Wall clock time and date at job start Sun Mar 29 2020 22:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 C 1.50704 * 109.47253 * 179.97438 * 3 2 1 5 5 O 1.33668 * 125.81047 * 270.18513 * 4 3 2 6 6 C 1.34220 * 110.91049 * 180.25589 * 5 4 3 7 7 C 1.34170 * 109.14236 * 359.74638 * 6 5 4 8 8 C 1.36494 * 125.80941 * 89.99908 * 4 3 2 9 9 C 1.47298 * 127.19633 * 0.03316 * 8 4 3 10 10 O 1.21640 * 120.00060 * 5.05990 * 9 8 4 11 11 N 1.34775 * 119.99918 * 185.34286 * 9 8 4 12 12 C 1.46509 * 119.99952 * 353.92907 * 11 9 8 13 13 C 1.36969 * 120.00330 * 173.93348 * 11 9 8 14 14 H 1.08001 * 119.99468 * 25.36146 * 13 11 9 15 15 C 1.38978 * 120.00040 * 205.36310 * 13 11 9 16 16 N 1.31408 * 120.00209 * 18.73129 * 15 13 11 17 17 Si 1.86798 * 119.99863 * 198.73078 * 15 13 11 18 18 H 1.48506 * 109.47001 * 90.00035 * 17 15 13 19 19 H 1.48501 * 109.47180 * 210.00157 * 17 15 13 20 20 H 1.48500 * 109.47306 * 329.99987 * 17 15 13 21 21 H 1.09002 * 109.46682 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47591 * 299.99902 * 1 2 3 23 23 H 1.09002 * 109.46911 * 59.99714 * 1 2 3 24 24 H 1.09000 * 109.47309 * 240.00610 * 2 1 3 25 25 H 1.09001 * 109.47257 * 119.99872 * 2 1 3 26 26 H 1.09003 * 109.47133 * 60.00358 * 3 2 1 27 27 H 1.09002 * 109.47577 * 299.99878 * 3 2 1 28 28 H 1.07997 * 125.43147 * 179.71074 * 6 5 4 29 29 H 1.08000 * 127.01745 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.46842 * 64.20272 * 12 11 9 31 31 H 1.09003 * 109.46767 * 184.20083 * 12 11 9 32 32 H 1.08994 * 109.47217 * 304.20209 * 12 11 9 33 33 H 0.96996 * 120.00037 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.3286 1.4393 1.0849 6 6 5.6258 1.4461 0.7404 7 6 5.7257 1.4485 -0.5976 8 6 4.3461 1.4425 -1.1060 9 6 3.9161 1.4429 -2.5148 10 8 2.7350 1.5364 -2.7902 11 7 4.8309 1.3340 -3.4985 12 6 6.2598 1.3492 -3.1751 13 6 4.4249 1.2093 -4.8007 14 1 3.4625 1.5932 -5.1053 15 6 5.2513 0.5888 -5.7299 16 7 6.2276 -0.1913 -5.3234 17 14 4.9744 0.8636 -7.5566 18 1 5.7660 2.0369 -8.0063 19 1 5.4048 -0.3419 -8.3095 20 1 3.5322 1.1144 -7.8065 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 6.4568 1.4497 1.4302 29 1 6.6340 1.4533 -1.1818 30 1 6.5044 0.4767 -2.5692 31 1 6.8412 1.3261 -4.0968 32 1 6.4968 2.2559 -2.6186 33 1 6.8041 -0.6247 -5.9720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281622755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:09 Heat of formation + Delta-G solvation = -13.633666 kcal Electronic energy + Delta-G solvation = -17052.894651 eV Core-core repulsion = 14273.986487 eV Total energy + Delta-G solvation = -2778.908163 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.97419 -38.15735 -35.14227 -34.36421 -32.54312 -31.25482 -29.82137 -26.54726 -26.18856 -24.62099 -22.07068 -21.41121 -20.56203 -18.31986 -17.14862 -16.43549 -15.65252 -15.42909 -14.82460 -14.60462 -14.14789 -13.76270 -13.71888 -13.06531 -12.73600 -12.40404 -12.21766 -11.79453 -11.57248 -11.36793 -11.23223 -11.01219 -10.97366 -10.57875 -10.35308 -10.32869 -10.19289 -9.19833 -8.89884 -8.43812 -8.01422 -7.59376 -6.37372 -3.87404 2.06245 2.68778 3.19333 3.24588 3.29786 3.35654 4.12198 4.42589 4.91771 4.99630 5.13349 5.29342 5.34904 5.49170 5.63525 5.70070 5.87453 6.02928 6.08723 6.13282 6.21660 6.32959 6.40597 6.54195 6.61182 6.68689 6.70529 6.91954 7.18698 7.55377 7.60527 8.18508 8.50625 9.17183 9.41732 10.02806 10.67287 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.007727 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.325695 B = 3622.709245 C = 4399.971955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.038 4.038 4 C 0.037 3.963 5 O -0.186 6.186 6 C -0.063 4.063 7 C -0.203 4.203 8 C -0.199 4.199 9 C 0.513 3.487 10 O -0.588 6.588 11 N -0.433 5.433 12 C 0.089 3.911 13 C -0.303 4.303 14 H 0.101 0.899 15 C 0.029 3.971 16 N -0.872 5.872 17 Si 0.925 3.075 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.268 1.268 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.199 0.801 29 H 0.170 0.830 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.030 0.970 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 1.713 9.680 9.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.075 4.075 4 C -0.015 4.015 5 O -0.083 6.083 6 C -0.128 4.128 7 C -0.222 4.222 8 C -0.204 4.204 9 C 0.303 3.697 10 O -0.474 6.474 11 N -0.150 5.150 12 C -0.055 4.055 13 C -0.431 4.431 14 H 0.118 0.882 15 C -0.175 4.175 16 N -0.511 5.511 17 Si 0.751 3.249 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.192 1.192 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.133 0.867 28 H 0.215 0.785 29 H 0.187 0.813 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.048 0.952 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.290 1.632 9.693 9.913 hybrid contribution 0.572 -0.067 -0.942 1.104 sum -0.718 1.565 8.751 8.918 Atomic orbital electron populations 1.21722 0.95481 1.01474 1.01787 1.21439 0.95807 0.95695 1.02385 1.20337 0.84047 0.98729 1.04360 1.22623 0.93473 1.02341 0.83099 1.83648 1.16975 1.72243 1.35428 1.23751 0.83598 1.09011 0.96487 1.23840 0.98310 1.05796 0.94277 1.21626 0.92410 1.11018 0.95333 1.17087 0.85753 0.83925 0.82956 1.90551 1.16797 1.56675 1.83412 1.43333 1.04560 1.61285 1.05782 1.22080 0.83950 0.97057 1.02393 1.19689 1.05091 1.35603 0.82752 0.88150 1.25348 0.96778 0.94611 1.00736 1.70002 1.19360 1.26628 1.35120 0.85944 0.79123 0.77770 0.82023 1.20295 1.20957 1.19240 0.92838 0.93112 0.92124 0.90935 0.92562 0.91212 0.86683 0.78456 0.81298 0.93520 0.88544 0.95219 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.84 5.92 -26.73 -0.16 -1.99 16 3 C -0.04 -0.64 5.28 -27.88 -0.15 -0.79 16 4 C 0.04 0.71 6.63 -34.94 -0.23 0.48 16 5 O -0.19 -3.21 10.52 7.60 0.08 -3.13 16 6 C -0.06 -0.96 12.03 29.30 0.35 -0.61 16 7 C -0.20 -3.70 8.89 -37.45 -0.33 -4.03 16 8 C -0.20 -4.36 6.19 -103.28 -0.64 -5.00 16 9 C 0.51 13.37 7.61 -12.58 -0.10 13.27 16 10 O -0.59 -16.43 14.53 5.24 0.08 -16.36 16 11 N -0.43 -11.55 3.00 -123.46 -0.37 -11.92 16 12 C 0.09 2.04 7.39 59.85 0.44 2.48 16 13 C -0.30 -8.59 9.23 -14.98 -0.14 -8.73 16 14 H 0.10 2.95 7.46 -52.49 -0.39 2.56 16 15 C 0.03 0.76 4.88 -17.46 -0.09 0.68 16 16 N -0.87 -23.42 11.01 55.50 0.61 -22.81 16 17 Si 0.92 20.65 29.59 -169.99 -5.03 15.62 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.12 2.21 6.40 -51.93 -0.33 1.88 16 28 H 0.20 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.17 2.86 4.56 -52.49 -0.24 2.62 16 30 H 0.05 1.04 6.59 -51.93 -0.34 0.70 16 31 H 0.10 2.35 5.67 -51.93 -0.29 2.05 16 32 H 0.03 0.60 6.42 -51.93 -0.33 0.26 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 276.23 15.07 4.16 4.16 Total: -1.00 -31.35 276.23 -5.16 -36.51 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.03 Total: 3.72 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.67 Total: -5.80 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.24 Total: -34.73 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.16 Total: -19.49 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.35 -5.16 -36.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281622755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.881 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds