Wall clock time and date at job start Sun Mar 29 2020 22:40:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17395 * 1
3 3 C 1.47203 * 179.97438 * 2 1
4 4 N 1.46498 * 109.47679 * 49.91256 * 3 2 1
5 5 C 1.37099 * 119.99733 * 263.85669 * 4 3 2
6 6 H 1.07997 * 119.99292 * 201.13928 * 5 4 3
7 7 C 1.38950 * 120.00157 * 21.13410 * 5 4 3
8 8 N 1.31417 * 119.99941 * 10.72831 * 7 5 4
9 9 Si 1.86800 * 119.99854 * 190.72335 * 7 5 4
10 10 H 1.48494 * 109.46977 * 90.00622 * 9 7 5
11 11 H 1.48499 * 109.46854 * 210.00522 * 9 7 5
12 12 H 1.48500 * 109.47166 * 330.00343 * 9 7 5
13 13 C 1.34770 * 119.99786 * 83.85031 * 4 3 2
14 14 O 1.21296 * 119.99615 * 185.13703 * 13 4 3
15 15 C 1.50702 * 120.00431 * 5.14075 * 13 4 3
16 16 C 1.53179 * 109.54277 * 207.97819 * 15 13 4
17 17 C 1.53091 * 109.16094 * 183.15393 * 16 15 13
18 18 O 1.42897 * 109.41877 * 57.60728 * 17 16 15
19 19 C 1.42904 * 114.09969 * 298.84579 * 18 17 16
20 20 C 1.53091 * 109.41800 * 61.15252 * 19 18 17
21 21 H 4.40647 * 5.51479 * 180.02562 * 4 1 2
22 22 H 1.09001 * 109.46893 * 289.90864 * 3 2 1
23 23 H 1.09000 * 109.46628 * 169.91436 * 3 2 1
24 24 H 0.96998 * 119.99294 * 179.97438 * 8 7 5
25 25 H 1.08998 * 109.61255 * 328.20058 * 15 13 4
26 26 H 1.08998 * 109.52487 * 303.05951 * 16 15 13
27 27 H 1.09004 * 109.52246 * 63.24798 * 16 15 13
28 28 H 1.09003 * 109.47924 * 297.62683 * 17 16 15
29 29 H 1.08997 * 109.48310 * 177.59348 * 17 16 15
30 30 H 1.09002 * 109.48171 * 301.17446 * 19 18 17
31 31 H 1.08998 * 109.49290 * 181.14140 * 19 18 17
32 32 H 1.08997 * 109.52906 * 182.48567 * 20 19 18
33 33 H 1.09000 * 109.52191 * 62.29551 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1348 -0.8885 -1.0567
5 6 3.4838 -2.1804 -0.7584
6 1 4.1453 -2.7262 -1.4148
7 6 2.9864 -2.7873 0.3883
8 7 2.0245 -2.2101 1.0728
9 14 3.6850 -4.4239 0.9568
10 1 4.8239 -4.1825 1.8785
11 1 2.6301 -5.1934 1.6641
12 1 4.1561 -5.1967 -0.2205
13 6 3.2414 -0.4366 -2.3218
14 8 3.5566 -1.1969 -3.2129
15 6 2.9691 1.0133 -2.6296
16 6 2.4732 1.1465 -4.0728
17 6 2.2747 2.6285 -4.4012
18 8 3.5043 3.3284 -4.2008
19 6 3.9921 3.2784 -2.8585
20 6 4.2597 1.8226 -2.4681
21 1 -1.0499 -0.0001 -0.0004
22 1 3.0094 -0.3491 0.9663
23 1 3.0088 1.0126 -0.1800
24 1 1.6771 -2.6341 1.8730
25 1 2.2108 1.3962 -1.9467
26 1 3.2103 0.7184 -4.7522
27 1 1.5257 0.6189 -4.1825
28 1 1.5082 3.0460 -3.7482
29 1 1.9627 2.7319 -5.4404
30 1 3.2481 3.7044 -2.1853
31 1 4.9173 3.8501 -2.7863
32 1 4.5898 1.7784 -1.4302
33 1 5.0328 1.4081 -3.1151
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000281595108.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:40:15
Heat of formation + Delta-G solvation = -41.607407 kcal
Electronic energy + Delta-G solvation = -17344.690445 eV
Core-core repulsion = 14564.569250 eV
Total energy + Delta-G solvation = -2780.121196 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 237.115 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.19405 -39.45019 -37.13430 -34.74724 -33.72206 -33.04411 -32.02260 -28.45160
-27.42291 -25.67947 -24.47206 -22.06255 -20.33118 -19.68483 -18.52193 -18.02722
-17.16321 -16.90996 -16.51472 -15.94421 -15.86763 -15.57626 -14.93679 -14.56495
-14.26301 -14.05050 -13.88422 -13.38916 -13.20143 -12.83499 -12.54593 -12.41508
-12.20444 -12.18548 -11.63202 -11.39705 -11.26696 -11.07858 -10.70926 -10.60406
-10.15053 -9.82410 -8.29591 -5.99582 1.35193 1.39847 1.50880 1.86111
2.11235 2.31760 2.38090 2.97037 3.05334 3.15465 3.76690 3.84044
3.88358 3.93419 4.07272 4.31644 4.34600 4.55538 4.61610 4.69055
4.72387 4.79152 4.88496 5.03336 5.10063 5.17101 5.31017 5.42183
5.43768 6.05746 6.27206 6.44508 7.12202 7.13938 7.40380 7.96873
8.66511
Molecular weight = 237.12amu
Principal moments of inertia in cm(-1)
A = 0.034101 B = 0.007741 C = 0.007077
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 820.891576 B = 3616.169673 C = 3955.774551
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.251 4.251
2 C -0.151 4.151
3 C 0.235 3.765
4 N -0.453 5.453
5 C -0.347 4.347
6 H 0.071 0.929
7 C 0.000 4.000
8 N -0.879 5.879
9 Si 0.988 3.012
10 H -0.263 1.263
11 H -0.276 1.276
12 H -0.281 1.281
13 C 0.447 3.553
14 O -0.632 6.632
15 C -0.095 4.095
16 C -0.133 4.133
17 C 0.070 3.930
18 O -0.398 6.398
19 C 0.067 3.933
20 C -0.140 4.140
21 H 0.233 0.767
22 H 0.099 0.901
23 H 0.093 0.907
24 H 0.272 0.728
25 H 0.094 0.906
26 H 0.055 0.945
27 H 0.063 0.937
28 H 0.069 0.931
29 H 0.113 0.887
30 H 0.072 0.928
31 H 0.118 0.882
32 H 0.085 0.915
33 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.780 11.310 -0.874 11.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.269 4.269
2 C -0.152 4.152
3 C 0.112 3.888
4 N -0.171 5.171
5 C -0.474 4.474
6 H 0.089 0.911
7 C -0.203 4.203
8 N -0.517 5.517
9 Si 0.812 3.188
10 H -0.188 1.188
11 H -0.201 1.201
12 H -0.206 1.206
13 C 0.238 3.762
14 O -0.519 6.519
15 C -0.117 4.117
16 C -0.171 4.171
17 C -0.006 4.006
18 O -0.317 6.317
19 C -0.009 4.009
20 C -0.178 4.178
21 H 0.249 0.751
22 H 0.116 0.884
23 H 0.111 0.889
24 H 0.082 0.918
25 H 0.112 0.888
26 H 0.074 0.926
27 H 0.082 0.918
28 H 0.087 0.913
29 H 0.131 0.869
30 H 0.090 0.910
31 H 0.136 0.864
32 H 0.104 0.896
33 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -0.612 10.980 -1.237 11.066
hybrid contribution -0.141 -1.690 0.590 1.796
sum -0.752 9.290 -0.647 9.343
Atomic orbital electron populations
1.25147 0.96370 1.03667 1.01724 1.23500 0.95053 0.97491 0.99173
1.18365 0.84520 0.92578 0.93292 1.43901 1.55986 1.11093 1.06119
1.19600 1.28130 0.90718 1.08993 0.91099 1.26022 0.95205 1.02298
0.96742 1.70084 1.23835 1.40119 1.17657 0.85013 0.78184 0.77542
0.78054 1.18777 1.20126 1.20619 1.21028 0.82119 0.91193 0.81905
1.90466 1.54760 1.60175 1.46476 1.21231 0.99970 0.91429 0.99044
1.21981 1.01389 0.98938 0.94828 1.22653 0.86212 0.88557 1.03224
1.87876 1.40432 1.73725 1.29685 1.22719 1.01099 0.93766 0.83337
1.22150 0.95673 0.97049 1.02964 0.75054 0.88352 0.88890 0.91827
0.88798 0.92572 0.91826 0.91302 0.86909 0.91022 0.86384 0.89633
0.92583
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.25 -9.85 19.25 74.32 1.43 -8.41 16
2 C -0.15 -6.58 10.77 31.13 0.34 -6.25 16
3 C 0.23 10.27 4.77 84.57 0.40 10.68 16
4 N -0.45 -23.36 2.60 -645.42 -1.68 -25.04 16
5 C -0.35 -19.72 9.30 84.04 0.78 -18.94 16
6 H 0.07 4.35 7.43 -2.91 -0.02 4.33 16
7 C 0.00 -0.01 5.11 84.93 0.43 0.42 16
8 N -0.88 -45.61 9.04 21.66 0.20 -45.42 16
9 Si 0.99 42.56 29.57 68.60 2.03 44.59 16
10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16
11 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16
12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
13 C 0.45 22.34 6.64 87.66 0.58 22.93 16
14 O -0.63 -37.08 15.80 -3.08 -0.05 -37.12 16
15 C -0.10 -3.51 1.78 -11.42 -0.02 -3.53 16
16 C -0.13 -4.53 5.05 30.68 0.16 -4.37 16
17 C 0.07 1.76 6.84 72.01 0.49 2.26 16
18 O -0.40 -10.77 10.77 -148.98 -1.60 -12.38 16
19 C 0.07 1.56 6.84 72.01 0.49 2.05 16
20 C -0.14 -4.27 5.29 30.68 0.16 -4.11 16
21 H 0.23 7.03 7.80 -4.42 -0.03 6.99 16
22 H 0.10 4.61 6.35 -2.39 -0.02 4.60 16
23 H 0.09 3.29 5.85 -2.39 -0.01 3.28 16
24 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16
25 H 0.09 3.22 6.05 -2.39 -0.01 3.21 16
26 H 0.06 2.17 7.76 -2.39 -0.02 2.16 16
27 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16
28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16
29 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16
30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
31 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16
32 H 0.09 2.42 7.38 -2.39 -0.02 2.40 16
33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
Total: -1.00 -69.43 276.51 5.24 -64.19
By element:
Atomic # 1 Polarization: 17.36 SS G_CDS: 1.10 Total: 18.46 kcal
Atomic # 6 Polarization: -12.53 SS G_CDS: 5.25 Total: -7.28 kcal
Atomic # 7 Polarization: -68.98 SS G_CDS: -1.48 Total: -70.46 kcal
Atomic # 8 Polarization: -47.85 SS G_CDS: -1.65 Total: -49.50 kcal
Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal
Total: -69.43 5.24 -64.19 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281595108.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.587 kcal
(2) G-P(sol) polarization free energy of solvation -69.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.847 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.607 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds