Wall clock time and date at job start Sun Mar 29 2020 22:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47106 * 95.40551 * 3 2 1 5 5 C 1.37099 * 120.00110 * 264.10265 * 4 3 2 6 6 H 1.08001 * 120.00142 * 142.33752 * 5 4 3 7 7 C 1.38945 * 120.00145 * 322.33707 * 5 4 3 8 8 N 1.31411 * 120.00484 * 158.37846 * 7 5 4 9 9 Si 1.86801 * 119.99943 * 338.38182 * 7 5 4 10 10 H 1.48507 * 109.47282 * 95.69453 * 9 7 5 11 11 H 1.48501 * 109.47462 * 215.69653 * 9 7 5 12 12 H 1.48500 * 109.47328 * 335.69793 * 9 7 5 13 13 C 1.34783 * 119.99893 * 84.10685 * 4 3 2 14 14 O 1.21286 * 119.99887 * 359.97438 * 13 4 3 15 15 C 1.50700 * 119.99705 * 179.97438 * 13 4 3 16 16 O 1.42898 * 109.46715 * 179.97438 * 15 13 4 17 17 C 1.42903 * 114.00067 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47084 * 180.02562 * 17 16 15 19 19 C 1.53005 * 117.49779 * 243.62071 * 18 17 16 20 20 C 1.52997 * 60.00079 * 252.51705 * 19 18 17 21 21 H 4.40639 * 5.51538 * 180.02562 * 4 1 2 22 22 H 1.08996 * 109.47149 * 335.40361 * 3 2 1 23 23 H 1.09000 * 109.47036 * 215.41047 * 3 2 1 24 24 H 0.96995 * 120.00391 * 179.97438 * 8 7 5 25 25 H 1.08999 * 109.47326 * 60.00207 * 15 13 4 26 26 H 1.08996 * 109.47566 * 299.99595 * 15 13 4 27 27 H 1.09005 * 109.46898 * 60.00089 * 17 16 15 28 28 H 1.08999 * 109.47371 * 300.00142 * 17 16 15 29 29 H 1.08995 * 115.55233 * 29.33383 * 18 17 16 30 30 H 1.09001 * 117.49901 * 0.02562 * 19 18 17 31 31 H 1.09002 * 117.49786 * 145.01912 * 19 18 17 32 32 H 1.09003 * 117.49522 * 252.51034 * 20 19 18 33 33 H 1.09001 * 117.50197 * 107.49144 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1310 -1.3750 5 6 3.4783 -0.9876 -2.0893 6 1 3.2556 -1.0442 -3.1445 7 6 4.1135 -2.0484 -1.4555 8 7 4.0685 -3.2512 -1.9829 9 14 5.0316 -1.7649 0.1465 10 1 4.1442 -2.0946 1.2907 11 1 6.2355 -2.6335 0.1875 12 1 5.4451 -0.3414 0.2349 13 6 3.2454 1.3506 -1.9380 14 8 2.9407 2.3401 -1.3062 15 6 3.7482 1.4846 -3.3523 16 8 3.7752 2.8654 -3.7192 17 6 4.2401 3.1044 -5.0492 18 6 4.2275 4.6082 -5.3314 19 6 3.2916 5.1127 -6.4316 20 6 4.8029 5.0809 -6.6680 21 1 -1.0500 0.0002 -0.0001 22 1 3.0098 -0.9336 0.4277 23 1 3.0090 0.8384 0.5955 24 1 4.5122 -3.9917 -1.5407 25 1 3.0850 0.9428 -4.0266 26 1 4.7540 1.0703 -3.4212 27 1 3.5876 2.5957 -5.7590 28 1 5.2563 2.7242 -5.1528 29 1 4.3771 5.2506 -4.4636 30 1 2.6846 4.3734 -6.9542 31 1 2.8250 6.0873 -6.2877 32 1 5.3307 6.0345 -6.6796 33 1 5.1904 4.3206 -7.3462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281623524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:48 Heat of formation + Delta-G solvation = 13.768488 kcal Electronic energy + Delta-G solvation = -16387.746560 eV Core-core repulsion = 13610.026643 eV Total energy + Delta-G solvation = -2777.719917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.07600 -37.94062 -36.19565 -35.05202 -32.71543 -31.70375 -28.79690 -26.90176 -25.49342 -24.33687 -22.42223 -20.66742 -19.20920 -18.47438 -16.91991 -16.72109 -15.98746 -15.60739 -15.39443 -14.88704 -14.34498 -14.05402 -13.79672 -13.15956 -12.98277 -12.77258 -12.27057 -11.77991 -11.67433 -11.54250 -11.05224 -10.91845 -10.78081 -10.47258 -10.25824 -10.12352 -9.83339 -9.45703 -9.29686 -9.15814 -8.61170 -8.02201 -6.59959 -4.21984 2.95708 3.13458 3.18145 3.21839 3.52341 3.58460 3.67833 3.94028 4.02629 4.63495 4.78782 4.88261 4.88906 5.11704 5.26415 5.40477 5.54561 5.59001 5.74740 5.81557 5.86207 5.94370 6.02714 6.04279 6.05690 6.23880 6.25444 6.53713 7.17837 7.54772 7.92997 8.10855 8.26929 8.83130 9.20247 9.54202 10.50364 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.006318 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.542047 B = 4430.925165 C = 4982.553015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.164 4.164 3 C 0.204 3.796 4 N -0.462 5.462 5 C -0.354 4.354 6 H 0.105 0.895 7 C 0.070 3.930 8 N -0.853 5.853 9 Si 0.868 3.132 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.256 1.256 13 C 0.489 3.511 14 O -0.572 6.572 15 C 0.066 3.934 16 O -0.368 6.368 17 C 0.091 3.909 18 C -0.148 4.148 19 C -0.179 4.179 20 C -0.177 4.177 21 H 0.212 0.788 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.277 0.723 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 7.941 -4.837 9.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.166 4.166 3 C 0.082 3.918 4 N -0.185 5.185 5 C -0.480 4.480 6 H 0.123 0.877 7 C -0.139 4.139 8 N -0.487 5.487 9 Si 0.694 3.306 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.180 1.180 13 C 0.278 3.722 14 O -0.454 6.454 15 C -0.013 4.013 16 O -0.286 6.286 17 C 0.014 3.986 18 C -0.166 4.166 19 C -0.216 4.216 20 C -0.214 4.214 21 H 0.229 0.771 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.744 8.367 -4.409 9.487 hybrid contribution 0.318 -0.545 0.516 0.815 sum 1.063 7.822 -3.893 8.802 Atomic orbital electron populations 1.24653 0.95622 1.03284 1.00995 1.23708 0.94884 0.98355 0.99613 1.18670 0.83992 1.02225 0.86876 1.43604 1.57250 1.05710 1.11899 1.19088 1.39758 0.93210 0.95982 0.87732 1.25340 0.95672 0.94546 0.98299 1.69759 1.39269 0.99109 1.40558 0.87057 0.80252 0.79997 0.83250 1.19749 1.20852 1.18000 1.20024 0.80790 0.82900 0.88464 1.90582 1.53125 1.37349 1.64389 1.22014 1.01951 0.82335 0.95008 1.87939 1.86960 1.24373 1.29357 1.21974 0.98240 0.93529 0.84830 1.22138 1.04832 0.96198 0.93425 1.23053 0.92706 1.02971 1.02849 1.22959 0.96510 1.02885 0.99001 0.77068 0.89010 0.89046 0.91232 0.91016 0.90190 0.93373 0.92955 0.86788 0.88709 0.88784 0.88617 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.41 19.25 29.55 0.57 -3.84 16 2 C -0.16 -3.67 13.62 -37.12 -0.51 -4.18 16 3 C 0.20 4.72 4.42 -6.83 -0.03 4.69 16 4 N -0.46 -11.36 2.15 -117.94 -0.25 -11.62 16 5 C -0.35 -9.06 9.06 -14.93 -0.14 -9.20 16 6 H 0.11 2.76 7.23 -52.49 -0.38 2.38 16 7 C 0.07 1.79 5.28 -17.47 -0.09 1.70 16 8 N -0.85 -22.85 13.96 55.50 0.77 -22.08 16 9 Si 0.87 19.53 24.99 -169.99 -4.25 15.28 16 10 H -0.27 -5.85 6.70 56.52 0.38 -5.48 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 13 C 0.49 11.93 7.65 -10.98 -0.08 11.85 16 14 O -0.57 -15.32 16.18 -14.36 -0.23 -15.55 16 15 C 0.07 1.35 5.11 36.01 0.18 1.54 16 16 O -0.37 -7.32 9.88 -55.14 -0.54 -7.87 16 17 C 0.09 1.37 6.22 37.16 0.23 1.60 16 18 C -0.15 -1.94 6.06 -90.61 -0.55 -2.49 16 19 C -0.18 -1.97 10.18 -26.73 -0.27 -2.24 16 20 C -0.18 -1.79 10.25 -26.73 -0.27 -2.06 16 21 H 0.21 3.07 7.80 -54.09 -0.42 2.65 16 22 H 0.09 2.10 3.55 -51.93 -0.18 1.91 16 23 H 0.09 2.03 7.61 -51.93 -0.39 1.63 16 24 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.07 1.39 7.67 -51.93 -0.40 0.99 16 26 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 27 H 0.05 0.66 7.88 -51.93 -0.41 0.26 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 292.05 15.07 4.40 4.40 Total: -1.00 -30.48 292.05 -5.36 -35.83 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.30 Total: 4.23 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -0.96 Total: -2.63 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.52 Total: -33.70 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.78 Total: -23.42 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.25 Total: 15.28 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.48 -5.36 -35.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281623524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.602 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds