Wall clock time and date at job start Sun Mar 29 2020 22:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47169 * 28.08552 * 3 2 1 5 5 C 1.37094 * 120.00255 * 95.96255 * 4 3 2 6 6 H 1.08002 * 120.00491 * 159.67267 * 5 4 3 7 7 C 1.38953 * 119.99854 * 339.67396 * 5 4 3 8 8 N 1.31414 * 119.99546 * 348.89411 * 7 5 4 9 9 Si 1.86800 * 120.00229 * 168.88886 * 7 5 4 10 10 H 1.48500 * 109.46709 * 60.00449 * 9 7 5 11 11 H 1.48499 * 109.47113 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47203 * 300.00512 * 9 7 5 13 13 C 1.34784 * 120.00106 * 275.95685 * 4 3 2 14 14 O 1.21295 * 119.99961 * 186.14067 * 13 4 3 15 15 C 1.50702 * 119.99907 * 6.14331 * 13 4 3 16 16 H 1.09005 * 109.52085 * 32.23186 * 15 13 4 17 17 C 1.53172 * 109.51947 * 152.41925 * 15 13 4 18 18 C 1.53180 * 109.03277 * 176.88534 * 17 15 13 19 19 C 1.53091 * 109.16651 * 303.02240 * 18 17 15 20 20 O 1.42925 * 109.42065 * 57.60677 * 19 18 17 21 21 C 1.42897 * 114.08682 * 298.85426 * 20 19 18 22 22 H 4.40637 * 5.51394 * 180.02562 * 4 1 2 23 23 H 1.09000 * 109.46759 * 268.08380 * 3 2 1 24 24 H 1.09001 * 109.46841 * 148.09004 * 3 2 1 25 25 H 0.97003 * 119.99455 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.55130 * 296.74885 * 17 15 13 27 27 H 1.08998 * 109.54164 * 56.93590 * 17 15 13 28 28 H 1.09001 * 109.52428 * 62.92709 * 18 17 15 29 29 H 1.09007 * 109.52392 * 183.11427 * 18 17 15 30 30 H 1.08998 * 109.48461 * 177.58969 * 19 18 17 31 31 H 1.09002 * 109.48294 * 297.61398 * 19 18 17 32 32 H 1.09001 * 109.48033 * 301.16072 * 21 20 19 33 33 H 1.08996 * 109.48399 * 181.13917 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2176 -0.6502 5 6 3.4797 -1.1955 -1.9769 6 1 4.1307 -1.9579 -2.3786 7 6 2.9915 -0.1921 -2.8050 8 7 2.0354 0.6031 -2.3801 9 14 3.6943 0.0266 -4.5218 10 1 3.4850 -1.2179 -5.3045 11 1 3.0089 1.1577 -5.1970 12 1 5.1482 0.3140 -4.4286 13 6 3.2459 -2.3604 0.0559 14 8 3.7540 -3.3388 -0.4498 15 6 2.7386 -2.4223 1.4736 16 1 1.8735 -1.7677 1.5798 17 6 2.3377 -3.8616 1.8112 18 6 1.8977 -3.9268 3.2770 19 6 3.0347 -3.4165 4.1662 20 8 3.3794 -2.0845 3.7792 21 6 3.8430 -1.9701 2.4324 22 1 -1.0498 -0.0002 -0.0003 23 1 3.0093 0.0352 1.0271 24 1 3.0089 0.8732 -0.5432 25 1 1.6943 1.3033 -2.9583 26 1 1.5130 -4.1707 1.1690 27 1 3.1894 -4.5235 1.6551 28 1 1.0152 -3.3033 3.4206 29 1 1.6632 -4.9580 3.5415 30 1 2.7118 -3.4204 5.2073 31 1 3.9037 -4.0645 4.0528 32 1 4.7227 -2.5991 2.2961 33 1 4.1026 -0.9322 2.2242 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281612581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:39 Heat of formation + Delta-G solvation = -40.274797 kcal Electronic energy + Delta-G solvation = -17381.865053 eV Core-core repulsion = 14601.801644 eV Total energy + Delta-G solvation = -2780.063409 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24972 -39.44478 -37.16290 -34.63180 -33.95496 -33.05673 -32.13884 -28.31956 -26.94253 -25.96358 -24.82389 -21.91113 -20.37841 -19.70125 -18.55673 -17.98760 -17.26583 -17.07274 -16.49503 -16.04311 -15.89349 -15.35103 -15.02070 -14.43965 -14.25851 -14.04138 -13.86528 -13.52290 -13.26843 -12.83260 -12.57236 -12.46898 -12.18212 -12.06670 -11.83486 -11.37663 -11.26650 -11.03848 -10.64143 -10.60643 -10.23702 -9.82662 -8.29308 -5.98929 1.37312 1.41221 1.50919 1.84631 2.09182 2.30859 2.38024 2.82015 3.04886 3.21370 3.69523 3.84169 3.86671 3.98942 4.02281 4.19306 4.35598 4.45920 4.58429 4.65323 4.77698 4.85660 4.96156 5.03056 5.03521 5.14543 5.34646 5.42884 5.43496 6.03283 6.17581 6.42953 7.10970 7.13178 7.38740 7.93803 8.66828 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034875 B = 0.007844 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.672367 B = 3568.932725 C = 3921.918560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.149 4.149 3 C 0.233 3.767 4 N -0.451 5.451 5 C -0.351 4.351 6 H 0.076 0.924 7 C 0.000 4.000 8 N -0.879 5.879 9 Si 0.989 3.011 10 H -0.280 1.280 11 H -0.271 1.271 12 H -0.267 1.267 13 C 0.450 3.550 14 O -0.625 6.625 15 C -0.127 4.127 16 H 0.090 0.910 17 C -0.101 4.101 18 C -0.145 4.145 19 C 0.052 3.948 20 O -0.387 6.387 21 C 0.082 3.918 22 H 0.233 0.767 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.272 0.728 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 -1.429 10.693 10.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.151 4.151 3 C 0.111 3.889 4 N -0.169 5.169 5 C -0.478 4.478 6 H 0.094 0.906 7 C -0.202 4.202 8 N -0.517 5.517 9 Si 0.813 3.187 10 H -0.206 1.206 11 H -0.196 1.196 12 H -0.192 1.192 13 C 0.240 3.760 14 O -0.512 6.512 15 C -0.149 4.149 16 H 0.109 0.891 17 C -0.139 4.139 18 C -0.182 4.182 19 C -0.024 4.024 20 O -0.306 6.306 21 C 0.005 3.995 22 H 0.250 0.750 23 H 0.106 0.894 24 H 0.119 0.881 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.141 0.859 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.155 -1.545 10.479 10.655 hybrid contribution -0.048 -0.053 -1.600 1.601 sum -1.203 -1.598 8.880 9.102 Atomic orbital electron populations 1.25141 0.96355 1.00903 1.04489 1.23440 0.94987 0.99702 0.96937 1.18430 0.84713 0.89477 0.96254 1.43890 1.55849 1.07720 1.09443 1.19613 1.29399 1.13710 0.85102 0.90599 1.26032 0.95188 0.95978 1.03007 1.70091 1.24037 1.19316 1.38218 0.85061 0.78690 0.77682 0.77262 1.20622 1.19604 1.19154 1.20756 0.83515 0.82357 0.89416 1.90462 1.50138 1.36882 1.73727 1.21830 1.00763 1.00553 0.91786 0.89147 1.21376 1.01071 0.93799 0.97648 1.22186 0.99522 1.03567 0.92970 1.22878 0.96761 0.82963 0.99832 1.87911 1.85506 1.29767 1.27424 1.22384 0.93864 1.02208 0.81081 0.75007 0.89414 0.88083 0.91757 0.93030 0.92040 0.90837 0.88183 0.85894 0.92517 0.92932 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.06 19.25 74.32 1.43 -8.62 16 2 C -0.15 -6.67 10.19 31.13 0.32 -6.35 16 3 C 0.23 10.52 4.80 84.57 0.41 10.93 16 4 N -0.45 -23.39 2.60 -645.41 -1.68 -25.07 16 5 C -0.35 -19.87 9.37 84.04 0.79 -19.08 16 6 H 0.08 4.59 7.33 -2.91 -0.02 4.57 16 7 C 0.00 0.02 5.11 84.93 0.43 0.46 16 8 N -0.88 -45.70 9.02 21.66 0.20 -45.50 16 9 Si 0.99 42.35 29.57 68.60 2.03 44.38 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 12 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 13 C 0.45 22.40 6.64 87.66 0.58 22.98 16 14 O -0.62 -35.67 15.74 -3.08 -0.05 -35.72 16 15 C -0.13 -4.89 1.89 -11.45 -0.02 -4.91 16 16 H 0.09 3.50 6.06 -2.38 -0.01 3.48 16 17 C -0.10 -3.42 4.94 30.71 0.15 -3.27 16 18 C -0.14 -3.48 6.14 30.68 0.19 -3.29 16 19 C 0.05 1.17 6.84 72.01 0.49 1.66 16 20 O -0.39 -11.36 10.77 -148.98 -1.60 -12.96 16 21 C 0.08 2.71 5.95 72.01 0.43 3.14 16 22 H 0.23 7.21 7.80 -4.43 -0.03 7.18 16 23 H 0.09 3.33 5.51 -2.39 -0.01 3.32 16 24 H 0.10 4.85 6.31 -2.39 -0.02 4.83 16 25 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 2.21 7.76 -2.39 -0.02 2.20 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.10 3.18 6.52 -2.39 -0.02 3.16 16 Total: -1.00 -66.83 274.57 5.19 -61.64 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 1.10 Total: 19.59 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 5.20 Total: -6.36 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -1.48 Total: -70.58 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -1.65 Total: -48.68 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -66.83 5.19 -61.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281612581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.363 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds