Wall clock time and date at job start Sun Mar 29 2020 22:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46792 * 233.63328 * 3 2 1 5 5 C 1.36947 * 119.99714 * 264.22877 * 4 3 2 6 6 H 1.08003 * 119.99538 * 196.86616 * 5 4 3 7 7 C 1.38809 * 119.99831 * 16.86476 * 5 4 3 8 8 N 1.31620 * 120.00116 * 22.15923 * 7 5 4 9 9 Si 1.86800 * 119.99760 * 202.15808 * 7 5 4 10 10 H 1.48497 * 109.47188 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46991 * 120.00240 * 9 7 5 12 12 H 1.48502 * 109.47099 * 240.00309 * 9 7 5 13 13 C 1.46493 * 120.00207 * 84.23375 * 4 3 2 14 14 C 1.53011 * 109.47004 * 269.99753 * 13 4 3 15 15 C 1.52998 * 109.47191 * 180.02562 * 14 13 4 16 16 H 1.09001 * 110.32588 * 307.23835 * 15 14 13 17 17 C 1.54492 * 110.36536 * 185.00155 * 15 14 13 18 18 C 1.54578 * 102.14088 * 225.81288 * 17 15 14 19 19 O 1.45828 * 104.44450 * 26.84987 * 18 17 15 20 20 C 1.34067 * 109.90699 * 329.39345 * 19 18 17 21 21 O 1.20826 * 125.09125 * 200.84805 * 20 19 18 22 22 H 4.40641 * 5.51406 * 179.97438 * 4 1 2 23 23 H 1.08994 * 109.47073 * 113.63577 * 3 2 1 24 24 H 1.08996 * 109.47704 * 353.62795 * 3 2 1 25 25 H 0.97000 * 119.99896 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47134 * 149.99901 * 13 4 3 27 27 H 1.08999 * 109.47240 * 29.99436 * 13 4 3 28 28 H 1.08994 * 109.47142 * 59.99830 * 14 13 4 29 29 H 1.08999 * 109.46864 * 299.99914 * 14 13 4 30 30 H 1.08998 * 110.86928 * 343.97561 * 17 15 14 31 31 H 1.09002 * 110.86493 * 107.44712 * 17 15 14 32 32 H 1.09003 * 110.43119 * 145.59118 * 18 17 15 33 33 H 1.08994 * 110.44085 * 267.98328 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8199 1.1123 5 6 3.4739 2.1295 0.9004 6 1 4.0785 2.6544 1.6252 7 6 3.0416 2.7820 -0.2459 8 7 1.9882 2.3380 -0.8983 9 14 3.9548 4.2904 -0.8626 10 1 5.0958 4.5823 0.0418 11 1 4.4637 4.0345 -2.2341 12 1 3.0312 5.4530 -0.8862 13 6 3.2581 0.2383 2.4510 14 6 1.9479 0.4356 3.2164 15 6 2.0778 -0.1713 4.6148 16 1 2.4173 -1.2050 4.5489 17 6 0.7274 -0.0954 5.3614 18 6 1.1539 0.4267 6.7525 19 8 2.3780 1.1779 6.4995 20 6 3.0326 0.6463 5.4573 21 8 4.2088 0.7973 5.2256 22 1 -1.0502 0.0000 -0.0004 23 1 3.0091 0.4128 -0.9414 24 1 3.0099 -1.0204 0.1140 25 1 1.6859 2.7943 -1.6992 26 1 4.0697 0.7303 2.9871 27 1 3.4722 -0.8271 2.3659 28 1 1.1364 -0.0564 2.6804 29 1 1.7338 1.5010 3.3015 30 1 0.0527 0.6077 4.8730 31 1 0.2696 -1.0817 5.4370 32 1 0.3852 1.0795 7.1660 33 1 1.3489 -0.4060 7.4282 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281244384.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:54 Heat of formation + Delta-G solvation = -4.668675 kcal Electronic energy + Delta-G solvation = -16958.088831 eV Core-core repulsion = 14179.569419 eV Total energy + Delta-G solvation = -2778.519412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84944 -37.23668 -36.39573 -34.10649 -31.54202 -31.34054 -29.46130 -26.72720 -25.87198 -23.34399 -22.39073 -20.82957 -19.98565 -17.49318 -17.17153 -16.76136 -16.34657 -15.73934 -14.89274 -14.25348 -13.83067 -13.71409 -13.58808 -13.36763 -12.82388 -12.32274 -12.11398 -11.81872 -11.40322 -11.28826 -10.99225 -10.89126 -10.75837 -10.50326 -10.37985 -10.18049 -9.88185 -9.52518 -8.87553 -8.73680 -8.38833 -6.95967 -5.75313 -3.14552 2.31872 3.35561 3.40220 3.48878 3.52469 4.14497 4.19401 4.35254 4.38967 4.57314 4.64810 4.84312 5.22292 5.31425 5.39795 5.50745 5.63206 5.80004 5.82806 6.02133 6.05602 6.30983 6.49319 6.70306 6.82622 6.86347 7.08374 7.26842 7.44346 7.73320 7.82892 8.33491 9.14320 9.21067 9.82686 10.28463 11.28764 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025195 B = 0.007649 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.059448 B = 3659.964349 C = 4265.796888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.089 4.089 3 C 0.264 3.736 4 N -0.586 5.586 5 C -0.259 4.259 6 H 0.076 0.924 7 C 0.001 3.999 8 N -0.891 5.891 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.293 1.293 13 C 0.142 3.858 14 C -0.122 4.122 15 C -0.150 4.150 16 H 0.110 0.890 17 C -0.154 4.154 18 C 0.055 3.945 19 O -0.353 6.353 20 C 0.486 3.514 21 O -0.447 6.447 22 H 0.189 0.811 23 H 0.097 0.903 24 H 0.036 0.964 25 H 0.253 0.747 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 -7.463 10.947 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.092 4.092 3 C 0.139 3.861 4 N -0.306 5.306 5 C -0.388 4.388 6 H 0.093 0.907 7 C -0.198 4.198 8 N -0.535 5.535 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.220 1.220 13 C 0.015 3.985 14 C -0.162 4.162 15 C -0.171 4.171 16 H 0.128 0.872 17 C -0.191 4.191 18 C -0.020 4.020 19 O -0.271 6.271 20 C 0.325 3.675 21 O -0.329 6.329 22 H 0.206 0.794 23 H 0.115 0.885 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.425 -7.120 10.809 13.389 hybrid contribution -0.329 0.948 -0.422 1.089 sum -3.755 -6.172 10.388 12.653 Atomic orbital electron populations 1.24143 0.95281 1.07870 1.05477 1.24375 0.95303 0.93811 0.95696 1.17856 0.82839 0.91751 0.93657 1.44197 1.74604 1.09443 1.02313 1.19303 1.25920 0.87903 1.05672 0.90662 1.24883 0.96609 0.98240 1.00051 1.70134 1.21712 1.41778 1.19861 0.86284 0.79637 0.82562 0.78740 1.20254 1.21542 1.21990 1.21069 0.94691 0.96507 0.86254 1.22250 1.02780 1.01120 0.90099 1.22646 0.94088 1.01816 0.98535 0.87220 1.23074 0.97730 1.03636 0.94708 1.24066 0.84217 0.95952 0.97762 1.87007 1.36527 1.53457 1.50059 1.23210 0.87537 0.77004 0.79700 1.90699 1.14370 1.57198 1.70682 0.79411 0.88542 0.94591 0.93698 0.91781 0.94252 0.90775 0.91511 0.89006 0.88841 0.87540 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.87 19.25 29.55 0.57 -6.31 16 2 C -0.09 -2.12 10.54 -37.12 -0.39 -2.52 16 3 C 0.26 6.29 5.45 -6.83 -0.04 6.26 16 4 N -0.59 -14.56 2.50 -176.57 -0.44 -15.00 16 5 C -0.26 -7.14 9.66 -15.06 -0.15 -7.28 16 6 H 0.08 2.11 7.90 -52.48 -0.41 1.69 16 7 C 0.00 0.02 4.85 -17.43 -0.08 -0.07 16 8 N -0.89 -25.43 9.50 55.49 0.53 -24.91 16 9 Si 0.90 22.01 29.61 -169.99 -5.03 16.98 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 C 0.14 2.97 5.52 -4.04 -0.02 2.95 16 14 C -0.12 -2.25 4.72 -26.73 -0.13 -2.37 16 15 C -0.15 -2.10 2.99 -90.68 -0.27 -2.37 16 16 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.15 -1.56 6.79 -25.12 -0.17 -1.73 16 18 C 0.05 0.51 7.90 37.99 0.30 0.81 16 19 O -0.35 -5.23 11.05 -38.48 -0.43 -5.65 16 20 C 0.49 8.08 7.76 36.31 0.28 8.37 16 21 O -0.45 -9.04 16.18 -18.41 -0.30 -9.34 16 22 H 0.19 3.51 7.80 -54.08 -0.42 3.09 16 23 H 0.10 2.51 6.42 -51.93 -0.33 2.18 16 24 H 0.04 0.75 7.97 -51.93 -0.41 0.33 16 25 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.06 1.43 6.17 -51.93 -0.32 1.11 16 27 H 0.04 0.74 7.95 -51.93 -0.41 0.33 16 28 H 0.07 1.40 7.20 -51.93 -0.37 1.03 16 29 H 0.07 1.41 8.13 -51.93 -0.42 0.98 16 30 H 0.09 0.99 7.81 -51.93 -0.41 0.59 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 283.86 15.07 4.28 4.28 Total: -1.00 -32.21 283.86 -5.84 -38.04 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.34 Total: -0.13 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -0.10 Total: -4.27 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.08 Total: -39.91 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.72 Total: -14.99 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.21 -5.84 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281244384.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.373 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds