Wall clock time and date at job start Sun Mar 29 2020 22:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47106 * 95.40551 * 3 2 1 5 5 C 1.37099 * 120.00110 * 264.10265 * 4 3 2 6 6 H 1.08001 * 120.00142 * 142.33752 * 5 4 3 7 7 C 1.38945 * 120.00145 * 322.33707 * 5 4 3 8 8 N 1.31411 * 120.00484 * 158.37846 * 7 5 4 9 9 Si 1.86801 * 119.99943 * 338.38182 * 7 5 4 10 10 H 1.48507 * 109.47282 * 95.69453 * 9 7 5 11 11 H 1.48501 * 109.47462 * 215.69653 * 9 7 5 12 12 H 1.48500 * 109.47328 * 335.69793 * 9 7 5 13 13 C 1.34783 * 119.99893 * 84.10685 * 4 3 2 14 14 O 1.21286 * 119.99887 * 359.97438 * 13 4 3 15 15 C 1.50700 * 119.99705 * 179.97438 * 13 4 3 16 16 O 1.42898 * 109.46715 * 179.97438 * 15 13 4 17 17 C 1.42903 * 114.00067 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47084 * 180.02562 * 17 16 15 19 19 C 1.53005 * 117.49779 * 243.62071 * 18 17 16 20 20 C 1.52997 * 60.00079 * 252.51705 * 19 18 17 21 21 H 4.40639 * 5.51538 * 180.02562 * 4 1 2 22 22 H 1.08996 * 109.47149 * 335.40361 * 3 2 1 23 23 H 1.09000 * 109.47036 * 215.41047 * 3 2 1 24 24 H 0.96995 * 120.00391 * 179.97438 * 8 7 5 25 25 H 1.08999 * 109.47326 * 60.00207 * 15 13 4 26 26 H 1.08996 * 109.47566 * 299.99595 * 15 13 4 27 27 H 1.09005 * 109.46898 * 60.00089 * 17 16 15 28 28 H 1.08999 * 109.47371 * 300.00142 * 17 16 15 29 29 H 1.08995 * 115.55233 * 29.33383 * 18 17 16 30 30 H 1.09001 * 117.49901 * 0.02562 * 19 18 17 31 31 H 1.09002 * 117.49786 * 145.01912 * 19 18 17 32 32 H 1.09003 * 117.49522 * 252.51034 * 20 19 18 33 33 H 1.09001 * 117.50197 * 107.49144 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1310 -1.3750 5 6 3.4783 -0.9876 -2.0893 6 1 3.2556 -1.0442 -3.1445 7 6 4.1135 -2.0484 -1.4555 8 7 4.0685 -3.2512 -1.9829 9 14 5.0316 -1.7649 0.1465 10 1 4.1442 -2.0946 1.2907 11 1 6.2355 -2.6335 0.1875 12 1 5.4451 -0.3414 0.2349 13 6 3.2454 1.3506 -1.9380 14 8 2.9407 2.3401 -1.3062 15 6 3.7482 1.4846 -3.3523 16 8 3.7752 2.8654 -3.7192 17 6 4.2401 3.1044 -5.0492 18 6 4.2275 4.6082 -5.3314 19 6 3.2916 5.1127 -6.4316 20 6 4.8029 5.0809 -6.6680 21 1 -1.0500 0.0002 -0.0001 22 1 3.0098 -0.9336 0.4277 23 1 3.0090 0.8384 0.5955 24 1 4.5122 -3.9917 -1.5407 25 1 3.0850 0.9428 -4.0266 26 1 4.7540 1.0703 -3.4212 27 1 3.5876 2.5957 -5.7590 28 1 5.2563 2.7242 -5.1528 29 1 4.3771 5.2506 -4.4636 30 1 2.6846 4.3734 -6.9542 31 1 2.8250 6.0873 -6.2877 32 1 5.3307 6.0345 -6.6796 33 1 5.1904 4.3206 -7.3462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281623524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:48 Heat of formation + Delta-G solvation = -4.208302 kcal Electronic energy + Delta-G solvation = -16388.526092 eV Core-core repulsion = 13610.026643 eV Total energy + Delta-G solvation = -2778.499449 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89687 -39.19164 -37.49878 -36.88114 -34.52068 -33.55673 -30.38043 -28.37682 -27.22435 -26.07070 -23.23725 -21.75872 -21.04609 -20.20599 -18.65911 -18.23066 -17.68093 -17.16846 -16.92207 -16.33671 -15.98125 -15.54126 -15.16918 -14.91176 -14.57347 -14.46954 -13.96369 -13.29960 -13.28328 -12.86661 -12.71042 -12.36703 -12.08029 -12.00679 -11.55464 -11.38048 -11.31336 -11.20732 -11.02104 -10.51708 -10.47047 -9.98253 -8.58176 -6.23675 1.16735 1.30474 1.42486 1.51661 1.75536 1.89226 2.14562 2.29549 2.83205 2.88789 3.20983 3.55434 3.89773 3.97488 4.02825 4.17634 4.20694 4.30397 4.34345 4.37435 4.49291 4.59154 4.70935 4.78267 5.01416 5.02684 5.22723 5.26157 5.28185 5.92646 6.10243 6.20911 6.66812 6.85819 7.25739 7.62403 8.55169 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.006318 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.542047 B = 4430.925165 C = 4982.553015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.235 4.235 3 C 0.200 3.800 4 N -0.466 5.466 5 C -0.357 4.357 6 H 0.090 0.910 7 C 0.037 3.963 8 N -0.885 5.885 9 Si 0.916 3.084 10 H -0.257 1.257 11 H -0.274 1.274 12 H -0.262 1.262 13 C 0.478 3.522 14 O -0.603 6.603 15 C 0.075 3.925 16 O -0.393 6.393 17 C 0.085 3.915 18 C -0.177 4.177 19 C -0.178 4.178 20 C -0.152 4.152 21 H 0.260 0.740 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.284 0.716 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.590 8.344 -5.211 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.236 4.236 3 C 0.079 3.921 4 N -0.188 5.188 5 C -0.483 4.483 6 H 0.107 0.893 7 C -0.169 4.169 8 N -0.521 5.521 9 Si 0.741 3.259 10 H -0.182 1.182 11 H -0.200 1.200 12 H -0.186 1.186 13 C 0.269 3.731 14 O -0.487 6.487 15 C -0.004 4.004 16 O -0.313 6.313 17 C 0.009 3.991 18 C -0.196 4.196 19 C -0.214 4.214 20 C -0.189 4.189 21 H 0.276 0.724 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.471 8.759 -4.789 9.994 hybrid contribution 0.306 -0.635 0.582 0.914 sum 0.776 8.124 -4.207 9.181 Atomic orbital electron populations 1.25743 0.96545 1.00005 0.97632 1.23891 0.95570 1.01431 1.02726 1.18644 0.85308 1.02131 0.86061 1.43718 1.57184 1.05496 1.12444 1.19009 1.40124 0.93557 0.95640 0.89288 1.25842 0.95917 0.94108 1.01031 1.69807 1.40212 0.99845 1.42230 0.86280 0.79543 0.79571 0.80531 1.18234 1.19958 1.18565 1.20696 0.80260 0.82387 0.89801 1.90544 1.54530 1.38124 1.65517 1.21873 1.02356 0.83276 0.92874 1.87911 1.87528 1.23645 1.32184 1.22257 0.98945 0.95154 0.82747 1.22097 1.08315 0.94754 0.94387 1.23167 0.93558 1.03352 1.01372 1.23080 0.95896 1.03653 0.96271 0.72425 0.89124 0.89072 0.90629 0.90152 0.89202 0.92254 0.91806 0.88354 0.88302 0.87918 0.86990 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.58 19.25 74.32 1.43 -5.15 16 2 C -0.23 -10.34 13.62 31.12 0.42 -9.91 16 3 C 0.20 9.28 4.42 84.57 0.37 9.65 16 4 N -0.47 -23.11 2.15 -645.43 -1.39 -24.50 16 5 C -0.36 -18.42 9.06 84.04 0.76 -17.65 16 6 H 0.09 4.78 7.23 -2.91 -0.02 4.76 16 7 C 0.04 1.90 5.28 84.93 0.45 2.35 16 8 N -0.89 -47.41 13.96 21.66 0.30 -47.11 16 9 Si 0.92 39.85 24.99 68.60 1.71 41.56 16 10 H -0.26 -10.51 6.70 99.48 0.67 -9.85 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.48 23.62 7.65 87.66 0.67 24.29 16 14 O -0.60 -32.79 16.18 15.99 0.26 -32.54 16 15 C 0.08 3.10 5.11 71.24 0.36 3.47 16 16 O -0.39 -15.74 9.88 -129.94 -1.28 -17.02 16 17 C 0.09 2.48 6.22 71.98 0.45 2.93 16 18 C -0.18 -4.49 6.06 -10.79 -0.07 -4.55 16 19 C -0.18 -3.60 10.18 30.60 0.31 -3.29 16 20 C -0.15 -2.71 10.25 30.59 0.31 -2.40 16 21 H 0.26 6.32 7.80 -4.42 -0.03 6.28 16 22 H 0.09 4.11 3.55 -2.39 -0.01 4.10 16 23 H 0.09 4.11 7.61 -2.39 -0.02 4.09 16 24 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 25 H 0.08 3.13 7.67 -2.39 -0.02 3.11 16 26 H 0.09 3.48 8.10 -2.39 -0.02 3.46 16 27 H 0.06 1.57 7.88 -2.38 -0.02 1.55 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.10 1.91 8.03 -2.39 -0.02 1.89 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -65.38 292.05 6.14 -59.24 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.06 Total: 20.64 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.48 Total: -0.27 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.09 Total: -71.61 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -1.02 Total: -49.55 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.71 Total: 41.56 kcal Total: -65.38 6.14 -59.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281623524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.031 kcal (2) G-P(sol) polarization free energy of solvation -65.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds