Wall clock time and date at job start Sun Mar 29 2020 22:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47271 * 354.10041 * 3 2 1 5 5 C 1.37093 * 120.00225 * 265.90231 * 4 3 2 6 6 H 1.08003 * 119.99902 * 148.84227 * 5 4 3 7 7 C 1.38948 * 119.99992 * 328.84432 * 5 4 3 8 8 N 1.31415 * 120.00120 * 332.94456 * 7 5 4 9 9 Si 1.86804 * 120.00132 * 152.93743 * 7 5 4 10 10 H 1.48501 * 109.47058 * 85.00141 * 9 7 5 11 11 H 1.48502 * 109.47303 * 204.99994 * 9 7 5 12 12 H 1.48497 * 109.46883 * 325.00064 * 9 7 5 13 13 C 1.34782 * 119.99839 * 85.90278 * 4 3 2 14 14 O 1.21289 * 119.99741 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00090 * 359.97438 * 13 4 3 16 16 C 1.53004 * 109.47364 * 179.97438 * 15 13 4 17 17 H 1.08998 * 110.27044 * 54.30347 * 16 15 13 18 18 C 1.54943 * 110.30934 * 176.39245 * 16 15 13 19 19 C 1.55418 * 100.89052 * 155.28935 * 18 16 15 20 20 C 1.54378 * 102.30946 * 325.98921 * 19 18 16 21 21 O 1.43241 * 107.58995 * 21.28814 * 20 19 18 22 22 H 4.40643 * 5.51503 * 180.02562 * 4 1 2 23 23 H 1.09001 * 109.47066 * 114.10165 * 3 2 1 24 24 H 1.09001 * 109.47037 * 234.09790 * 3 2 1 25 25 H 0.97006 * 120.00075 * 180.02562 * 8 7 5 26 26 H 1.09001 * 109.47456 * 300.00059 * 15 13 4 27 27 H 1.09008 * 109.47120 * 59.99972 * 15 13 4 28 28 H 1.09003 * 111.12259 * 273.27755 * 18 16 15 29 29 H 1.08997 * 111.12828 * 37.44027 * 18 16 15 30 30 H 1.09004 * 110.88118 * 207.74775 * 19 18 16 31 31 H 1.09007 * 110.93531 * 84.25015 * 19 18 16 32 32 H 1.08996 * 109.83395 * 261.77009 * 20 19 18 33 33 H 1.09005 * 109.83028 * 140.79999 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3730 0.1420 5 6 3.4437 -1.8659 1.3834 6 1 3.3147 -2.9172 1.5944 7 6 3.9225 -1.0129 2.3702 8 7 4.5719 0.0796 2.0360 9 14 3.6429 -1.4188 4.1720 10 1 4.7120 -2.3347 4.6448 11 1 3.6733 -0.1680 4.9718 12 1 2.3211 -2.0765 4.3319 13 6 3.2813 -2.1522 -0.9480 14 8 3.6857 -3.2896 -0.8304 15 6 2.9414 -1.6106 -2.3126 16 6 3.1957 -2.6894 -3.3673 17 1 2.6557 -3.6014 -3.1126 18 6 2.7670 -2.1839 -4.7678 19 6 3.6600 -3.0659 -5.6844 20 6 4.9456 -3.2182 -4.8434 21 8 4.6027 -2.9573 -3.4774 22 1 -1.0499 -0.0005 -0.0001 23 1 3.0091 0.4205 -0.9381 24 1 3.0090 0.6035 0.8324 25 1 4.9065 0.6749 2.7249 26 1 1.8914 -1.3189 -2.3366 27 1 3.5648 -0.7419 -2.5243 28 1 1.7087 -2.3741 -4.9471 29 1 3.0008 -1.1266 -4.8924 30 1 3.8702 -2.5589 -6.6262 31 1 3.1962 -4.0360 -5.8632 32 1 5.6947 -2.5016 -5.1800 33 1 5.3328 -4.2326 -4.9402 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281532860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:27 Heat of formation + Delta-G solvation = -42.232514 kcal Electronic energy + Delta-G solvation = -16915.445464 eV Core-core repulsion = 14135.297162 eV Total energy + Delta-G solvation = -2780.148302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88161 -39.75404 -36.99679 -34.43584 -33.27190 -33.02217 -32.42608 -28.57730 -27.77977 -26.05284 -22.80552 -22.32084 -20.61924 -19.76417 -18.36992 -17.97987 -17.62361 -16.79250 -16.58327 -16.19600 -15.87276 -15.39558 -14.77434 -14.39741 -14.06974 -13.98745 -13.60235 -13.47235 -13.01201 -12.86114 -12.60871 -12.54466 -12.19765 -12.04760 -12.02844 -11.63759 -11.38025 -11.21708 -10.75664 -10.39088 -10.32730 -9.63651 -8.42087 -6.03575 1.34773 1.39374 1.52106 1.82895 2.01897 2.03917 2.32470 2.91919 3.00530 3.18306 3.60817 3.72627 3.87651 4.04396 4.10717 4.21779 4.30826 4.48729 4.58289 4.69439 4.79933 4.86417 4.91166 5.02464 5.09522 5.14383 5.21592 5.31318 5.46601 6.13308 6.28300 6.47550 6.80287 7.15642 7.41338 8.04161 8.62938 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.007020 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.812275 B = 3987.889456 C = 4503.411432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.226 4.226 3 C 0.201 3.799 4 N -0.456 5.456 5 C -0.349 4.349 6 H 0.063 0.937 7 C 0.005 3.995 8 N -0.883 5.883 9 Si 0.978 3.022 10 H -0.276 1.276 11 H -0.263 1.263 12 H -0.270 1.270 13 C 0.449 3.551 14 O -0.617 6.617 15 C -0.122 4.122 16 C 0.095 3.905 17 H 0.050 0.950 18 C -0.141 4.141 19 C -0.143 4.143 20 C 0.033 3.967 21 O -0.407 6.407 22 H 0.255 0.745 23 H 0.095 0.905 24 H 0.111 0.889 25 H 0.277 0.723 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 2.484 -12.458 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.227 4.227 3 C 0.079 3.921 4 N -0.175 5.175 5 C -0.477 4.477 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.520 5.520 9 Si 0.801 3.199 10 H -0.201 1.201 11 H -0.187 1.187 12 H -0.195 1.195 13 C 0.239 3.761 14 O -0.502 6.502 15 C -0.162 4.162 16 C 0.038 3.962 17 H 0.068 0.932 18 C -0.178 4.178 19 C -0.181 4.181 20 C -0.043 4.043 21 O -0.328 6.328 22 H 0.271 0.729 23 H 0.113 0.887 24 H 0.129 0.871 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.136 2.097 -12.131 13.756 hybrid contribution 0.062 -0.319 1.040 1.090 sum -6.074 1.778 -11.091 12.770 Atomic orbital electron populations 1.25642 0.96396 0.98523 1.00813 1.24232 0.95634 1.01943 1.00921 1.18562 0.83520 0.85690 1.04377 1.43695 1.56211 1.12013 1.05561 1.19343 1.44810 0.95324 0.88211 0.91946 1.26017 0.93392 0.96274 1.04108 1.70004 1.31126 1.14953 1.35957 0.85214 0.78897 0.78340 0.77488 1.20118 1.18744 1.19524 1.21257 0.80853 0.86812 0.87172 1.90489 1.51206 1.21365 1.87159 1.21777 1.03884 0.99665 0.90891 1.22720 0.82104 0.96011 0.95405 0.93217 1.23347 1.01960 1.01271 0.91247 1.23113 0.94202 1.01294 0.99463 1.23377 0.98638 1.00956 0.81367 1.88591 1.25058 1.91563 1.27544 0.72881 0.88696 0.87130 0.91321 0.86854 0.88377 0.87650 0.88948 0.87250 0.89900 0.90643 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.27 19.25 74.32 1.43 -4.84 16 2 C -0.23 -9.01 13.13 31.13 0.41 -8.60 16 3 C 0.20 9.16 5.25 84.58 0.44 9.61 16 4 N -0.46 -24.74 2.53 -645.42 -1.64 -26.37 16 5 C -0.35 -20.89 9.00 84.04 0.76 -20.14 16 6 H 0.06 4.02 7.68 -2.91 -0.02 4.00 16 7 C 0.00 0.27 4.83 84.93 0.41 0.68 16 8 N -0.88 -48.50 11.44 21.66 0.25 -48.25 16 9 Si 0.98 43.56 29.63 68.60 2.03 45.59 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.45 23.75 7.50 87.65 0.66 24.41 16 14 O -0.62 -38.14 15.35 6.44 0.10 -38.04 16 15 C -0.12 -4.69 4.03 29.85 0.12 -4.57 16 16 C 0.10 3.35 2.91 31.26 0.09 3.44 16 17 H 0.05 1.94 7.95 -2.39 -0.02 1.92 16 18 C -0.14 -3.11 6.58 32.09 0.21 -2.90 16 19 C -0.14 -2.79 7.02 31.89 0.22 -2.57 16 20 C 0.03 0.90 7.80 72.45 0.56 1.47 16 21 O -0.41 -16.48 10.50 -139.48 -1.46 -17.94 16 22 H 0.26 5.30 7.80 -4.42 -0.03 5.26 16 23 H 0.10 3.77 6.61 -2.39 -0.02 3.75 16 24 H 0.11 5.54 5.33 -2.39 -0.01 5.52 16 25 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 26 H 0.11 3.71 7.63 -2.39 -0.02 3.69 16 27 H 0.10 3.51 7.41 -2.38 -0.02 3.49 16 28 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.09 1.81 8.06 -2.39 -0.02 1.79 16 30 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -76.75 285.56 5.69 -71.05 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 1.09 Total: 17.97 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.32 Total: -4.01 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.39 Total: -74.63 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -1.37 Total: -55.98 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -76.75 5.69 -71.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281532860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.822 kcal (2) G-P(sol) polarization free energy of solvation -76.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds