Wall clock time and date at job start Sun Mar 29 2020 21:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76202 * 102.99673 * 2 1 4 4 C 1.38979 * 120.07744 * 179.97438 * 3 2 1 5 5 C 1.38088 * 119.91874 * 179.97438 * 4 3 2 6 6 C 1.38304 * 120.07781 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.91694 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47420 * 340.00135 * 7 6 5 9 9 C 1.53006 * 109.46954 * 99.99944 * 7 6 5 10 10 N 1.46493 * 109.47479 * 219.99771 * 7 6 5 11 11 C 1.36936 * 120.00314 * 154.99980 * 10 7 6 12 12 H 1.08001 * 120.00159 * 0.02562 * 11 10 7 13 13 C 1.38811 * 119.99842 * 180.02562 * 11 10 7 14 14 N 1.31624 * 119.99540 * 179.72505 * 13 11 10 15 15 Si 1.86800 * 120.00451 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72270 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72118 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72153 * 15 13 11 19 19 C 1.38301 * 120.16227 * 0.27206 * 6 5 4 20 20 C 1.38090 * 120.08021 * 359.49162 * 19 6 5 21 21 H 1.09007 * 109.47338 * 60.00042 * 1 2 3 22 22 H 1.09003 * 109.46988 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47655 * 299.99988 * 1 2 3 24 24 H 1.07997 * 120.04123 * 359.95657 * 4 3 2 25 25 H 1.07993 * 119.95910 * 179.97438 * 5 4 3 26 26 H 1.08995 * 109.47185 * 59.99905 * 9 7 6 27 27 H 1.08997 * 109.47326 * 180.02562 * 9 7 6 28 28 H 1.09003 * 109.47067 * 300.00148 * 9 7 6 29 29 H 0.97000 * 120.00040 * 335.00112 * 10 7 6 30 30 H 0.96999 * 119.99889 * 180.27497 * 14 13 11 31 31 H 1.08002 * 119.95812 * 179.72762 * 19 6 5 32 32 H 1.07997 * 120.03895 * 180.27922 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 3.5387 2.1251 0.0005 5 6 3.8456 3.4714 0.0000 6 6 2.8327 4.4132 -0.0016 7 6 3.1717 5.8815 -0.0016 8 1 4.1939 6.0185 0.3512 9 6 3.0442 6.4344 -1.4226 10 7 2.2494 6.5957 0.8847 11 6 2.6274 7.7826 1.4534 12 1 3.6053 8.1926 1.2482 13 6 1.7537 8.4590 2.2936 14 7 2.1191 9.5971 2.8446 15 14 0.0625 7.7497 2.6492 16 1 -0.9084 8.2594 1.6478 17 1 0.1211 6.2679 2.5723 18 1 -0.3695 8.1580 4.0100 19 6 1.5096 4.0107 0.0030 20 6 1.1952 2.6660 -0.0014 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 4.3301 1.3902 0.0017 25 1 4.8776 3.7894 0.0008 26 1 2.0220 6.2974 -1.7754 27 1 3.2898 7.4963 -1.4227 28 1 3.7304 5.9030 -2.0821 29 1 1.3710 6.2277 1.0688 30 1 1.5101 10.0678 3.4349 31 1 0.7212 4.7489 0.0062 32 1 0.1617 2.3524 -0.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281534201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:35 Heat of formation + Delta-G solvation = 33.800846 kcal Electronic energy + Delta-G solvation = -14280.457162 eV Core-core repulsion = 11946.358785 eV Total energy + Delta-G solvation = -2334.098377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21404 -35.60707 -32.36530 -31.16496 -30.15035 -29.12398 -28.35463 -24.13869 -22.89851 -22.14650 -19.92940 -18.12004 -17.43377 -15.71356 -15.31635 -14.64484 -14.26453 -14.25076 -13.98889 -13.54625 -13.28066 -13.14505 -12.61667 -12.43007 -12.34600 -11.94369 -11.64956 -11.19677 -10.93433 -10.77803 -10.50415 -10.21292 -10.05295 -9.61492 -9.42972 -8.96460 -8.82624 -7.36601 -7.29955 -5.79654 -3.15215 1.36404 1.47404 1.53200 2.33421 3.34586 3.36843 3.42581 3.86358 4.56348 4.85572 4.87217 4.92456 5.02380 5.16062 5.34880 5.43281 5.51691 5.56702 5.69377 5.85219 6.01925 6.16286 6.21379 6.31607 6.38775 6.49000 6.60593 6.85728 7.01059 7.09496 7.96082 8.39265 9.16890 9.89391 10.08879 11.38616 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.031446 B = 0.006337 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.206588 B = 4417.413095 C = 4987.422733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.135 6.135 3 C -0.097 4.097 4 C -0.098 4.098 5 C -0.099 4.099 6 C -0.068 4.068 7 C 0.211 3.789 8 H 0.066 0.934 9 C -0.159 4.159 10 N -0.746 5.746 11 C -0.243 4.243 12 H 0.092 0.908 13 C 0.007 3.993 14 N -0.933 5.933 15 Si 0.879 3.121 16 H -0.283 1.283 17 H -0.277 1.277 18 H -0.290 1.290 19 C -0.093 4.093 20 C -0.130 4.130 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.083 0.917 24 H 0.124 0.876 25 H 0.128 0.872 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.361 0.639 30 H 0.260 0.740 31 H 0.124 0.876 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 -17.870 -7.622 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.106 5.894 3 C -0.209 4.209 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.071 4.071 7 C 0.102 3.898 8 H 0.084 0.916 9 C -0.220 4.220 10 N -0.390 5.390 11 C -0.373 4.373 12 H 0.110 0.890 13 C -0.189 4.189 14 N -0.580 5.580 15 Si 0.709 3.291 16 H -0.210 1.210 17 H -0.203 1.203 18 H -0.216 1.216 19 C -0.113 4.113 20 C -0.154 4.154 21 H 0.102 0.898 22 H 0.123 0.877 23 H 0.102 0.898 24 H 0.142 0.858 25 H 0.146 0.854 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.195 0.805 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.831 -18.703 -7.526 20.178 hybrid contribution -2.193 0.748 0.396 2.351 sum -3.024 -17.956 -7.129 19.554 Atomic orbital electron populations 1.23625 0.94910 1.06730 1.05737 1.85269 1.06388 1.04341 1.93406 1.21539 0.96776 0.95599 1.06997 1.20666 0.93966 0.96014 1.01466 1.20984 0.99351 0.91817 0.99723 1.20522 0.93016 0.97026 0.96493 1.19199 0.94973 0.84918 0.90702 0.91641 1.22387 1.00578 1.01693 0.97295 1.42879 1.15345 1.24777 1.55961 1.19076 1.01404 0.95324 1.21477 0.88999 1.24641 0.97954 0.96855 0.99483 1.69694 1.36303 1.16556 1.35469 0.86622 0.85985 0.78652 0.77792 1.21012 1.20297 1.21602 1.20909 0.96754 0.94854 0.98827 1.21085 0.97837 0.93186 1.03276 0.89823 0.87686 0.89769 0.85819 0.85363 0.93477 0.91869 0.93929 0.80494 0.93017 0.85828 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.15 101.05 0.92 -0.29 16 2 S -0.13 -1.57 22.56 -107.50 -2.43 -4.00 16 3 C -0.10 -1.36 6.11 -39.04 -0.24 -1.60 16 4 C -0.10 -1.36 9.79 -39.36 -0.39 -1.74 16 5 C -0.10 -1.46 9.66 -39.61 -0.38 -1.84 16 6 C -0.07 -1.15 4.96 -104.58 -0.52 -1.67 16 7 C 0.21 4.07 3.09 -69.08 -0.21 3.86 16 8 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 9 C -0.16 -2.78 9.47 37.16 0.35 -2.43 16 10 N -0.75 -17.57 4.87 -54.55 -0.27 -17.84 16 11 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 12 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 13 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 14 N -0.93 -29.18 13.97 55.49 0.78 -28.40 16 15 Si 0.88 22.06 27.74 -169.99 -4.72 17.34 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.57 6.51 56.52 0.37 -6.21 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 C -0.09 -1.54 9.05 -39.61 -0.36 -1.90 16 20 C -0.13 -1.89 9.36 -39.36 -0.37 -2.26 16 21 H 0.08 0.67 7.75 -51.92 -0.40 0.27 16 22 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 23 H 0.08 0.72 7.75 -51.93 -0.40 0.32 16 24 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 25 H 0.13 1.64 8.03 -52.49 -0.42 1.22 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.36 8.38 3.90 -40.82 -0.16 8.22 16 30 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 31 H 0.12 2.07 6.89 -52.49 -0.36 1.71 16 32 H 0.12 1.45 5.88 -52.49 -0.31 1.14 16 LS Contribution 281.56 15.07 4.24 4.24 Total: -1.00 -31.06 281.56 -8.00 -39.06 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.17 Total: 6.32 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.44 Total: -16.72 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.51 Total: -46.24 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.72 Total: 17.34 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.43 Total: -4.00 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.06 -8.00 -39.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281534201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.862 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds