Wall clock time and date at job start Sun Mar 29 2020 22:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46503 * 119.99979 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 13 13 C 1.50702 * 109.47319 * 89.99673 * 12 10 8 14 14 H 1.07996 * 119.99528 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99825 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00032 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99664 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47146 * 89.99835 * 17 15 13 19 19 H 1.48496 * 109.47415 * 209.99880 * 17 15 13 20 20 H 1.48501 * 109.47412 * 329.99758 * 17 15 13 21 21 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 24 24 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 25 25 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 26 26 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 27 27 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 28 28 H 1.08995 * 109.47430 * 89.99888 * 11 10 8 29 29 H 1.09003 * 109.46760 * 210.00456 * 11 10 8 30 30 H 1.08998 * 109.46916 * 329.99662 * 11 10 8 31 31 H 1.09003 * 109.47421 * 210.00103 * 12 10 8 32 32 H 1.08999 * 109.47205 * 329.99628 * 12 10 8 33 33 H 0.96999 * 119.99585 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 2.0102 -2.5208 2.4513 12 6 1.4103 -4.6429 1.1961 13 6 2.6406 -5.5132 1.1999 14 1 3.6215 -5.0615 1.1964 15 6 2.5138 -6.8861 1.2078 16 7 1.3192 -7.4361 1.2126 17 14 4.0388 -7.9649 1.2132 18 1 4.4436 -8.2427 2.6147 19 1 3.7424 -9.2446 0.5208 20 1 5.1428 -7.2650 0.5086 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 0.8903 0.5134 23 1 -0.3633 -0.8898 0.5143 24 1 1.9895 2.1011 -0.0004 25 1 5.7911 -0.8249 -0.0010 26 1 4.9566 -2.1203 0.8899 27 1 4.9561 -2.1212 -0.8900 28 1 1.0713 -2.0642 2.7643 29 1 2.3451 -3.2230 3.2148 30 1 2.7639 -1.7452 2.3154 31 1 0.8179 -4.8472 2.0880 32 1 0.8159 -4.8580 0.3082 33 1 1.2300 -8.4020 1.2186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283838054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:18 Heat of formation + Delta-G solvation = -50.216076 kcal Electronic energy + Delta-G solvation = -17011.289952 eV Core-core repulsion = 14230.795457 eV Total energy + Delta-G solvation = -2780.494496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.50764 -40.40856 -36.63248 -35.04448 -34.54657 -33.40885 -30.10712 -28.97743 -27.61541 -27.16228 -25.46539 -23.01889 -20.75886 -19.97013 -18.69976 -18.37215 -17.59820 -16.98869 -16.64440 -16.27595 -15.90487 -15.03949 -14.60076 -14.25856 -14.19322 -14.07856 -13.87005 -13.76496 -13.55168 -13.50382 -13.26528 -13.15476 -12.84877 -12.56163 -12.25619 -12.23017 -11.74342 -10.99327 -10.65917 -10.34618 -9.53348 -9.38664 -8.23990 -6.39193 0.65841 1.28894 1.36754 1.40143 1.50163 1.61673 1.91912 2.32213 2.47116 3.05956 3.57394 3.70814 3.99815 4.22400 4.34231 4.39311 4.52473 4.60049 4.65901 4.74857 4.77431 4.84858 4.93973 4.98735 5.05372 5.17199 5.20960 5.50963 5.52646 5.78674 6.02359 6.11221 6.62585 6.70011 7.22305 7.37902 8.83849 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034007 B = 0.007048 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.165205 B = 3971.653188 C = 4389.776618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.175 4.175 3 C -0.019 4.019 4 O -0.171 6.171 5 C 0.035 3.965 6 C -0.079 4.079 7 C -0.246 4.246 8 C 0.578 3.422 9 O -0.596 6.596 10 N -0.596 5.596 11 C 0.088 3.912 12 C 0.259 3.741 13 C -0.544 4.544 14 H 0.057 0.943 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.970 3.030 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.270 1.270 21 H 0.067 0.933 22 H 0.106 0.894 23 H 0.042 0.958 24 H 0.256 0.744 25 H 0.113 0.887 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.027 0.973 32 H -0.003 1.003 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 18.094 2.590 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.176 4.176 3 C -0.085 4.085 4 O -0.067 6.067 5 C -0.017 4.017 6 C -0.135 4.135 7 C -0.250 4.250 8 C 0.366 3.634 9 O -0.478 6.478 10 N -0.326 5.326 11 C -0.054 4.054 12 C 0.138 3.862 13 C -0.583 4.583 14 H 0.075 0.925 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.794 3.206 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.195 1.195 21 H 0.086 0.914 22 H 0.125 0.875 23 H 0.061 0.939 24 H 0.272 0.728 25 H 0.131 0.869 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.016 0.984 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.978 17.789 2.105 18.349 hybrid contribution 0.032 -1.282 -0.200 1.298 sum 4.010 16.507 1.906 17.094 Atomic orbital electron populations 1.20195 0.87883 1.03234 1.02478 1.21628 0.97742 0.90207 1.08052 1.24402 0.78398 1.00544 1.05132 1.83727 1.30437 1.20851 1.71717 1.22678 0.95962 0.81258 1.01752 1.20477 0.91321 0.97849 1.03867 1.21123 0.95168 0.93084 1.15657 1.17861 0.76631 0.85663 0.83233 1.90716 1.54017 1.69470 1.33583 1.48112 1.65763 1.12339 1.06399 1.21779 1.01862 0.96950 0.84828 1.18837 0.95186 0.76301 0.95867 1.21677 0.93152 0.91908 1.51540 0.92517 1.25895 0.99653 0.99344 0.94262 1.70057 1.24211 1.11745 1.50846 0.85372 0.78719 0.77585 0.78900 1.18638 1.20659 1.19488 0.91445 0.87538 0.93892 0.72830 0.86857 0.89445 0.90610 0.91646 0.90706 0.90432 0.95453 0.98438 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.96 10.38 71.24 0.74 -1.22 16 2 C -0.17 -4.89 6.38 -18.49 -0.12 -5.00 16 3 C -0.02 -0.40 11.96 66.89 0.80 0.40 16 4 O -0.17 -4.26 10.52 4.51 0.05 -4.22 16 5 C 0.04 1.07 7.05 25.26 0.18 1.25 16 6 C -0.08 -2.08 10.18 71.24 0.72 -1.36 16 7 C -0.25 -8.91 4.32 -18.99 -0.08 -9.00 16 8 C 0.58 27.24 7.27 86.65 0.63 27.87 16 9 O -0.60 -34.40 16.69 -4.08 -0.07 -34.47 16 10 N -0.60 -27.50 2.86 -855.09 -2.44 -29.94 16 11 C 0.09 3.01 10.26 127.77 1.31 4.32 16 12 C 0.26 14.54 5.16 85.63 0.44 14.98 16 13 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 14 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 15 C 0.01 0.43 5.46 84.66 0.46 0.90 16 16 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 17 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 23 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.26 2.34 8.06 -2.91 -0.02 2.32 16 25 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 26 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 2.52 8.07 -2.39 -0.02 2.51 16 30 H 0.08 2.31 6.63 -2.39 -0.02 2.29 16 31 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 32 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -77.95 293.37 6.27 -71.68 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.10 Total: 5.04 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.33 Total: 1.46 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -2.16 Total: -86.50 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.02 Total: -38.69 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -77.95 6.27 -71.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283838054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.465 kcal (2) G-P(sol) polarization free energy of solvation -77.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds