Wall clock time and date at job start Sun Mar 29 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47679 * 49.91256 * 3 2 1 5 5 C 1.37099 * 119.99733 * 263.85669 * 4 3 2 6 6 H 1.07997 * 119.99292 * 201.13928 * 5 4 3 7 7 C 1.38950 * 120.00157 * 21.13410 * 5 4 3 8 8 N 1.31417 * 119.99941 * 10.72831 * 7 5 4 9 9 Si 1.86800 * 119.99854 * 190.72335 * 7 5 4 10 10 H 1.48494 * 109.46977 * 90.00622 * 9 7 5 11 11 H 1.48499 * 109.46854 * 210.00522 * 9 7 5 12 12 H 1.48500 * 109.47166 * 330.00343 * 9 7 5 13 13 C 1.34770 * 119.99786 * 83.85031 * 4 3 2 14 14 O 1.21296 * 119.99615 * 185.13703 * 13 4 3 15 15 C 1.50702 * 120.00431 * 5.14075 * 13 4 3 16 16 C 1.53179 * 109.54277 * 207.97819 * 15 13 4 17 17 C 1.53091 * 109.16094 * 183.15393 * 16 15 13 18 18 O 1.42897 * 109.41877 * 57.60728 * 17 16 15 19 19 C 1.42904 * 114.09969 * 298.84579 * 18 17 16 20 20 C 1.53091 * 109.41800 * 61.15252 * 19 18 17 21 21 H 4.40647 * 5.51479 * 180.02562 * 4 1 2 22 22 H 1.09001 * 109.46893 * 289.90864 * 3 2 1 23 23 H 1.09000 * 109.46628 * 169.91436 * 3 2 1 24 24 H 0.96998 * 119.99294 * 179.97438 * 8 7 5 25 25 H 1.08998 * 109.61255 * 328.20058 * 15 13 4 26 26 H 1.08998 * 109.52487 * 303.05951 * 16 15 13 27 27 H 1.09004 * 109.52246 * 63.24798 * 16 15 13 28 28 H 1.09003 * 109.47924 * 297.62683 * 17 16 15 29 29 H 1.08997 * 109.48310 * 177.59348 * 17 16 15 30 30 H 1.09002 * 109.48171 * 301.17446 * 19 18 17 31 31 H 1.08998 * 109.49290 * 181.14140 * 19 18 17 32 32 H 1.08997 * 109.52906 * 182.48567 * 20 19 18 33 33 H 1.09000 * 109.52191 * 62.29551 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8885 -1.0567 5 6 3.4838 -2.1804 -0.7584 6 1 4.1453 -2.7262 -1.4148 7 6 2.9864 -2.7873 0.3883 8 7 2.0245 -2.2101 1.0728 9 14 3.6850 -4.4239 0.9568 10 1 4.8239 -4.1825 1.8785 11 1 2.6301 -5.1934 1.6641 12 1 4.1561 -5.1967 -0.2205 13 6 3.2414 -0.4366 -2.3218 14 8 3.5566 -1.1969 -3.2129 15 6 2.9691 1.0133 -2.6296 16 6 2.4732 1.1465 -4.0728 17 6 2.2747 2.6285 -4.4012 18 8 3.5043 3.3284 -4.2008 19 6 3.9921 3.2784 -2.8585 20 6 4.2597 1.8226 -2.4681 21 1 -1.0499 -0.0001 -0.0004 22 1 3.0094 -0.3491 0.9663 23 1 3.0088 1.0126 -0.1800 24 1 1.6771 -2.6341 1.8730 25 1 2.2108 1.3962 -1.9467 26 1 3.2103 0.7184 -4.7522 27 1 1.5257 0.6189 -4.1825 28 1 1.5082 3.0460 -3.7482 29 1 1.9627 2.7319 -5.4404 30 1 3.2481 3.7044 -2.1853 31 1 4.9173 3.8501 -2.7863 32 1 4.5898 1.7784 -1.4302 33 1 5.0328 1.4081 -3.1151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281595108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:15 Heat of formation + Delta-G solvation = -21.452693 kcal Electronic energy + Delta-G solvation = -17343.816471 eV Core-core repulsion = 14564.569250 eV Total energy + Delta-G solvation = -2779.247222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.63237 -37.96288 -35.21793 -33.23182 -31.92612 -31.23693 -30.80540 -26.64952 -25.80952 -24.00152 -23.26474 -20.60174 -18.70766 -17.86138 -16.74882 -16.25207 -15.79405 -15.78008 -14.70497 -14.57929 -14.17084 -13.98484 -13.38639 -13.18131 -12.55758 -12.28910 -12.26051 -11.95438 -11.45153 -11.13232 -11.05540 -10.87695 -10.53402 -10.43022 -10.26039 -10.08632 -9.51952 -9.38388 -9.29058 -8.85178 -8.32527 -7.85374 -6.30244 -3.91736 3.14140 3.23829 3.28720 3.65163 3.88106 4.03977 4.06806 4.17118 4.81317 5.00315 5.12562 5.16980 5.26325 5.42290 5.46269 5.48845 5.64856 5.73407 5.84179 5.96172 6.05579 6.18320 6.21489 6.39908 6.51304 6.69076 6.81787 7.05412 7.34999 7.53452 8.05758 8.42840 8.80333 9.13045 9.34592 9.90326 10.69084 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034101 B = 0.007741 C = 0.007077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.891576 B = 3616.169673 C = 3955.774551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.107 4.107 3 C 0.231 3.769 4 N -0.443 5.443 5 C -0.308 4.308 6 H 0.101 0.899 7 C 0.028 3.972 8 N -0.874 5.874 9 Si 0.927 3.073 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.460 3.540 14 O -0.581 6.581 15 C -0.104 4.104 16 C -0.134 4.134 17 C 0.063 3.937 18 O -0.387 6.387 19 C 0.064 3.936 20 C -0.143 4.143 21 H 0.198 0.802 22 H 0.116 0.884 23 H 0.058 0.942 24 H 0.268 0.732 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 9.662 -1.750 9.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.109 4.109 3 C 0.108 3.892 4 N -0.161 5.161 5 C -0.436 4.436 6 H 0.119 0.881 7 C -0.175 4.175 8 N -0.513 5.513 9 Si 0.754 3.246 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.248 3.752 14 O -0.465 6.465 15 C -0.126 4.126 16 C -0.172 4.172 17 C -0.014 4.014 18 O -0.305 6.305 19 C -0.013 4.013 20 C -0.181 4.181 21 H 0.216 0.784 22 H 0.134 0.866 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.260 9.296 -2.145 9.543 hybrid contribution -0.359 -1.143 0.848 1.468 sum -0.098 8.153 -1.296 8.256 Atomic orbital electron populations 1.24265 0.95389 1.05467 1.03607 1.23228 0.94398 0.95817 0.97451 1.18333 0.84162 0.91603 0.95079 1.43679 1.56158 1.11312 1.04977 1.19694 1.26718 0.89021 1.08133 0.88133 1.25354 0.95250 0.99458 0.97415 1.69973 1.24063 1.39357 1.17881 0.85902 0.78315 0.81503 0.78861 1.20358 1.21002 1.19467 1.19992 0.83474 0.88998 0.82706 1.90513 1.52659 1.58213 1.45082 1.21246 0.98149 0.95205 0.97964 1.21974 1.02729 0.96185 0.96313 1.22610 0.85950 0.91494 1.01350 1.87876 1.39999 1.74035 1.28638 1.22574 0.99134 0.95898 0.83679 1.22130 0.97872 0.95454 1.02683 0.78449 0.86598 0.92451 0.92136 0.90014 0.90013 0.91007 0.93411 0.89030 0.93249 0.88974 0.90578 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.58 19.25 29.55 0.57 -5.01 16 2 C -0.11 -2.41 10.77 -37.12 -0.40 -2.81 16 3 C 0.23 5.10 4.77 -6.83 -0.03 5.07 16 4 N -0.44 -11.15 2.60 -117.93 -0.31 -11.46 16 5 C -0.31 -8.46 9.30 -14.93 -0.14 -8.60 16 6 H 0.10 2.90 7.43 -52.49 -0.39 2.51 16 7 C 0.03 0.74 5.11 -17.47 -0.09 0.65 16 8 N -0.87 -22.82 9.04 55.50 0.50 -22.32 16 9 Si 0.93 20.63 29.57 -169.99 -5.03 15.61 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.46 11.16 6.64 -10.99 -0.07 11.08 16 14 O -0.58 -16.19 15.80 5.54 0.09 -16.10 16 15 C -0.10 -1.94 1.78 -91.59 -0.16 -2.10 16 16 C -0.13 -2.30 5.05 -26.59 -0.13 -2.43 16 17 C 0.06 0.87 6.84 37.20 0.25 1.13 16 18 O -0.39 -5.79 10.77 -35.23 -0.38 -6.17 16 19 C 0.06 0.85 6.84 37.20 0.25 1.10 16 20 C -0.14 -2.27 5.29 -26.59 -0.14 -2.41 16 21 H 0.20 3.35 7.80 -54.10 -0.42 2.93 16 22 H 0.12 2.71 6.35 -51.93 -0.33 2.38 16 23 H 0.06 1.06 5.85 -51.93 -0.30 0.75 16 24 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.08 1.48 6.05 -51.93 -0.31 1.16 16 26 H 0.08 1.54 7.76 -51.93 -0.40 1.13 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.13 7.38 -51.93 -0.38 0.75 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 276.51 15.07 4.17 4.17 Total: -1.00 -31.23 276.51 -5.27 -36.50 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.22 Total: 4.13 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.09 Total: -4.35 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.19 Total: -33.78 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.29 Total: -22.27 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.23 -5.27 -36.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281595108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.042 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds