Wall clock time and date at job start Sun Mar 29 2020 21:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76193 * 102.99906 * 2 1 4 4 C 1.39000 * 120.08238 * 0.02562 * 3 2 1 5 5 C 1.38056 * 119.92065 * 179.97438 * 4 3 2 6 6 C 1.38328 * 120.08055 * 359.97438 * 5 4 3 7 7 C 1.38280 * 120.15835 * 359.74576 * 6 5 4 8 8 C 1.38103 * 120.08288 * 0.51267 * 7 6 5 9 9 C 1.50694 * 120.04218 * 179.77003 * 8 7 6 10 10 H 1.09000 * 109.47159 * 216.05603 * 9 8 7 11 11 C 1.53002 * 109.47554 * 96.05377 * 9 8 7 12 12 N 1.46499 * 109.47307 * 336.05106 * 9 8 7 13 13 C 1.36940 * 120.00245 * 276.35307 * 12 9 8 14 14 H 1.08002 * 119.99772 * 359.97438 * 13 12 9 15 15 C 1.38809 * 119.99895 * 180.02562 * 13 12 9 16 16 N 1.31616 * 120.00405 * 359.71526 * 15 13 12 17 17 Si 1.86802 * 119.99597 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47253 * 269.72178 * 17 15 13 19 19 H 1.48500 * 109.47321 * 29.72467 * 17 15 13 20 20 H 1.48506 * 109.46920 * 149.72335 * 17 15 13 21 21 H 1.08994 * 109.47629 * 300.00475 * 1 2 3 22 22 H 1.09007 * 109.46858 * 60.00362 * 1 2 3 23 23 H 1.09001 * 109.47437 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.03941 * 359.95605 * 4 3 2 25 25 H 1.08000 * 119.96163 * 179.97438 * 5 4 3 26 26 H 1.07999 * 119.91872 * 180.02562 * 6 5 4 27 27 H 1.07999 * 119.95827 * 180.25820 * 7 6 5 28 28 H 1.08992 * 109.47231 * 179.97438 * 11 9 8 29 29 H 1.09007 * 109.46807 * 300.00041 * 11 9 8 30 30 H 1.09004 * 109.47166 * 59.99654 * 11 9 8 31 31 H 0.97004 * 120.00017 * 96.34741 * 12 9 8 32 32 H 0.97005 * 119.99621 * 0.28340 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0105 0.0011 6 6 2.8329 4.4131 0.0016 7 6 3.8455 3.4714 0.0069 8 6 3.5386 2.1249 0.0010 9 6 4.6429 1.0995 0.0016 10 1 4.3461 0.2456 -0.6074 11 6 4.9077 0.6358 1.4354 12 7 5.8618 1.6941 -0.5524 13 6 6.0466 1.7388 -1.9085 14 1 5.2940 1.3353 -2.5697 15 6 7.2018 2.3017 -2.4333 16 7 8.1170 2.7976 -1.6278 17 14 7.4543 2.3620 -4.2832 18 1 8.1567 1.1314 -4.7274 19 1 6.1355 2.4509 -4.9602 20 1 8.2713 3.5518 -4.6328 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 0.1617 2.3526 0.0002 25 1 0.7212 4.7487 0.0011 26 1 3.0758 5.4654 0.0024 27 1 4.8776 3.7893 0.0115 28 1 5.7061 -0.1061 1.4357 29 1 5.2046 1.4898 2.0444 30 1 4.0008 0.1934 1.8476 31 1 6.5379 2.0563 0.0414 32 1 7.9860 2.7660 -0.6671 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281608177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:37 Heat of formation + Delta-G solvation = 32.289737 kcal Electronic energy + Delta-G solvation = -14639.137926 eV Core-core repulsion = 12304.974022 eV Total energy + Delta-G solvation = -2334.163904 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.91216 -35.57503 -32.54244 -30.90947 -29.53281 -28.73871 -28.05196 -23.58509 -22.90821 -22.25212 -19.98101 -17.36271 -17.23142 -15.82494 -15.09127 -14.64943 -14.14632 -13.84796 -13.79198 -13.65827 -13.32660 -13.19687 -12.65198 -12.33980 -11.83878 -11.59809 -11.07049 -10.88758 -10.78876 -10.66008 -10.31441 -9.98801 -9.89114 -9.33999 -9.17880 -8.95085 -8.27521 -7.10438 -7.06098 -6.08718 -3.09816 1.63865 1.75273 1.84074 2.65558 3.54002 3.58487 3.72402 4.15560 4.68574 5.04395 5.05068 5.14756 5.21018 5.44871 5.56501 5.62090 5.66403 5.79320 5.92043 5.95219 6.04075 6.24120 6.32309 6.49662 6.57649 6.69516 6.73610 6.94807 7.22051 7.40499 7.86725 8.76993 9.21748 10.08173 10.22867 11.39386 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.025762 B = 0.007741 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.611778 B = 3616.234171 C = 3825.045580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.113 6.113 3 C -0.093 4.093 4 C -0.141 4.141 5 C -0.120 4.120 6 C -0.129 4.129 7 C -0.070 4.070 8 C -0.059 4.059 9 C 0.207 3.793 10 H 0.066 0.934 11 C -0.150 4.150 12 N -0.728 5.728 13 C -0.327 4.327 14 H 0.065 0.935 15 C -0.043 4.043 16 N -0.945 5.945 17 Si 1.080 2.920 18 H -0.295 1.295 19 H -0.295 1.295 20 H -0.288 1.288 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.368 0.632 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.717 -2.009 5.391 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.129 5.871 3 C -0.206 4.206 4 C -0.165 4.165 5 C -0.140 4.140 6 C -0.150 4.150 7 C -0.090 4.090 8 C -0.067 4.067 9 C 0.096 3.904 10 H 0.084 0.916 11 C -0.208 4.208 12 N -0.369 5.369 13 C -0.458 4.458 14 H 0.083 0.917 15 C -0.240 4.240 16 N -0.590 5.590 17 Si 0.911 3.089 18 H -0.223 1.223 19 H -0.222 1.222 20 H -0.214 1.214 21 H 0.097 0.903 22 H 0.098 0.902 23 H 0.121 0.879 24 H 0.132 0.868 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.151 0.849 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.202 0.798 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.178 -2.690 4.005 14.033 hybrid contribution -1.878 0.893 1.237 2.420 sum -15.056 -1.797 5.242 16.043 Atomic orbital electron populations 1.23665 0.96833 1.06384 1.05125 1.85519 1.04240 1.04442 1.92939 1.21541 0.96357 0.95683 1.07009 1.20957 0.97393 0.93338 1.04818 1.20854 0.96391 0.94949 1.01807 1.21192 0.92862 0.99434 1.01469 1.21089 0.99957 0.91889 0.96072 1.21004 0.92843 0.96728 0.96147 1.19188 0.85500 0.92209 0.93462 0.91615 1.21994 1.01466 1.00991 0.96372 1.42469 1.17991 1.71755 1.04718 1.20067 1.05377 1.37345 0.83017 0.91747 1.25711 0.92974 0.98513 1.06798 1.70864 1.35807 1.48509 1.03850 0.83237 0.75096 0.76405 0.74198 1.22288 1.22154 1.21410 0.90254 0.90211 0.87944 0.86781 0.86685 0.86510 0.84924 0.92204 0.93098 0.92122 0.79835 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.15 101.05 0.92 -0.66 16 2 S -0.11 -1.71 20.31 -107.50 -2.18 -3.90 16 3 C -0.09 -1.63 6.11 -39.03 -0.24 -1.87 16 4 C -0.14 -2.19 9.36 -39.37 -0.37 -2.56 16 5 C -0.12 -1.82 10.04 -39.62 -0.40 -2.22 16 6 C -0.13 -2.19 10.04 -39.53 -0.40 -2.58 16 7 C -0.07 -1.40 9.32 -39.62 -0.37 -1.77 16 8 C -0.06 -1.17 5.03 -104.41 -0.53 -1.70 16 9 C 0.21 4.38 2.55 -69.08 -0.18 4.20 16 10 H 0.07 1.48 7.03 -51.93 -0.36 1.11 16 11 C -0.15 -2.67 9.33 37.16 0.35 -2.33 16 12 N -0.73 -18.22 3.84 -54.55 -0.21 -18.43 16 13 C -0.33 -9.23 9.91 -15.06 -0.15 -9.38 16 14 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 16 N -0.94 -29.01 13.70 55.49 0.76 -28.25 16 17 Si 1.08 26.39 29.92 -169.99 -5.09 21.30 16 18 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H 0.08 0.75 7.75 -51.93 -0.40 0.35 16 22 H 0.08 0.80 7.75 -51.92 -0.40 0.40 16 23 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 24 H 0.11 1.45 5.88 -52.49 -0.31 1.14 16 25 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 26 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.13 2.90 7.23 -52.49 -0.38 2.52 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.06 0.97 7.56 -51.93 -0.39 0.58 16 31 H 0.37 9.39 6.62 -40.82 -0.27 9.12 16 32 H 0.25 7.67 6.77 -40.82 -0.28 7.39 16 LS Contribution 280.39 15.07 4.23 4.23 Total: -1.00 -31.15 280.39 -8.06 -39.21 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.12 Total: 8.05 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -1.45 Total: -22.20 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.55 Total: -46.68 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -5.09 Total: 21.30 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.18 Total: -3.90 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.15 -8.06 -39.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281608177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.496 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds