Wall clock time and date at job start Sun Mar 29 2020 21:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76193 * 102.99906 * 2 1 4 4 C 1.39000 * 120.08238 * 0.02562 * 3 2 1 5 5 C 1.38056 * 119.92065 * 179.97438 * 4 3 2 6 6 C 1.38328 * 120.08055 * 359.97438 * 5 4 3 7 7 C 1.38280 * 120.15835 * 359.74576 * 6 5 4 8 8 C 1.38103 * 120.08288 * 0.51267 * 7 6 5 9 9 C 1.50694 * 120.04218 * 179.77003 * 8 7 6 10 10 H 1.09000 * 109.47159 * 216.05603 * 9 8 7 11 11 C 1.53002 * 109.47554 * 96.05377 * 9 8 7 12 12 N 1.46499 * 109.47307 * 336.05106 * 9 8 7 13 13 C 1.36940 * 120.00245 * 276.35307 * 12 9 8 14 14 H 1.08002 * 119.99772 * 359.97438 * 13 12 9 15 15 C 1.38809 * 119.99895 * 180.02562 * 13 12 9 16 16 N 1.31616 * 120.00405 * 359.71526 * 15 13 12 17 17 Si 1.86802 * 119.99597 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47253 * 269.72178 * 17 15 13 19 19 H 1.48500 * 109.47321 * 29.72467 * 17 15 13 20 20 H 1.48506 * 109.46920 * 149.72335 * 17 15 13 21 21 H 1.08994 * 109.47629 * 300.00475 * 1 2 3 22 22 H 1.09007 * 109.46858 * 60.00362 * 1 2 3 23 23 H 1.09001 * 109.47437 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.03941 * 359.95605 * 4 3 2 25 25 H 1.08000 * 119.96163 * 179.97438 * 5 4 3 26 26 H 1.07999 * 119.91872 * 180.02562 * 6 5 4 27 27 H 1.07999 * 119.95827 * 180.25820 * 7 6 5 28 28 H 1.08992 * 109.47231 * 179.97438 * 11 9 8 29 29 H 1.09007 * 109.46807 * 300.00041 * 11 9 8 30 30 H 1.09004 * 109.47166 * 59.99654 * 11 9 8 31 31 H 0.97004 * 120.00017 * 96.34741 * 12 9 8 32 32 H 0.97005 * 119.99621 * 0.28340 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0105 0.0011 6 6 2.8329 4.4131 0.0016 7 6 3.8455 3.4714 0.0069 8 6 3.5386 2.1249 0.0010 9 6 4.6429 1.0995 0.0016 10 1 4.3461 0.2456 -0.6074 11 6 4.9077 0.6358 1.4354 12 7 5.8618 1.6941 -0.5524 13 6 6.0466 1.7388 -1.9085 14 1 5.2940 1.3353 -2.5697 15 6 7.2018 2.3017 -2.4333 16 7 8.1170 2.7976 -1.6278 17 14 7.4543 2.3620 -4.2832 18 1 8.1567 1.1314 -4.7274 19 1 6.1355 2.4509 -4.9602 20 1 8.2713 3.5518 -4.6328 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 0.1617 2.3526 0.0002 25 1 0.7212 4.7487 0.0011 26 1 3.0758 5.4654 0.0024 27 1 4.8776 3.7893 0.0115 28 1 5.7061 -0.1061 1.4357 29 1 5.2046 1.4898 2.0444 30 1 4.0008 0.1934 1.8476 31 1 6.5379 2.0563 0.0414 32 1 7.9860 2.7660 -0.6671 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281608177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:36 Heat of formation + Delta-G solvation = 14.359586 kcal Electronic energy + Delta-G solvation = -14639.915436 eV Core-core repulsion = 12304.974022 eV Total energy + Delta-G solvation = -2334.941414 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.30621 -37.32766 -34.46974 -32.18295 -31.16652 -29.88239 -29.51919 -25.64377 -24.43973 -23.60717 -21.50858 -19.46383 -18.52798 -17.21818 -16.56529 -16.43650 -15.74590 -15.44800 -14.97681 -14.92754 -14.75717 -14.57733 -13.95748 -13.37204 -13.27490 -13.09288 -12.75851 -12.72008 -12.38374 -12.23159 -11.93896 -11.83909 -11.30565 -11.20643 -10.84972 -10.60619 -9.67835 -9.15899 -8.39266 -8.30708 -5.33414 0.30899 0.49518 0.64668 1.55400 1.58858 1.65953 1.80283 2.68596 2.80148 3.38930 3.67729 3.94571 4.02601 4.19617 4.29564 4.31363 4.35737 4.40842 4.52120 4.59245 4.83670 4.85860 4.91371 5.06456 5.10201 5.21963 5.35838 5.54602 5.60193 5.80262 6.05640 6.50032 7.07918 7.97235 8.09581 9.12727 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.025762 B = 0.007741 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.611778 B = 3616.234171 C = 3825.045580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.152 6.152 3 C -0.100 4.100 4 C -0.137 4.137 5 C -0.110 4.110 6 C -0.135 4.135 7 C -0.098 4.098 8 C -0.086 4.086 9 C 0.207 3.793 10 H 0.049 0.951 11 C -0.139 4.139 12 N -0.737 5.737 13 C -0.321 4.321 14 H 0.055 0.945 15 C -0.099 4.099 16 N -0.974 5.974 17 Si 1.124 2.876 18 H -0.283 1.283 19 H -0.279 1.279 20 H -0.290 1.290 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.125 0.875 24 H 0.150 0.850 25 H 0.156 0.844 26 H 0.135 0.865 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.361 0.639 32 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 -2.085 5.196 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.089 5.911 3 C -0.213 4.213 4 C -0.161 4.161 5 C -0.129 4.129 6 C -0.156 4.156 7 C -0.119 4.119 8 C -0.094 4.094 9 C 0.098 3.902 10 H 0.067 0.933 11 C -0.197 4.197 12 N -0.379 5.379 13 C -0.452 4.452 14 H 0.073 0.927 15 C -0.290 4.290 16 N -0.622 5.622 17 Si 0.950 3.050 18 H -0.210 1.210 19 H -0.205 1.205 20 H -0.217 1.217 21 H 0.115 0.885 22 H 0.108 0.892 23 H 0.144 0.856 24 H 0.168 0.832 25 H 0.174 0.826 26 H 0.153 0.847 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.194 0.806 32 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.381 -2.795 3.837 17.055 hybrid contribution -1.081 0.872 1.366 1.948 sum -17.463 -1.923 5.203 18.323 Atomic orbital electron populations 1.23788 0.92000 1.08370 1.06393 1.85646 1.09482 1.03209 1.92725 1.21715 0.95756 0.97414 1.06377 1.21421 0.98568 0.93082 1.03004 1.21313 0.96343 0.95875 0.99364 1.21424 0.93236 0.99799 1.01105 1.20953 0.99245 0.92939 0.98725 1.20732 0.93659 0.96132 0.98872 1.19271 0.84511 0.91898 0.94531 0.93296 1.21886 1.02294 1.00900 0.94585 1.42559 1.19418 1.72190 1.03697 1.20238 1.04693 1.35835 0.84457 0.92664 1.27034 0.93063 0.98660 1.10253 1.70960 1.36941 1.50749 1.03541 0.82657 0.75748 0.76582 0.70031 1.21014 1.20453 1.21673 0.88548 0.89225 0.85650 0.83216 0.82604 0.84712 0.88375 0.92427 0.93038 0.90141 0.80621 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.15 113.37 1.04 -1.27 16 2 S -0.15 -4.34 20.31 -56.49 -1.15 -5.49 16 3 C -0.10 -3.35 6.11 22.62 0.14 -3.21 16 4 C -0.14 -3.76 9.36 22.41 0.21 -3.55 16 5 C -0.11 -2.93 10.04 22.25 0.22 -2.71 16 6 C -0.14 -4.41 10.04 22.30 0.22 -4.19 16 7 C -0.10 -4.03 9.32 22.25 0.21 -3.82 16 8 C -0.09 -3.47 5.03 -19.73 -0.10 -3.57 16 9 C 0.21 9.02 2.55 44.24 0.11 9.13 16 10 H 0.05 2.28 7.03 -2.39 -0.02 2.26 16 11 C -0.14 -5.04 9.33 71.98 0.67 -4.37 16 12 N -0.74 -38.59 3.84 -326.51 -1.25 -39.84 16 13 C -0.32 -18.67 9.91 84.03 0.83 -17.84 16 14 H 0.06 3.26 7.83 -2.91 -0.02 3.24 16 15 C -0.10 -5.86 5.50 84.86 0.47 -5.40 16 16 N -0.97 -61.72 13.70 21.65 0.30 -61.42 16 17 Si 1.12 53.82 29.92 68.60 2.05 55.87 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 21 H 0.10 1.34 7.75 -2.39 -0.02 1.32 16 22 H 0.09 1.38 7.75 -2.39 -0.02 1.36 16 23 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.15 2.99 5.88 -2.91 -0.02 2.97 16 25 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 26 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 27 H 0.10 4.60 7.23 -2.91 -0.02 4.58 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.08 2.57 7.56 -2.39 -0.02 2.55 16 31 H 0.36 19.55 6.62 -92.71 -0.61 18.94 16 32 H 0.24 15.43 6.77 -92.70 -0.63 14.80 16 Total: -1.00 -69.40 280.39 4.61 -64.78 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.64 Total: 26.88 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.02 Total: -40.79 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -0.96 Total: -101.27 kcal Atomic # 14 Polarization: 53.82 SS G_CDS: 2.05 Total: 55.87 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -1.15 Total: -5.49 kcal Total: -69.40 4.61 -64.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281608177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.142 kcal (2) G-P(sol) polarization free energy of solvation -69.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds