Wall clock time and date at job start Sun Mar 29 2020 22:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47169 * 28.08552 * 3 2 1 5 5 C 1.37094 * 120.00255 * 95.96255 * 4 3 2 6 6 H 1.08002 * 120.00491 * 159.67267 * 5 4 3 7 7 C 1.38953 * 119.99854 * 339.67396 * 5 4 3 8 8 N 1.31414 * 119.99546 * 348.89411 * 7 5 4 9 9 Si 1.86800 * 120.00229 * 168.88886 * 7 5 4 10 10 H 1.48500 * 109.46709 * 60.00449 * 9 7 5 11 11 H 1.48499 * 109.47113 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47203 * 300.00512 * 9 7 5 13 13 C 1.34784 * 120.00106 * 275.95685 * 4 3 2 14 14 O 1.21295 * 119.99961 * 186.14067 * 13 4 3 15 15 C 1.50702 * 119.99907 * 6.14331 * 13 4 3 16 16 H 1.09005 * 109.52085 * 32.23186 * 15 13 4 17 17 C 1.53172 * 109.51947 * 152.41925 * 15 13 4 18 18 C 1.53180 * 109.03277 * 176.88534 * 17 15 13 19 19 C 1.53091 * 109.16651 * 303.02240 * 18 17 15 20 20 O 1.42925 * 109.42065 * 57.60677 * 19 18 17 21 21 C 1.42897 * 114.08682 * 298.85426 * 20 19 18 22 22 H 4.40637 * 5.51394 * 180.02562 * 4 1 2 23 23 H 1.09000 * 109.46759 * 268.08380 * 3 2 1 24 24 H 1.09001 * 109.46841 * 148.09004 * 3 2 1 25 25 H 0.97003 * 119.99455 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.55130 * 296.74885 * 17 15 13 27 27 H 1.08998 * 109.54164 * 56.93590 * 17 15 13 28 28 H 1.09001 * 109.52428 * 62.92709 * 18 17 15 29 29 H 1.09007 * 109.52392 * 183.11427 * 18 17 15 30 30 H 1.08998 * 109.48461 * 177.58969 * 19 18 17 31 31 H 1.09002 * 109.48294 * 297.61398 * 19 18 17 32 32 H 1.09001 * 109.48033 * 301.16072 * 21 20 19 33 33 H 1.08996 * 109.48399 * 181.13917 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2176 -0.6502 5 6 3.4797 -1.1955 -1.9769 6 1 4.1307 -1.9579 -2.3786 7 6 2.9915 -0.1921 -2.8050 8 7 2.0354 0.6031 -2.3801 9 14 3.6943 0.0266 -4.5218 10 1 3.4850 -1.2179 -5.3045 11 1 3.0089 1.1577 -5.1970 12 1 5.1482 0.3140 -4.4286 13 6 3.2459 -2.3604 0.0559 14 8 3.7540 -3.3388 -0.4498 15 6 2.7386 -2.4223 1.4736 16 1 1.8735 -1.7677 1.5798 17 6 2.3377 -3.8616 1.8112 18 6 1.8977 -3.9268 3.2770 19 6 3.0347 -3.4165 4.1662 20 8 3.3794 -2.0845 3.7792 21 6 3.8430 -1.9701 2.4324 22 1 -1.0498 -0.0002 -0.0003 23 1 3.0093 0.0352 1.0271 24 1 3.0089 0.8732 -0.5432 25 1 1.6943 1.3033 -2.9583 26 1 1.5130 -4.1707 1.1690 27 1 3.1894 -4.5235 1.6551 28 1 1.0152 -3.3033 3.4206 29 1 1.6632 -4.9580 3.5415 30 1 2.7118 -3.4204 5.2073 31 1 3.9037 -4.0645 4.0528 32 1 4.7227 -2.5991 2.2961 33 1 4.1026 -0.9322 2.2242 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281612581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:39 Heat of formation + Delta-G solvation = -20.957549 kcal Electronic energy + Delta-G solvation = -17381.027394 eV Core-core repulsion = 14601.801644 eV Total energy + Delta-G solvation = -2779.225751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.65730 -37.90587 -35.24676 -33.19950 -32.17083 -31.27101 -30.71755 -26.49119 -25.20148 -24.62703 -23.32859 -20.48900 -18.73790 -17.86999 -16.75866 -16.18071 -15.95491 -15.74101 -14.70162 -14.60020 -14.20960 -13.78610 -13.49162 -12.93071 -12.57863 -12.42207 -12.22428 -12.03145 -11.45492 -11.21749 -11.00674 -10.69389 -10.65347 -10.55035 -10.34179 -10.09903 -9.41023 -9.30274 -9.25279 -8.82841 -8.39290 -7.85660 -6.30566 -3.91634 3.16602 3.23598 3.26651 3.66041 3.85350 4.05601 4.07022 4.19440 4.85164 5.03292 5.05661 5.11234 5.26150 5.39502 5.47936 5.49324 5.66151 5.76356 5.88249 5.99040 6.08874 6.17483 6.20581 6.38305 6.52271 6.66684 6.84396 7.07298 7.35507 7.53711 8.04469 8.41475 8.82739 9.11174 9.33629 9.87783 10.68543 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034875 B = 0.007844 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.672367 B = 3568.932725 C = 3921.918560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.106 4.106 3 C 0.230 3.770 4 N -0.441 5.441 5 C -0.312 4.312 6 H 0.103 0.897 7 C 0.029 3.971 8 N -0.873 5.873 9 Si 0.928 3.072 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.459 3.541 14 O -0.582 6.582 15 C -0.138 4.138 16 H 0.092 0.908 17 C -0.100 4.100 18 C -0.155 4.155 19 C 0.060 3.940 20 O -0.383 6.383 21 C 0.073 3.927 22 H 0.198 0.802 23 H 0.059 0.941 24 H 0.119 0.881 25 H 0.269 0.731 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -1.806 9.473 9.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.108 4.108 3 C 0.106 3.894 4 N -0.159 5.159 5 C -0.439 4.439 6 H 0.120 0.880 7 C -0.174 4.174 8 N -0.511 5.511 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.248 3.752 14 O -0.466 6.466 15 C -0.160 4.160 16 H 0.110 0.890 17 C -0.138 4.138 18 C -0.193 4.193 19 C -0.017 4.017 20 O -0.301 6.301 21 C -0.004 4.004 22 H 0.215 0.785 23 H 0.077 0.923 24 H 0.136 0.864 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.266 -1.948 9.229 9.436 hybrid contribution -0.258 0.086 -1.235 1.265 sum -0.524 -1.862 7.993 8.224 Atomic orbital electron populations 1.24259 0.95382 1.02806 1.06271 1.23187 0.94361 0.97964 0.95274 1.18443 0.84270 0.91343 0.95297 1.43689 1.55904 1.06456 1.09824 1.19662 1.27929 1.12977 0.83375 0.87971 1.25347 0.95272 0.96888 0.99895 1.69978 1.24221 1.19652 1.37291 0.85964 0.78950 0.77925 0.81657 1.19923 1.20967 1.19879 1.19892 0.84538 0.83230 0.87587 1.90506 1.48318 1.35500 1.72280 1.21888 1.00362 0.99043 0.94673 0.88967 1.21349 1.02045 0.95538 0.94836 1.22215 0.99364 1.01552 0.96143 1.22562 0.96588 0.84245 0.98297 1.87908 1.85557 1.27812 1.28861 1.22552 0.94976 1.02107 0.80722 0.78455 0.92303 0.86381 0.92025 0.91542 0.90845 0.91183 0.91046 0.89271 0.93298 0.92633 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.63 19.25 29.55 0.57 -5.06 16 2 C -0.11 -2.41 10.19 -37.12 -0.38 -2.79 16 3 C 0.23 5.14 4.80 -6.83 -0.03 5.10 16 4 N -0.44 -11.12 2.60 -117.93 -0.31 -11.43 16 5 C -0.31 -8.55 9.37 -14.93 -0.14 -8.69 16 6 H 0.10 2.93 7.33 -52.49 -0.38 2.54 16 7 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 8 N -0.87 -22.75 9.02 55.50 0.50 -22.25 16 9 Si 0.93 20.57 29.57 -169.99 -5.03 15.54 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.46 11.12 6.64 -10.98 -0.07 11.05 16 14 O -0.58 -15.93 15.74 5.54 0.09 -15.84 16 15 C -0.14 -2.65 1.89 -91.64 -0.17 -2.82 16 16 H 0.09 1.81 6.06 -51.93 -0.31 1.50 16 17 C -0.10 -1.72 4.94 -26.55 -0.13 -1.85 16 18 C -0.15 -2.07 6.14 -26.59 -0.16 -2.24 16 19 C 0.06 0.78 6.84 37.20 0.25 1.03 16 20 O -0.38 -6.07 10.77 -35.23 -0.38 -6.45 16 21 C 0.07 1.25 5.95 37.20 0.22 1.47 16 22 H 0.20 3.39 7.80 -54.10 -0.42 2.96 16 23 H 0.06 1.13 5.51 -51.93 -0.29 0.84 16 24 H 0.12 2.79 6.31 -51.93 -0.33 2.46 16 25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.32 7.76 -51.93 -0.40 0.91 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.57 6.52 -51.93 -0.34 1.23 16 LS Contribution 274.57 15.07 4.14 4.14 Total: -1.00 -30.53 274.57 -5.27 -35.80 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.15 Total: 4.64 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.14 Total: -4.13 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.19 Total: -33.68 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.29 Total: -22.29 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.53 -5.27 -35.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281612581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.838 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds