Wall clock time and date at job start Sun Mar 29 2020 21:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76209 * 102.99804 * 2 1 4 4 C 1.38968 * 120.07868 * 180.02562 * 3 2 1 5 5 C 1.38085 * 119.91541 * 179.74367 * 4 3 2 6 6 C 1.38303 * 120.08204 * 0.23776 * 5 4 3 7 7 C 1.50695 * 119.91768 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47756 * 19.99399 * 7 6 5 9 9 C 1.53005 * 109.47159 * 259.99710 * 7 6 5 10 10 N 1.46504 * 109.47473 * 139.99817 * 7 6 5 11 11 C 1.36930 * 120.00122 * 204.99724 * 10 7 6 12 12 H 1.07992 * 120.00326 * 359.97438 * 11 10 7 13 13 C 1.38816 * 119.99710 * 179.97438 * 11 10 7 14 14 N 1.31616 * 120.00080 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99894 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46902 * 90.00263 * 15 13 11 17 17 H 1.48500 * 109.47040 * 210.00078 * 15 13 11 18 18 H 1.48500 * 109.47286 * 330.00254 * 15 13 11 19 19 C 1.38301 * 120.15818 * 359.97438 * 6 5 4 20 20 C 1.38079 * 120.08174 * 0.04605 * 19 6 5 21 21 H 1.09002 * 109.47304 * 300.00002 * 1 2 3 22 22 H 1.08998 * 109.47528 * 60.00130 * 1 2 3 23 23 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 24 24 H 1.08002 * 120.04475 * 0.02806 * 4 3 2 25 25 H 1.07999 * 119.95830 * 180.25063 * 5 4 3 26 26 H 1.09007 * 109.47114 * 59.99719 * 9 7 6 27 27 H 1.08998 * 109.47514 * 180.02562 * 9 7 6 28 28 H 1.09006 * 109.47050 * 300.00201 * 9 7 6 29 29 H 0.97005 * 119.99131 * 24.99846 * 10 7 6 30 30 H 0.97006 * 120.00110 * 179.97438 * 14 13 11 31 31 H 1.08006 * 119.95635 * 180.02562 * 19 6 5 32 32 H 1.08003 * 120.03812 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1251 -0.0005 5 6 3.8454 3.4714 -0.0059 6 6 2.8326 4.4132 -0.0057 7 6 3.1716 5.8815 -0.0122 8 1 4.1930 6.0172 -0.3676 9 6 3.0471 6.4399 1.4069 10 7 2.2474 6.5923 -0.8994 11 6 2.6242 7.7770 -1.4734 12 1 3.6024 8.1877 -1.2719 13 6 1.7487 8.4501 -2.3145 14 7 0.5563 7.9498 -2.5598 15 14 2.2624 10.0666 -3.0970 16 1 2.9177 9.7984 -4.4024 17 1 1.0634 10.9163 -3.3104 18 1 3.2145 10.7701 -2.2005 19 6 1.5095 4.0106 -0.0008 20 6 1.1952 2.6661 0.0050 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 4.3302 1.3903 -0.0014 25 1 4.8776 3.7894 -0.0104 26 1 3.7347 5.9111 2.0671 27 1 3.2918 7.5021 1.4022 28 1 2.0256 6.3044 1.7624 29 1 1.3686 6.2235 -1.0801 30 1 -0.0557 8.4204 -3.1472 31 1 0.7211 4.7488 -0.0011 32 1 0.1617 2.3525 0.0093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281478323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:32 Heat of formation + Delta-G solvation = 29.320438 kcal Electronic energy + Delta-G solvation = -14199.878045 eV Core-core repulsion = 11865.585383 eV Total energy + Delta-G solvation = -2334.292663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.05723 -35.39976 -32.35450 -31.00905 -29.78413 -28.91813 -28.02021 -24.18602 -22.91473 -22.13941 -19.84969 -17.75146 -17.13408 -15.68370 -15.08008 -14.62078 -14.28812 -13.93460 -13.88088 -13.38527 -13.30025 -13.01388 -12.64498 -12.29391 -12.11314 -11.82597 -11.29336 -11.04689 -10.84488 -10.72075 -10.35861 -10.17392 -9.97765 -9.68743 -9.29405 -8.92318 -8.68286 -7.23697 -6.99654 -5.78910 -3.07532 1.50248 1.58327 1.67978 2.44243 3.42829 3.47915 3.49470 4.00885 4.58140 4.95488 4.97820 5.07043 5.15813 5.33838 5.52345 5.54241 5.65633 5.73299 5.88476 5.97814 6.16047 6.28659 6.34689 6.47380 6.53344 6.61705 6.74224 6.95243 7.16657 7.23544 7.68553 8.39486 9.50843 10.06674 10.41960 11.43924 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.038726 B = 0.005364 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.851983 B = 5219.207005 C = 5588.612970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.139 6.139 3 C -0.097 4.097 4 C -0.101 4.101 5 C -0.102 4.102 6 C -0.065 4.065 7 C 0.205 3.795 8 H 0.057 0.943 9 C -0.159 4.159 10 N -0.722 5.722 11 C -0.239 4.239 12 H 0.072 0.928 13 C -0.013 4.013 14 N -0.933 5.933 15 Si 0.907 3.093 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.281 1.281 19 C -0.086 4.086 20 C -0.130 4.130 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.122 0.878 25 H 0.125 0.875 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.130 0.870 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 -13.617 6.802 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.101 5.899 3 C -0.210 4.210 4 C -0.124 4.124 5 C -0.122 4.122 6 C -0.068 4.068 7 C 0.096 3.904 8 H 0.074 0.926 9 C -0.219 4.219 10 N -0.364 5.364 11 C -0.370 4.370 12 H 0.090 0.910 13 C -0.209 4.209 14 N -0.582 5.582 15 Si 0.738 3.262 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.207 1.207 19 C -0.106 4.106 20 C -0.153 4.153 21 H 0.102 0.898 22 H 0.103 0.897 23 H 0.122 0.878 24 H 0.140 0.860 25 H 0.143 0.857 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.065 0.935 31 H 0.148 0.852 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.597 -14.500 6.727 16.194 hybrid contribution -0.991 1.906 -0.589 2.228 sum 1.605 -12.593 6.138 14.101 Atomic orbital electron populations 1.23615 0.94839 1.06630 1.05812 1.85214 1.06489 1.04646 1.93529 1.21508 0.96771 0.95442 1.07236 1.20621 0.93938 0.95943 1.01890 1.20957 0.99217 0.91888 1.00184 1.20509 0.93048 0.96937 0.96318 1.19229 0.94904 0.85406 0.90883 0.92553 1.22422 1.00570 1.01196 0.97760 1.42529 1.15782 1.24063 1.54024 1.19254 0.99319 0.97236 1.21198 0.91028 1.24737 0.96320 0.99248 1.00565 1.69658 1.07324 1.40073 1.41120 0.86182 0.77202 0.83403 0.79364 1.21702 1.21783 1.20708 1.20976 0.96893 0.94871 0.97861 1.21101 0.97773 0.93254 1.03213 0.89829 0.89692 0.87788 0.86041 0.85688 0.94278 0.92382 0.93376 0.78049 0.93481 0.85220 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.15 101.05 0.92 -0.39 16 2 S -0.14 -1.74 22.57 -107.50 -2.43 -4.16 16 3 C -0.10 -1.46 6.11 -39.04 -0.24 -1.69 16 4 C -0.10 -1.49 9.79 -39.37 -0.39 -1.87 16 5 C -0.10 -1.61 9.66 -39.61 -0.38 -1.99 16 6 C -0.07 -1.18 4.96 -104.58 -0.52 -1.69 16 7 C 0.21 4.14 3.09 -69.08 -0.21 3.93 16 8 H 0.06 1.14 7.94 -51.93 -0.41 0.72 16 9 C -0.16 -2.90 9.47 37.16 0.35 -2.55 16 10 N -0.72 -18.05 5.07 -54.55 -0.28 -18.33 16 11 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 12 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 13 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 14 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 15 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.09 -1.52 9.04 -39.62 -0.36 -1.88 16 20 C -0.13 -2.02 9.36 -39.37 -0.37 -2.39 16 21 H 0.08 0.74 7.74 -51.92 -0.40 0.34 16 22 H 0.08 0.80 7.76 -51.93 -0.40 0.40 16 23 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 24 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 25 H 0.13 1.70 8.03 -52.49 -0.42 1.28 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.38 10.12 6.06 -40.82 -0.25 9.87 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.13 2.41 6.91 -52.48 -0.36 2.04 16 32 H 0.12 1.58 5.88 -52.48 -0.31 1.28 16 LS Contribution 284.71 15.07 4.29 4.29 Total: -1.00 -30.19 284.71 -8.36 -38.55 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.22 Total: 7.47 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.43 Total: -17.74 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.45 Total: -45.69 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.43 Total: -4.16 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.19 -8.36 -38.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281478323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.872 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds