Wall clock time and date at job start Sun Mar 29 2020 21:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76209 * 102.99804 * 2 1 4 4 C 1.38968 * 120.07868 * 180.02562 * 3 2 1 5 5 C 1.38085 * 119.91541 * 179.74367 * 4 3 2 6 6 C 1.38303 * 120.08204 * 0.23776 * 5 4 3 7 7 C 1.50695 * 119.91768 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47756 * 19.99399 * 7 6 5 9 9 C 1.53005 * 109.47159 * 259.99710 * 7 6 5 10 10 N 1.46504 * 109.47473 * 139.99817 * 7 6 5 11 11 C 1.36930 * 120.00122 * 204.99724 * 10 7 6 12 12 H 1.07992 * 120.00326 * 359.97438 * 11 10 7 13 13 C 1.38816 * 119.99710 * 179.97438 * 11 10 7 14 14 N 1.31616 * 120.00080 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99894 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46902 * 90.00263 * 15 13 11 17 17 H 1.48500 * 109.47040 * 210.00078 * 15 13 11 18 18 H 1.48500 * 109.47286 * 330.00254 * 15 13 11 19 19 C 1.38301 * 120.15818 * 359.97438 * 6 5 4 20 20 C 1.38079 * 120.08174 * 0.04605 * 19 6 5 21 21 H 1.09002 * 109.47304 * 300.00002 * 1 2 3 22 22 H 1.08998 * 109.47528 * 60.00130 * 1 2 3 23 23 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 24 24 H 1.08002 * 120.04475 * 0.02806 * 4 3 2 25 25 H 1.07999 * 119.95830 * 180.25063 * 5 4 3 26 26 H 1.09007 * 109.47114 * 59.99719 * 9 7 6 27 27 H 1.08998 * 109.47514 * 180.02562 * 9 7 6 28 28 H 1.09006 * 109.47050 * 300.00201 * 9 7 6 29 29 H 0.97005 * 119.99131 * 24.99846 * 10 7 6 30 30 H 0.97006 * 120.00110 * 179.97438 * 14 13 11 31 31 H 1.08006 * 119.95635 * 180.02562 * 19 6 5 32 32 H 1.08003 * 120.03812 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1251 -0.0005 5 6 3.8454 3.4714 -0.0059 6 6 2.8326 4.4132 -0.0057 7 6 3.1716 5.8815 -0.0122 8 1 4.1930 6.0172 -0.3676 9 6 3.0471 6.4399 1.4069 10 7 2.2474 6.5923 -0.8994 11 6 2.6242 7.7770 -1.4734 12 1 3.6024 8.1877 -1.2719 13 6 1.7487 8.4501 -2.3145 14 7 0.5563 7.9498 -2.5598 15 14 2.2624 10.0666 -3.0970 16 1 2.9177 9.7984 -4.4024 17 1 1.0634 10.9163 -3.3104 18 1 3.2145 10.7701 -2.2005 19 6 1.5095 4.0106 -0.0008 20 6 1.1952 2.6661 0.0050 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 4.3302 1.3903 -0.0014 25 1 4.8776 3.7894 -0.0104 26 1 3.7347 5.9111 2.0671 27 1 3.2918 7.5021 1.4022 28 1 2.0256 6.3044 1.7624 29 1 1.3686 6.2235 -1.0801 30 1 -0.0557 8.4204 -3.1472 31 1 0.7211 4.7488 -0.0011 32 1 0.1617 2.3525 0.0093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281478323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:32 Heat of formation + Delta-G solvation = 12.461282 kcal Electronic energy + Delta-G solvation = -14200.609113 eV Core-core repulsion = 11865.585383 eV Total energy + Delta-G solvation = -2335.023730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35219 -37.07860 -34.23144 -32.22562 -31.36348 -29.99065 -29.42356 -26.08025 -24.37012 -23.44468 -21.34408 -19.43802 -18.57596 -17.11541 -16.56339 -16.13542 -15.57117 -15.41680 -15.01693 -14.77316 -14.52952 -14.38888 -14.06861 -13.54541 -13.50731 -13.12224 -12.98030 -12.76075 -12.50425 -12.23166 -12.15650 -11.68404 -11.61071 -11.17932 -11.01967 -10.45841 -9.91138 -9.03725 -8.29328 -7.94072 -5.22703 0.25138 0.44358 0.62050 1.47794 1.48478 1.49400 1.57652 2.55885 2.75422 3.40502 3.83293 3.94420 4.00669 4.03597 4.25739 4.29254 4.46251 4.47588 4.61971 4.75081 4.83879 4.87992 4.99495 5.04401 5.16858 5.29331 5.35792 5.49875 5.51198 5.78561 5.97120 6.28064 7.34208 8.08535 8.33001 9.29661 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.038726 B = 0.005364 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.851983 B = 5219.207005 C = 5588.612970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.138 6.138 3 C -0.102 4.102 4 C -0.102 4.102 5 C -0.101 4.101 6 C -0.087 4.087 7 C 0.202 3.798 8 H 0.057 0.943 9 C -0.148 4.148 10 N -0.735 5.735 11 C -0.239 4.239 12 H 0.078 0.922 13 C -0.076 4.076 14 N -0.972 5.972 15 Si 0.973 3.027 16 H -0.288 1.288 17 H -0.297 1.297 18 H -0.268 1.268 19 C -0.103 4.103 20 C -0.134 4.134 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.129 0.871 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.374 0.626 30 H 0.250 0.750 31 H 0.109 0.891 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -14.992 7.326 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.103 5.897 3 C -0.214 4.214 4 C -0.125 4.125 5 C -0.121 4.121 6 C -0.090 4.090 7 C 0.094 3.906 8 H 0.075 0.925 9 C -0.208 4.208 10 N -0.376 5.376 11 C -0.370 4.370 12 H 0.096 0.904 13 C -0.268 4.268 14 N -0.623 5.623 15 Si 0.802 3.198 16 H -0.216 1.216 17 H -0.223 1.223 18 H -0.193 1.193 19 C -0.123 4.123 20 C -0.157 4.157 21 H 0.109 0.891 22 H 0.104 0.896 23 H 0.148 0.852 24 H 0.164 0.836 25 H 0.163 0.837 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.207 0.793 30 H 0.059 0.941 31 H 0.127 0.873 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.593 -15.900 7.289 17.856 hybrid contribution -1.286 2.157 -0.686 2.603 sum 2.308 -13.743 6.603 15.421 Atomic orbital electron populations 1.23761 0.92260 1.08462 1.06210 1.85225 1.09356 1.02099 1.93025 1.21836 0.96828 0.97093 1.05635 1.20945 0.94664 0.96013 1.00898 1.21162 0.99623 0.91994 0.99290 1.20340 0.93855 0.95927 0.98863 1.19389 0.93734 0.86752 0.90757 0.92536 1.22258 1.00928 1.00544 0.97094 1.42732 1.16231 1.23909 1.54770 1.19660 0.99271 0.97898 1.20221 0.90376 1.25539 0.96548 1.02764 1.01943 1.69820 1.08511 1.41573 1.42376 0.85149 0.76693 0.79539 0.78456 1.21550 1.22343 1.19263 1.20905 0.96459 0.95630 0.99311 1.21260 0.99093 0.92448 1.02930 0.89100 0.89646 0.85235 0.83630 0.83660 0.91178 0.93699 0.94139 0.79297 0.94092 0.87272 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.15 113.37 1.04 -1.18 16 2 S -0.14 -3.08 22.57 -56.49 -1.27 -4.36 16 3 C -0.10 -2.85 6.11 22.62 0.14 -2.71 16 4 C -0.10 -2.79 9.79 22.41 0.22 -2.57 16 5 C -0.10 -3.00 9.66 22.25 0.21 -2.79 16 6 C -0.09 -3.11 4.96 -19.84 -0.10 -3.20 16 7 C 0.20 8.13 3.09 44.24 0.14 8.27 16 8 H 0.06 2.25 7.94 -2.39 -0.02 2.23 16 9 C -0.15 -5.35 9.47 71.98 0.68 -4.67 16 10 N -0.74 -37.52 5.07 -326.50 -1.66 -39.18 16 11 C -0.24 -13.30 9.93 84.04 0.83 -12.46 16 12 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 13 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 14 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 15 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 16 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 17 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 C -0.10 -3.68 9.04 22.25 0.20 -3.48 16 20 C -0.13 -4.04 9.36 22.41 0.21 -3.83 16 21 H 0.09 1.36 7.74 -2.39 -0.02 1.34 16 22 H 0.08 1.40 7.76 -2.39 -0.02 1.38 16 23 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 25 H 0.15 3.62 8.03 -2.91 -0.02 3.60 16 26 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.37 20.43 6.06 -92.70 -0.56 19.86 16 30 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 31 H 0.11 4.27 6.91 -2.91 -0.02 4.25 16 32 H 0.14 3.49 5.88 -2.91 -0.02 3.47 16 Total: -1.00 -64.76 284.71 3.97 -60.79 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.55 Total: 26.62 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 4.04 Total: -32.53 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -1.37 Total: -98.86 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -1.27 Total: -4.36 kcal Total: -64.76 3.97 -60.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281478323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.251 kcal (2) G-P(sol) polarization free energy of solvation -64.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds