum 2.974 -4.352 -4.321 6.816
Atomic orbital electron populations
1.25713 0.96569 0.98912 0.99429 1.23963 0.95665 1.01999 1.01592
1.18703 0.85144 0.93563 0.95427 1.43822 1.57556 1.08061 1.09423
1.19417 1.31858 1.15407 0.81494 0.87768 1.25992 0.95859 0.96922
0.97412 1.69710 1.38321 1.25301 1.19060 0.86268 0.79382 0.79802
0.80758 1.18987 1.20057 1.18642 1.22132 0.79018 0.84701 0.88198
1.90489 1.56587 1.80384 1.21916 1.21721 0.93607 0.93373 0.82270
1.86452 1.63897 1.62825 1.24774 1.22935 0.92393 0.99829 1.02376
1.22496 0.99460 0.92149 1.00783 1.22340 0.92435 1.00194 1.00008
1.22218 1.00050 0.91810 1.01014 0.72616 0.89361 0.89817 0.90746
0.74874 0.92234 0.90336 0.90121 0.89184 0.88760 0.91402 0.90340
0.91418
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -6.97 19.25 74.32 1.43 -5.53 16
2 C -0.23 -10.25 13.67 31.12 0.43 -9.83 16
3 C 0.19 8.95 4.53 84.57 0.38 9.34 16
4 N -0.47 -22.93 1.93 -645.42 -1.25 -24.18 16
5 C -0.35 -17.90 7.57 84.04 0.64 -17.26 16
6 H 0.11 5.61 5.27 -2.91 -0.02 5.60 16
7 C 0.04 2.22 5.43 84.93 0.46 2.68 16
8 N -0.89 -46.16 13.96 21.66 0.30 -45.85 16
9 Si 0.91 39.55 24.92 68.60 1.71 41.26 16
10 H -0.26 -11.08 6.87 99.48 0.68 -10.40 16
11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16
12 H -0.26 -11.46 7.07 99.48 0.70 -10.75 16
13 C 0.47 22.64 6.53 87.66 0.57 23.22 16
14 O -0.61 -31.32 15.04 -3.05 -0.05 -31.37 16
15 C 0.13 5.49 0.97 -10.81 -0.01 5.48 16
16 O -0.57 -24.41 11.43 -148.98 -1.70 -26.11 16
17 C -0.14 -4.82 5.98 31.67 0.19 -4.63 16
18 C -0.11 -2.93 6.91 31.89 0.22 -2.71 16
19 C -0.11 -3.01 6.83 31.67 0.22 -2.79 16
20 C -0.11 -4.00 6.16 31.32 0.19 -3.80 16
21 H 0.26 6.50 7.80 -4.43 -0.03 6.46 16
22 H 0.09 3.98 7.49 -2.39 -0.02 3.96 16
23 H 0.08 3.79 4.16 -2.39 -0.01 3.78 16
24 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16
25 H 0.39 17.15 5.54 -74.06 -0.41 16.74 16
26 H 0.06 2.19 7.85 -2.39 -0.02 2.17 16
27 H 0.08 2.79 7.66 -2.39 -0.02 2.78 16
28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16
31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
32 H 0.08 2.65 7.95 -2.39 -0.02 2.63 16
33 H 0.07 2.65 6.58 -2.38 -0.02 2.64 16
Total: -1.00 -61.14 273.33 4.42 -56.72
By element:
Atomic # 1 Polarization: 34.69 SS G_CDS: 0.69 Total: 35.38 kcal
Atomic # 6 Polarization: -10.56 SS G_CDS: 4.72 Total: -5.84 kcal
Atomic # 7 Polarization: -69.09 SS G_CDS: -0.94 Total: -70.03 kcal
Atomic # 8 Polarization: -55.73 SS G_CDS: -1.75 Total: -57.48 kcal
Atomic # 14 Polarization: 39.55 SS G_CDS: 1.71 Total: 41.26 kcal
Total: -61.14 4.42 -56.72 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281136375.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.701 kcal
(2) G-P(sol) polarization free energy of solvation -61.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds