Wall clock time and date at job start Sun Mar 29 2020 22:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46792 * 233.63328 * 3 2 1 5 5 C 1.36947 * 119.99714 * 264.22877 * 4 3 2 6 6 H 1.08003 * 119.99538 * 196.86616 * 5 4 3 7 7 C 1.38809 * 119.99831 * 16.86476 * 5 4 3 8 8 N 1.31620 * 120.00116 * 22.15923 * 7 5 4 9 9 Si 1.86800 * 119.99760 * 202.15808 * 7 5 4 10 10 H 1.48497 * 109.47188 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46991 * 120.00240 * 9 7 5 12 12 H 1.48502 * 109.47099 * 240.00309 * 9 7 5 13 13 C 1.46493 * 120.00207 * 84.23375 * 4 3 2 14 14 C 1.53011 * 109.47004 * 269.99753 * 13 4 3 15 15 C 1.52998 * 109.47191 * 180.02562 * 14 13 4 16 16 H 1.09001 * 110.32588 * 307.23835 * 15 14 13 17 17 C 1.54492 * 110.36536 * 185.00155 * 15 14 13 18 18 C 1.54578 * 102.14088 * 225.81288 * 17 15 14 19 19 O 1.45828 * 104.44450 * 26.84987 * 18 17 15 20 20 C 1.34067 * 109.90699 * 329.39345 * 19 18 17 21 21 O 1.20826 * 125.09125 * 200.84805 * 20 19 18 22 22 H 4.40641 * 5.51406 * 179.97438 * 4 1 2 23 23 H 1.08994 * 109.47073 * 113.63577 * 3 2 1 24 24 H 1.08996 * 109.47704 * 353.62795 * 3 2 1 25 25 H 0.97000 * 119.99896 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47134 * 149.99901 * 13 4 3 27 27 H 1.08999 * 109.47240 * 29.99436 * 13 4 3 28 28 H 1.08994 * 109.47142 * 59.99830 * 14 13 4 29 29 H 1.08999 * 109.46864 * 299.99914 * 14 13 4 30 30 H 1.08998 * 110.86928 * 343.97561 * 17 15 14 31 31 H 1.09002 * 110.86493 * 107.44712 * 17 15 14 32 32 H 1.09003 * 110.43119 * 145.59118 * 18 17 15 33 33 H 1.08994 * 110.44085 * 267.98328 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8199 1.1123 5 6 3.4739 2.1295 0.9004 6 1 4.0785 2.6544 1.6252 7 6 3.0416 2.7820 -0.2459 8 7 1.9882 2.3380 -0.8983 9 14 3.9548 4.2904 -0.8626 10 1 5.0958 4.5823 0.0418 11 1 4.4637 4.0345 -2.2341 12 1 3.0312 5.4530 -0.8862 13 6 3.2581 0.2383 2.4510 14 6 1.9479 0.4356 3.2164 15 6 2.0778 -0.1713 4.6148 16 1 2.4173 -1.2050 4.5489 17 6 0.7274 -0.0954 5.3614 18 6 1.1539 0.4267 6.7525 19 8 2.3780 1.1779 6.4995 20 6 3.0326 0.6463 5.4573 21 8 4.2088 0.7973 5.2256 22 1 -1.0502 0.0000 -0.0004 23 1 3.0091 0.4128 -0.9414 24 1 3.0099 -1.0204 0.1140 25 1 1.6859 2.7943 -1.6992 26 1 4.0697 0.7303 2.9871 27 1 3.4722 -0.8271 2.3659 28 1 1.1364 -0.0564 2.6804 29 1 1.7338 1.5010 3.3015 30 1 0.0527 0.6077 4.8730 31 1 0.2696 -1.0817 5.4370 32 1 0.3852 1.0795 7.1660 33 1 1.3489 -0.4060 7.4282 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281244384.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:53 Heat of formation + Delta-G solvation = -23.853936 kcal Electronic energy + Delta-G solvation = -16958.920767 eV Core-core repulsion = 14179.569419 eV Total energy + Delta-G solvation = -2779.351347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.99869 -38.53627 -38.18080 -35.48909 -33.48115 -32.98754 -30.81939 -28.16810 -27.74164 -25.02529 -23.36520 -22.47587 -21.29926 -19.35175 -18.35528 -18.19393 -17.90124 -17.00921 -16.76416 -15.78450 -15.46523 -15.21093 -14.93302 -14.76603 -14.36518 -13.75473 -13.49259 -13.27431 -13.11281 -12.81410 -12.72481 -12.44433 -12.29538 -12.22889 -11.90032 -11.75761 -11.39010 -10.98655 -10.74692 -10.60557 -10.27229 -8.94067 -7.85899 -5.25534 1.06464 1.42828 1.46525 1.56416 2.30935 2.37367 2.54488 2.61979 3.03401 3.24889 3.46525 3.64028 3.97480 4.03406 4.14079 4.24461 4.43829 4.50890 4.69776 4.76529 4.86572 4.93184 4.94713 5.08935 5.24167 5.32266 5.42419 5.63689 5.71224 5.82943 6.28763 6.47231 7.10635 7.39613 7.83384 8.24351 9.15518 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025195 B = 0.007649 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.059448 B = 3659.964349 C = 4265.796888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.127 4.127 3 C 0.266 3.734 4 N -0.601 5.601 5 C -0.269 4.269 6 H 0.060 0.940 7 C -0.042 4.042 8 N -0.908 5.908 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.295 1.295 13 C 0.139 3.861 14 C -0.105 4.105 15 C -0.143 4.143 16 H 0.136 0.864 17 C -0.143 4.143 18 C 0.049 3.951 19 O -0.373 6.373 20 C 0.481 3.519 21 O -0.497 6.497 22 H 0.222 0.778 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.248 0.752 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 -8.710 12.102 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.130 4.130 3 C 0.141 3.859 4 N -0.322 5.322 5 C -0.399 4.399 6 H 0.078 0.922 7 C -0.238 4.238 8 N -0.553 5.553 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.223 1.223 13 C 0.013 3.987 14 C -0.145 4.145 15 C -0.163 4.163 16 H 0.153 0.847 17 C -0.181 4.181 18 C -0.023 4.023 19 O -0.290 6.290 20 C 0.324 3.676 21 O -0.383 6.383 22 H 0.239 0.761 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.008 -8.387 11.999 15.472 hybrid contribution 0.106 1.304 -0.712 1.490 sum -4.902 -7.082 11.287 14.198 Atomic orbital electron populations 1.24939 0.96213 1.06221 1.03735 1.24533 0.95867 0.95333 0.97292 1.17757 0.83365 0.92664 0.92081 1.44318 1.75046 1.08683 1.04114 1.19377 1.25644 0.89240 1.05615 0.92221 1.25460 0.97341 1.00762 1.00267 1.70271 1.22520 1.42701 1.19818 0.85403 0.78408 0.79672 0.78099 1.20183 1.21198 1.22272 1.21159 0.95474 0.97290 0.84764 1.21893 1.00831 0.99159 0.92631 1.22599 0.96054 1.02027 0.95607 0.84679 1.23111 0.95146 1.05712 0.94100 1.24548 0.82674 0.97201 0.97911 1.86973 1.38449 1.54223 1.49404 1.23680 0.87291 0.76467 0.80177 1.90663 1.16643 1.59112 1.71915 0.76128 0.91502 0.91699 0.94280 0.93853 0.91813 0.90808 0.95099 0.89831 0.84997 0.85034 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.46 19.25 74.32 1.43 -11.03 16 2 C -0.13 -6.00 10.54 31.13 0.33 -5.67 16 3 C 0.27 12.72 5.45 84.57 0.46 13.18 16 4 N -0.60 -30.29 2.50 -712.54 -1.78 -32.08 16 5 C -0.27 -15.21 9.66 84.03 0.81 -14.40 16 6 H 0.06 3.48 7.90 -2.91 -0.02 3.46 16 7 C -0.04 -2.35 4.85 84.86 0.41 -1.94 16 8 N -0.91 -52.43 9.50 21.65 0.21 -52.23 16 9 Si 0.96 46.14 29.61 68.60 2.03 48.17 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 13 C 0.14 5.84 5.52 86.38 0.48 6.32 16 14 C -0.10 -3.81 4.72 30.60 0.14 -3.67 16 15 C -0.14 -3.70 2.99 -10.84 -0.03 -3.73 16 16 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 17 C -0.14 -2.37 6.79 31.64 0.21 -2.16 16 18 C 0.05 0.74 7.90 72.52 0.57 1.31 16 19 O -0.37 -10.55 11.05 -50.19 -0.55 -11.10 16 20 C 0.48 15.83 7.76 71.43 0.55 16.39 16 21 O -0.50 -20.65 16.18 21.64 0.35 -20.30 16 22 H 0.22 7.53 7.80 -4.41 -0.03 7.49 16 23 H 0.07 3.56 6.42 -2.39 -0.02 3.55 16 24 H 0.07 2.64 7.97 -2.39 -0.02 2.62 16 25 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 26 H 0.04 2.00 6.17 -2.39 -0.01 1.99 16 27 H 0.06 2.33 7.95 -2.39 -0.02 2.31 16 28 H 0.07 2.69 7.20 -2.39 -0.02 2.67 16 29 H 0.03 1.32 8.13 -2.39 -0.02 1.30 16 30 H 0.08 1.56 7.81 -2.39 -0.02 1.54 16 31 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.00 283.86 6.72 -65.28 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.09 Total: 7.65 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.38 Total: -5.40 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -1.58 Total: -84.30 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.20 Total: -31.40 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -72.00 6.72 -65.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281244384.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.429 kcal (2) G-P(sol) polarization free energy of solvation -71.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds