Wall clock time and date at job start Sun Mar 29 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47679 * 49.91256 * 3 2 1 5 5 C 1.37099 * 119.99733 * 263.85669 * 4 3 2 6 6 H 1.07997 * 119.99292 * 201.13928 * 5 4 3 7 7 C 1.38950 * 120.00157 * 21.13410 * 5 4 3 8 8 N 1.31417 * 119.99941 * 10.72831 * 7 5 4 9 9 Si 1.86800 * 119.99854 * 190.72335 * 7 5 4 10 10 H 1.48494 * 109.46977 * 90.00622 * 9 7 5 11 11 H 1.48499 * 109.46854 * 210.00522 * 9 7 5 12 12 H 1.48500 * 109.47166 * 330.00343 * 9 7 5 13 13 C 1.34770 * 119.99786 * 83.85031 * 4 3 2 14 14 O 1.21296 * 119.99615 * 185.13703 * 13 4 3 15 15 C 1.50702 * 120.00431 * 5.14075 * 13 4 3 16 16 C 1.53179 * 109.54277 * 207.97819 * 15 13 4 17 17 C 1.53091 * 109.16094 * 183.15393 * 16 15 13 18 18 O 1.42897 * 109.41877 * 57.60728 * 17 16 15 19 19 C 1.42904 * 114.09969 * 298.84579 * 18 17 16 20 20 C 1.53091 * 109.41800 * 61.15252 * 19 18 17 21 21 H 4.40647 * 5.51479 * 180.02562 * 4 1 2 22 22 H 1.09001 * 109.46893 * 289.90864 * 3 2 1 23 23 H 1.09000 * 109.46628 * 169.91436 * 3 2 1 24 24 H 0.96998 * 119.99294 * 179.97438 * 8 7 5 25 25 H 1.08998 * 109.61255 * 328.20058 * 15 13 4 26 26 H 1.08998 * 109.52487 * 303.05951 * 16 15 13 27 27 H 1.09004 * 109.52246 * 63.24798 * 16 15 13 28 28 H 1.09003 * 109.47924 * 297.62683 * 17 16 15 29 29 H 1.08997 * 109.48310 * 177.59348 * 17 16 15 30 30 H 1.09002 * 109.48171 * 301.17446 * 19 18 17 31 31 H 1.08998 * 109.49290 * 181.14140 * 19 18 17 32 32 H 1.08997 * 109.52906 * 182.48567 * 20 19 18 33 33 H 1.09000 * 109.52191 * 62.29551 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8885 -1.0567 5 6 3.4838 -2.1804 -0.7584 6 1 4.1453 -2.7262 -1.4148 7 6 2.9864 -2.7873 0.3883 8 7 2.0245 -2.2101 1.0728 9 14 3.6850 -4.4239 0.9568 10 1 4.8239 -4.1825 1.8785 11 1 2.6301 -5.1934 1.6641 12 1 4.1561 -5.1967 -0.2205 13 6 3.2414 -0.4366 -2.3218 14 8 3.5566 -1.1969 -3.2129 15 6 2.9691 1.0133 -2.6296 16 6 2.4732 1.1465 -4.0728 17 6 2.2747 2.6285 -4.4012 18 8 3.5043 3.3284 -4.2008 19 6 3.9921 3.2784 -2.8585 20 6 4.2597 1.8226 -2.4681 21 1 -1.0499 -0.0001 -0.0004 22 1 3.0094 -0.3491 0.9663 23 1 3.0088 1.0126 -0.1800 24 1 1.6771 -2.6341 1.8730 25 1 2.2108 1.3962 -1.9467 26 1 3.2103 0.7184 -4.7522 27 1 1.5257 0.6189 -4.1825 28 1 1.5082 3.0460 -3.7482 29 1 1.9627 2.7319 -5.4404 30 1 3.2481 3.7044 -2.1853 31 1 4.9173 3.8501 -2.7863 32 1 4.5898 1.7784 -1.4302 33 1 5.0328 1.4081 -3.1151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281595108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:15 Heat of formation + Delta-G solvation = -41.607407 kcal Electronic energy + Delta-G solvation = -17344.690445 eV Core-core repulsion = 14564.569250 eV Total energy + Delta-G solvation = -2780.121196 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19405 -39.45019 -37.13430 -34.74724 -33.72206 -33.04411 -32.02260 -28.45160 -27.42291 -25.67947 -24.47206 -22.06255 -20.33118 -19.68483 -18.52193 -18.02722 -17.16321 -16.90996 -16.51472 -15.94421 -15.86763 -15.57626 -14.93679 -14.56495 -14.26301 -14.05050 -13.88422 -13.38916 -13.20143 -12.83499 -12.54593 -12.41508 -12.20444 -12.18548 -11.63202 -11.39705 -11.26696 -11.07858 -10.70926 -10.60406 -10.15053 -9.82410 -8.29591 -5.99582 1.35193 1.39847 1.50880 1.86111 2.11235 2.31760 2.38090 2.97037 3.05334 3.15465 3.76690 3.84044 3.88358 3.93419 4.07272 4.31644 4.34600 4.55538 4.61610 4.69055 4.72387 4.79152 4.88496 5.03336 5.10063 5.17101 5.31017 5.42183 5.43768 6.05746 6.27206 6.44508 7.12202 7.13938 7.40380 7.96873 8.66511 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034101 B = 0.007741 C = 0.007077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.891576 B = 3616.169673 C = 3955.774551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.151 4.151 3 C 0.235 3.765 4 N -0.453 5.453 5 C -0.347 4.347 6 H 0.071 0.929 7 C 0.000 4.000 8 N -0.879 5.879 9 Si 0.988 3.012 10 H -0.263 1.263 11 H -0.276 1.276 12 H -0.281 1.281 13 C 0.447 3.553 14 O -0.632 6.632 15 C -0.095 4.095 16 C -0.133 4.133 17 C 0.070 3.930 18 O -0.398 6.398 19 C 0.067 3.933 20 C -0.140 4.140 21 H 0.233 0.767 22 H 0.099 0.901 23 H 0.093 0.907 24 H 0.272 0.728 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 11.310 -0.874 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.152 4.152 3 C 0.112 3.888 4 N -0.171 5.171 5 C -0.474 4.474 6 H 0.089 0.911 7 C -0.203 4.203 8 N -0.517 5.517 9 Si 0.812 3.188 10 H -0.188 1.188 11 H -0.201 1.201 12 H -0.206 1.206 13 C 0.238 3.762 14 O -0.519 6.519 15 C -0.117 4.117 16 C -0.171 4.171 17 C -0.006 4.006 18 O -0.317 6.317 19 C -0.009 4.009 20 C -0.178 4.178 21 H 0.249 0.751 22 H 0.116 0.884 23 H 0.111 0.889 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.131 0.869 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.612 10.980 -1.237 11.066 hybrid contribution -0.141 -1.690 0.590 1.796 sum -0.752 9.290 -0.647 9.343 Atomic orbital electron populations 1.25147 0.96370 1.03667 1.01724 1.23500 0.95053 0.97491 0.99173 1.18365 0.84520 0.92578 0.93292 1.43901 1.55986 1.11093 1.06119 1.19600 1.28130 0.90718 1.08993 0.91099 1.26022 0.95205 1.02298 0.96742 1.70084 1.23835 1.40119 1.17657 0.85013 0.78184 0.77542 0.78054 1.18777 1.20126 1.20619 1.21028 0.82119 0.91193 0.81905 1.90466 1.54760 1.60175 1.46476 1.21231 0.99970 0.91429 0.99044 1.21981 1.01389 0.98938 0.94828 1.22653 0.86212 0.88557 1.03224 1.87876 1.40432 1.73725 1.29685 1.22719 1.01099 0.93766 0.83337 1.22150 0.95673 0.97049 1.02964 0.75054 0.88352 0.88890 0.91827 0.88798 0.92572 0.91826 0.91302 0.86909 0.91022 0.86384 0.89633 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.85 19.25 74.32 1.43 -8.41 16 2 C -0.15 -6.58 10.77 31.13 0.34 -6.25 16 3 C 0.23 10.27 4.77 84.57 0.40 10.68 16 4 N -0.45 -23.36 2.60 -645.42 -1.68 -25.04 16 5 C -0.35 -19.72 9.30 84.04 0.78 -18.94 16 6 H 0.07 4.35 7.43 -2.91 -0.02 4.33 16 7 C 0.00 -0.01 5.11 84.93 0.43 0.42 16 8 N -0.88 -45.61 9.04 21.66 0.20 -45.42 16 9 Si 0.99 42.56 29.57 68.60 2.03 44.59 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.45 22.34 6.64 87.66 0.58 22.93 16 14 O -0.63 -37.08 15.80 -3.08 -0.05 -37.12 16 15 C -0.10 -3.51 1.78 -11.42 -0.02 -3.53 16 16 C -0.13 -4.53 5.05 30.68 0.16 -4.37 16 17 C 0.07 1.76 6.84 72.01 0.49 2.26 16 18 O -0.40 -10.77 10.77 -148.98 -1.60 -12.38 16 19 C 0.07 1.56 6.84 72.01 0.49 2.05 16 20 C -0.14 -4.27 5.29 30.68 0.16 -4.11 16 21 H 0.23 7.03 7.80 -4.42 -0.03 6.99 16 22 H 0.10 4.61 6.35 -2.39 -0.02 4.60 16 23 H 0.09 3.29 5.85 -2.39 -0.01 3.28 16 24 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 25 H 0.09 3.22 6.05 -2.39 -0.01 3.21 16 26 H 0.06 2.17 7.76 -2.39 -0.02 2.16 16 27 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 2.42 7.38 -2.39 -0.02 2.40 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -69.43 276.51 5.24 -64.19 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.10 Total: 18.46 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 5.25 Total: -7.28 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -1.48 Total: -70.46 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -1.65 Total: -49.50 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -69.43 5.24 -64.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281595108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.587 kcal (2) G-P(sol) polarization free energy of solvation -69.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds