Wall clock time and date at job start Sun Mar 29 2020 22:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 C 1.50704 * 109.47253 * 179.97438 * 3 2 1 5 5 O 1.33668 * 125.81047 * 270.18513 * 4 3 2 6 6 C 1.34220 * 110.91049 * 180.25589 * 5 4 3 7 7 C 1.34170 * 109.14236 * 359.74638 * 6 5 4 8 8 C 1.36494 * 125.80941 * 89.99908 * 4 3 2 9 9 C 1.47298 * 127.19633 * 0.03316 * 8 4 3 10 10 O 1.21640 * 120.00060 * 5.05990 * 9 8 4 11 11 N 1.34775 * 119.99918 * 185.34286 * 9 8 4 12 12 C 1.46509 * 119.99952 * 353.92907 * 11 9 8 13 13 C 1.36969 * 120.00330 * 173.93348 * 11 9 8 14 14 H 1.08001 * 119.99468 * 25.36146 * 13 11 9 15 15 C 1.38978 * 120.00040 * 205.36310 * 13 11 9 16 16 N 1.31408 * 120.00209 * 18.73129 * 15 13 11 17 17 Si 1.86798 * 119.99863 * 198.73078 * 15 13 11 18 18 H 1.48506 * 109.47001 * 90.00035 * 17 15 13 19 19 H 1.48501 * 109.47180 * 210.00157 * 17 15 13 20 20 H 1.48500 * 109.47306 * 329.99987 * 17 15 13 21 21 H 1.09002 * 109.46682 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47591 * 299.99902 * 1 2 3 23 23 H 1.09002 * 109.46911 * 59.99714 * 1 2 3 24 24 H 1.09000 * 109.47309 * 240.00610 * 2 1 3 25 25 H 1.09001 * 109.47257 * 119.99872 * 2 1 3 26 26 H 1.09003 * 109.47133 * 60.00358 * 3 2 1 27 27 H 1.09002 * 109.47577 * 299.99878 * 3 2 1 28 28 H 1.07997 * 125.43147 * 179.71074 * 6 5 4 29 29 H 1.08000 * 127.01745 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.46842 * 64.20272 * 12 11 9 31 31 H 1.09003 * 109.46767 * 184.20083 * 12 11 9 32 32 H 1.08994 * 109.47217 * 304.20209 * 12 11 9 33 33 H 0.96996 * 120.00037 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.3286 1.4393 1.0849 6 6 5.6258 1.4461 0.7404 7 6 5.7257 1.4485 -0.5976 8 6 4.3461 1.4425 -1.1060 9 6 3.9161 1.4429 -2.5148 10 8 2.7350 1.5364 -2.7902 11 7 4.8309 1.3340 -3.4985 12 6 6.2598 1.3492 -3.1751 13 6 4.4249 1.2093 -4.8007 14 1 3.4625 1.5932 -5.1053 15 6 5.2513 0.5888 -5.7299 16 7 6.2276 -0.1913 -5.3234 17 14 4.9744 0.8636 -7.5566 18 1 5.7660 2.0369 -8.0063 19 1 5.4048 -0.3419 -8.3095 20 1 3.5322 1.1144 -7.8065 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 6.4568 1.4497 1.4302 29 1 6.6340 1.4533 -1.1818 30 1 6.5044 0.4767 -2.5692 31 1 6.8412 1.3261 -4.0968 32 1 6.4968 2.2559 -2.6186 33 1 6.8041 -0.6247 -5.9720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281622755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:09 Heat of formation + Delta-G solvation = -33.353239 kcal Electronic energy + Delta-G solvation = -17053.749756 eV Core-core repulsion = 14273.986487 eV Total energy + Delta-G solvation = -2779.763268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.40684 -40.10822 -36.90294 -35.92678 -34.26235 -33.08776 -31.15491 -28.45167 -27.70912 -26.39411 -23.75638 -22.69867 -22.10448 -19.87767 -19.10615 -18.16243 -17.22665 -17.08852 -16.51270 -16.08356 -15.87180 -15.63811 -15.22852 -14.48426 -14.20745 -14.01960 -13.71810 -13.66725 -13.28633 -13.04052 -12.80810 -12.52981 -12.32304 -12.17829 -12.15417 -12.06445 -11.60235 -10.98324 -10.60866 -10.44577 -9.70193 -9.38258 -8.40808 -6.00887 0.52065 1.25057 1.40244 1.43975 1.53161 1.98283 2.26434 2.50235 3.08616 3.11356 3.69169 4.00749 4.06949 4.10161 4.18863 4.38335 4.53242 4.62000 4.76681 4.78931 4.85889 4.89232 4.95330 5.06143 5.26548 5.29114 5.31203 5.39301 5.42995 5.51535 6.06406 6.21244 6.48824 7.11422 7.40993 8.01744 8.63170 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.007727 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.325695 B = 3622.709245 C = 4399.971955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.039 4.039 4 C 0.045 3.955 5 O -0.177 6.177 6 C -0.028 4.028 7 C -0.227 4.227 8 C -0.245 4.245 9 C 0.501 3.499 10 O -0.624 6.624 11 N -0.451 5.451 12 C 0.100 3.900 13 C -0.347 4.347 14 H 0.073 0.927 15 C -0.002 4.002 16 N -0.889 5.889 17 Si 0.992 3.008 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.275 1.275 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.044 0.956 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.257 0.743 29 H 0.178 0.822 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 1.730 11.447 11.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.076 4.076 4 C -0.008 4.008 5 O -0.074 6.074 6 C -0.093 4.093 7 C -0.246 4.246 8 C -0.249 4.249 9 C 0.292 3.708 10 O -0.513 6.513 11 N -0.168 5.168 12 C -0.043 4.043 13 C -0.474 4.474 14 H 0.091 0.909 15 C -0.204 4.204 16 N -0.527 5.527 17 Si 0.815 3.185 18 H -0.187 1.187 19 H -0.197 1.197 20 H -0.200 1.200 21 H 0.085 0.915 22 H 0.097 0.903 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.124 0.876 27 H 0.104 0.896 28 H 0.272 0.728 29 H 0.195 0.805 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.314 1.646 11.480 11.602 hybrid contribution 0.296 -0.087 -1.380 1.414 sum -0.018 1.559 10.100 10.220 Atomic orbital electron populations 1.21696 0.93294 1.02570 1.02383 1.21393 0.97729 0.94591 1.01138 1.20380 0.83060 0.99533 1.04625 1.22880 0.94373 1.00604 0.82991 1.83702 1.17787 1.71627 1.34249 1.24729 0.83697 1.04609 0.96254 1.23901 0.96902 1.08041 0.95770 1.21499 0.95305 1.14564 0.93573 1.17782 0.85387 0.82786 0.84808 1.90499 1.18262 1.58007 1.84539 1.43579 1.06012 1.61715 1.05540 1.22064 0.81860 0.98508 1.01833 1.19639 1.05232 1.38061 0.84512 0.90936 1.26137 0.96069 0.93492 1.04687 1.70059 1.19553 1.26327 1.36758 0.84964 0.78676 0.78414 0.76458 1.18729 1.19672 1.19971 0.91535 0.90344 0.93659 0.95127 0.90693 0.87570 0.89629 0.72755 0.80515 0.93184 0.90164 0.92467 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.11 -3.49 5.92 30.59 0.18 -3.31 16 3 C -0.04 -1.31 5.28 29.85 0.16 -1.16 16 4 C 0.04 1.68 6.63 25.28 0.17 1.85 16 5 O -0.18 -5.54 10.52 4.27 0.04 -5.50 16 6 C -0.03 -0.74 12.03 66.89 0.80 0.06 16 7 C -0.23 -7.88 8.89 23.65 0.21 -7.67 16 8 C -0.24 -10.80 6.19 -19.00 -0.12 -10.92 16 9 C 0.50 27.36 7.61 86.63 0.66 28.02 16 10 O -0.62 -37.21 14.53 -4.16 -0.06 -37.27 16 11 N -0.45 -25.10 3.00 -662.74 -1.99 -27.08 16 12 C 0.10 4.66 7.39 127.77 0.94 5.60 16 13 C -0.35 -20.55 9.23 84.07 0.78 -19.78 16 14 H 0.07 4.57 7.46 -2.91 -0.02 4.55 16 15 C 0.00 -0.09 4.88 84.93 0.41 0.32 16 16 N -0.89 -48.11 11.01 21.67 0.24 -47.87 16 17 Si 0.99 42.84 29.59 68.60 2.03 44.87 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.09 3.43 6.40 -2.39 -0.02 3.42 16 28 H 0.26 3.65 8.06 -2.91 -0.02 3.62 16 29 H 0.18 5.69 4.56 -2.91 -0.01 5.68 16 30 H 0.05 2.25 6.59 -2.39 -0.02 2.23 16 31 H 0.08 3.96 5.67 -2.39 -0.01 3.95 16 32 H 0.06 2.29 6.42 -2.39 -0.02 2.27 16 33 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -71.83 276.23 6.29 -65.54 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.12 Total: 17.16 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 4.91 Total: -9.84 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -1.75 Total: -74.95 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.02 Total: -42.77 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -71.83 6.29 -65.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281622755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.185 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds