Wall clock time and date at job start Sun Mar 29 2020 21:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76202 * 102.99673 * 2 1 4 4 C 1.38979 * 120.07744 * 179.97438 * 3 2 1 5 5 C 1.38088 * 119.91874 * 179.97438 * 4 3 2 6 6 C 1.38304 * 120.07781 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.91694 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47420 * 340.00135 * 7 6 5 9 9 C 1.53006 * 109.46954 * 99.99944 * 7 6 5 10 10 N 1.46493 * 109.47479 * 219.99771 * 7 6 5 11 11 C 1.36936 * 120.00314 * 154.99980 * 10 7 6 12 12 H 1.08001 * 120.00159 * 0.02562 * 11 10 7 13 13 C 1.38811 * 119.99842 * 180.02562 * 11 10 7 14 14 N 1.31624 * 119.99540 * 179.72505 * 13 11 10 15 15 Si 1.86800 * 120.00451 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72270 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72118 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72153 * 15 13 11 19 19 C 1.38301 * 120.16227 * 0.27206 * 6 5 4 20 20 C 1.38090 * 120.08021 * 359.49162 * 19 6 5 21 21 H 1.09007 * 109.47338 * 60.00042 * 1 2 3 22 22 H 1.09003 * 109.46988 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47655 * 299.99988 * 1 2 3 24 24 H 1.07997 * 120.04123 * 359.95657 * 4 3 2 25 25 H 1.07993 * 119.95910 * 179.97438 * 5 4 3 26 26 H 1.08995 * 109.47185 * 59.99905 * 9 7 6 27 27 H 1.08997 * 109.47326 * 180.02562 * 9 7 6 28 28 H 1.09003 * 109.47067 * 300.00148 * 9 7 6 29 29 H 0.97000 * 120.00040 * 335.00112 * 10 7 6 30 30 H 0.96999 * 119.99889 * 180.27497 * 14 13 11 31 31 H 1.08002 * 119.95812 * 179.72762 * 19 6 5 32 32 H 1.07997 * 120.03895 * 180.27922 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 3.5387 2.1251 0.0005 5 6 3.8456 3.4714 0.0000 6 6 2.8327 4.4132 -0.0016 7 6 3.1717 5.8815 -0.0016 8 1 4.1939 6.0185 0.3512 9 6 3.0442 6.4344 -1.4226 10 7 2.2494 6.5957 0.8847 11 6 2.6274 7.7826 1.4534 12 1 3.6053 8.1926 1.2482 13 6 1.7537 8.4590 2.2936 14 7 2.1191 9.5971 2.8446 15 14 0.0625 7.7497 2.6492 16 1 -0.9084 8.2594 1.6478 17 1 0.1211 6.2679 2.5723 18 1 -0.3695 8.1580 4.0100 19 6 1.5096 4.0107 0.0030 20 6 1.1952 2.6660 -0.0014 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 4.3301 1.3902 0.0017 25 1 4.8776 3.7894 0.0008 26 1 2.0220 6.2974 -1.7754 27 1 3.2898 7.4963 -1.4227 28 1 3.7304 5.9030 -2.0821 29 1 1.3710 6.2277 1.0688 30 1 1.5101 10.0678 3.4349 31 1 0.7212 4.7489 0.0062 32 1 0.1617 2.3524 -0.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281534201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:34 Heat of formation + Delta-G solvation = 15.714032 kcal Electronic energy + Delta-G solvation = -14281.241465 eV Core-core repulsion = 11946.358785 eV Total energy + Delta-G solvation = -2334.882681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42295 -37.24482 -34.29016 -32.35327 -31.74252 -30.19300 -29.50115 -25.91617 -24.29424 -23.43549 -21.42717 -19.96294 -18.64053 -17.06363 -16.77784 -16.07378 -15.67408 -15.55166 -14.87616 -14.80984 -14.58775 -14.49812 -14.12618 -13.89659 -13.55565 -13.28786 -13.04923 -12.85126 -12.58462 -12.23163 -12.06546 -11.80407 -11.63570 -11.20150 -11.07635 -10.50554 -9.95113 -9.35870 -8.31703 -8.03280 -5.36456 0.20797 0.40174 0.59854 1.34086 1.37394 1.44471 1.47470 2.46423 2.69611 3.28878 3.59684 3.86539 3.87738 3.97399 4.25040 4.27942 4.42020 4.43968 4.58133 4.68336 4.80170 4.85810 4.94673 5.00484 5.14349 5.25408 5.31675 5.46612 5.68111 5.78743 5.92418 6.21287 7.06134 7.81620 8.01064 9.18255 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.031446 B = 0.006337 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.206588 B = 4417.413095 C = 4987.422733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.140 6.140 3 C -0.101 4.101 4 C -0.101 4.101 5 C -0.099 4.099 6 C -0.088 4.088 7 C 0.207 3.793 8 H 0.057 0.943 9 C -0.150 4.150 10 N -0.749 5.749 11 C -0.228 4.228 12 H 0.061 0.939 13 C -0.062 4.062 14 N -0.983 5.983 15 Si 0.947 3.053 16 H -0.276 1.276 17 H -0.255 1.255 18 H -0.295 1.295 19 C -0.108 4.108 20 C -0.133 4.133 21 H 0.091 0.909 22 H 0.128 0.872 23 H 0.087 0.913 24 H 0.145 0.855 25 H 0.144 0.856 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.364 0.636 30 H 0.257 0.743 31 H 0.116 0.884 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 -20.844 -8.369 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.101 5.899 3 C -0.213 4.213 4 C -0.124 4.124 5 C -0.119 4.119 6 C -0.091 4.091 7 C 0.099 3.901 8 H 0.075 0.925 9 C -0.210 4.210 10 N -0.394 5.394 11 C -0.358 4.358 12 H 0.079 0.921 13 C -0.253 4.253 14 N -0.634 5.634 15 Si 0.774 3.226 16 H -0.202 1.202 17 H -0.180 1.180 18 H -0.222 1.222 19 C -0.128 4.128 20 C -0.156 4.156 21 H 0.110 0.890 22 H 0.146 0.854 23 H 0.106 0.894 24 H 0.162 0.838 25 H 0.161 0.839 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.199 0.801 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.994 -21.738 -8.317 23.360 hybrid contribution -1.752 1.538 0.557 2.397 sum -3.746 -20.200 -7.761 21.962 Atomic orbital electron populations 1.23771 0.92125 1.08492 1.06312 1.85331 1.09486 1.02128 1.92914 1.21861 0.96844 0.97157 1.05436 1.20947 0.94756 0.95967 1.00708 1.21156 0.99676 0.92028 0.99052 1.20279 0.94045 0.95512 0.99267 1.19333 0.93583 0.86595 0.90576 0.92545 1.22239 1.01533 1.00495 0.96691 1.42890 1.16308 1.23760 1.56418 1.19049 0.99916 0.96442 1.20432 0.92111 1.25426 1.02321 0.97457 1.00119 1.69872 1.37953 1.18490 1.37056 0.85526 0.80831 0.79049 0.77168 1.20192 1.18003 1.22185 1.20939 0.96292 0.95797 0.99780 1.21290 0.99194 0.92368 1.02747 0.88977 0.85366 0.89439 0.83760 0.83854 0.93186 0.94019 0.91000 0.80116 0.93363 0.86587 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.15 113.37 1.04 -0.82 16 2 S -0.14 -2.82 22.56 -56.49 -1.27 -4.10 16 3 C -0.10 -2.54 6.11 22.62 0.14 -2.40 16 4 C -0.10 -2.53 9.79 22.41 0.22 -2.31 16 5 C -0.10 -2.75 9.66 22.25 0.21 -2.53 16 6 C -0.09 -2.87 4.96 -19.83 -0.10 -2.97 16 7 C 0.21 7.90 3.09 44.25 0.14 8.04 16 8 H 0.06 2.23 7.94 -2.39 -0.02 2.21 16 9 C -0.15 -5.13 9.47 71.98 0.68 -4.45 16 10 N -0.75 -35.24 4.87 -326.51 -1.59 -36.83 16 11 C -0.23 -12.99 10.41 84.03 0.87 -12.12 16 12 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 13 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 14 N -0.98 -63.33 13.97 21.65 0.30 -63.02 16 15 Si 0.95 45.76 27.74 68.60 1.90 47.66 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 17 H -0.26 -11.27 6.51 99.48 0.65 -10.62 16 18 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 19 C -0.11 -3.37 9.05 22.25 0.20 -3.17 16 20 C -0.13 -3.49 9.36 22.41 0.21 -3.28 16 21 H 0.09 1.12 7.75 -2.39 -0.02 1.11 16 22 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.09 1.17 7.75 -2.39 -0.02 1.15 16 24 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 25 H 0.14 3.41 8.03 -2.91 -0.02 3.38 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.36 16.54 3.90 -92.71 -0.36 16.18 16 30 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.12 3.72 6.89 -2.91 -0.02 3.70 16 32 H 0.14 2.97 5.88 -2.91 -0.02 2.95 16 Total: -1.00 -67.43 281.56 4.11 -63.32 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.69 Total: 22.19 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 4.08 Total: -29.22 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -1.29 Total: -99.86 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.90 Total: 47.66 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -1.27 Total: -4.10 kcal Total: -67.43 4.11 -63.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281534201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.033 kcal (2) G-P(sol) polarization free energy of solvation -67.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds