Wall clock time and date at job start Sun Mar 29 2020 22:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 C 1.50701 * 109.47179 * 240.00062 * 2 1 3 5 5 C 1.40324 * 126.64763 * 59.68709 * 4 2 1 6 6 C 1.35168 * 107.12459 * 179.83708 * 5 4 2 7 7 O 1.33963 * 108.78178 * 0.42954 * 6 5 4 8 8 C 1.34918 * 109.37761 * 359.72759 * 7 6 5 9 9 C 1.46517 * 125.99498 * 180.02562 * 8 7 6 10 10 O 1.21740 * 120.00074 * 171.59269 * 9 8 7 11 11 N 1.34776 * 120.00150 * 351.58453 * 9 8 7 12 12 C 1.46487 * 120.00286 * 185.15527 * 11 9 8 13 13 C 1.36856 * 119.99635 * 5.15541 * 11 9 8 14 14 H 1.07994 * 120.00150 * 314.90699 * 13 11 9 15 15 C 1.39025 * 119.99666 * 134.90277 * 13 11 9 16 16 N 1.31390 * 120.00091 * 350.61155 * 15 13 11 17 17 Si 1.86804 * 119.99835 * 170.61099 * 15 13 11 18 18 H 1.48498 * 109.47214 * 60.00062 * 17 15 13 19 19 H 1.48495 * 109.47045 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46830 * 300.00123 * 17 15 13 21 21 H 1.08994 * 109.46867 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46673 * 60.00265 * 1 2 3 23 23 H 1.08998 * 109.47170 * 300.00009 * 1 2 3 24 24 H 1.09006 * 109.47413 * 120.00024 * 2 1 3 25 25 H 1.08993 * 109.47170 * 299.99967 * 3 2 1 26 26 H 1.08998 * 109.47106 * 59.99951 * 3 2 1 27 27 H 1.09001 * 109.46860 * 179.97438 * 3 2 1 28 28 H 1.07996 * 126.43837 * 0.02562 * 5 4 2 29 29 H 1.07998 * 125.60969 * 180.12209 * 6 5 4 30 30 H 1.09006 * 109.47535 * 356.35465 * 12 11 9 31 31 H 1.08999 * 109.47561 * 116.35999 * 12 11 9 32 32 H 1.09007 * 109.47344 * 236.36033 * 12 11 9 33 33 H 0.96996 * 119.99747 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.7758 -0.3582 -2.5644 6 6 2.4184 -1.2563 -3.3438 7 8 3.0442 -2.1412 -2.5563 8 6 2.8212 -1.8260 -1.2635 9 6 3.3352 -2.5519 -0.0992 10 8 3.1958 -2.0880 1.0176 11 7 3.9622 -3.7334 -0.2646 12 6 4.3757 -4.5132 0.9045 13 6 4.2126 -4.2046 -1.5249 14 1 3.4413 -4.1640 -2.2797 15 6 5.4599 -4.7356 -1.8334 16 7 6.4526 -4.6193 -0.9805 17 14 5.7244 -5.6143 -3.4604 18 1 5.4462 -4.6785 -4.5794 19 1 7.1305 -6.0838 -3.5465 20 1 4.8069 -6.7786 -3.5491 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.1797 0.4757 -2.9043 29 1 2.4223 -1.2627 -4.4237 30 1 4.1522 -3.9531 1.8125 31 1 3.8357 -5.4599 0.9194 32 1 5.4471 -4.7070 0.8517 33 1 7.3229 -4.9895 -1.1959 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283970851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:16 Heat of formation + Delta-G solvation = -26.059196 kcal Electronic energy + Delta-G solvation = -17338.688001 eV Core-core repulsion = 14559.241027 eV Total energy + Delta-G solvation = -2779.446975 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.86557 -38.20276 -35.77711 -34.56933 -31.56434 -31.08719 -29.17069 -26.74618 -26.33030 -24.74356 -22.17669 -21.59267 -19.62892 -18.96701 -17.67645 -15.94218 -15.50683 -15.28852 -14.69836 -14.37742 -14.09083 -13.60678 -13.40383 -12.96007 -12.76752 -12.36098 -11.92560 -11.88612 -11.83189 -11.22019 -11.16467 -10.97856 -10.81906 -10.68662 -10.51522 -10.40730 -10.33415 -9.19069 -9.01943 -8.65574 -7.86148 -7.43442 -6.34538 -4.20471 2.02147 3.01654 3.15287 3.18395 3.20589 3.71713 4.06399 4.32376 4.76983 5.02998 5.21243 5.32030 5.63535 5.66738 5.78507 5.95554 6.01169 6.10937 6.15164 6.29517 6.37601 6.53056 6.57439 6.67322 6.74511 6.84075 6.96522 7.13706 7.27228 7.53445 7.80365 7.90885 8.34363 9.01027 9.36299 9.79656 10.62248 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.008809 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.364725 B = 3177.847163 C = 3802.942929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.044 4.044 3 C -0.134 4.134 4 C -0.129 4.129 5 C -0.221 4.221 6 C -0.051 4.051 7 O -0.127 6.127 8 C -0.014 4.014 9 C 0.540 3.460 10 O -0.587 6.587 11 N -0.424 5.424 12 C 0.077 3.923 13 C -0.337 4.337 14 H 0.098 0.902 15 C 0.048 3.952 16 N -0.864 5.864 17 Si 0.924 3.076 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.271 1.271 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.110 0.890 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.140 0.860 29 H 0.194 0.806 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 5.241 -3.161 9.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.063 4.063 3 C -0.191 4.191 4 C -0.132 4.132 5 C -0.241 4.241 6 C -0.122 4.122 7 O -0.020 6.020 8 C -0.067 4.067 9 C 0.329 3.671 10 O -0.475 6.475 11 N -0.140 5.140 12 C -0.066 4.066 13 C -0.465 4.465 14 H 0.115 0.885 15 C -0.158 4.158 16 N -0.500 5.500 17 Si 0.750 3.250 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.197 1.197 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.128 0.872 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.157 0.843 29 H 0.211 0.789 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.378 5.075 -2.663 8.574 hybrid contribution 0.168 -0.314 -1.161 1.215 sum -6.210 4.761 -3.825 8.710 Atomic orbital electron populations 1.21755 0.95358 1.01404 1.00727 1.19843 0.94679 0.95303 0.96443 1.21729 1.01228 0.95562 1.00612 1.20324 1.01164 0.96524 0.95226 1.21410 1.06821 1.03140 0.92684 1.24230 0.98656 0.92321 0.96987 1.84621 1.56906 1.44535 1.15896 1.22207 1.03322 0.98552 0.82653 1.17049 0.83331 0.81242 0.85464 1.90616 1.64964 1.68366 1.23531 1.43255 1.48641 1.14978 1.07083 1.21772 1.03497 0.93674 0.87659 1.19545 0.97910 1.41430 0.87645 0.88476 1.25565 0.94538 0.96957 0.98787 1.69763 1.01795 1.42331 1.36106 0.86055 0.77458 0.79706 0.81821 1.19458 1.20795 1.19672 0.92966 0.93321 0.92965 0.87209 0.93392 0.92997 0.92781 0.84254 0.78939 0.92433 0.94557 0.88619 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.09 37.16 0.34 -1.67 16 2 C -0.04 -0.80 3.19 -91.77 -0.29 -1.09 16 3 C -0.13 -2.06 9.10 37.16 0.34 -1.72 16 4 C -0.13 -2.57 4.87 -104.40 -0.51 -3.08 16 5 C -0.22 -3.75 10.41 -39.89 -0.42 -4.16 16 6 C -0.05 -0.88 12.08 29.64 0.36 -0.52 16 7 O -0.13 -2.81 7.63 4.90 0.04 -2.77 16 8 C -0.01 -0.33 6.81 -36.81 -0.25 -0.58 16 9 C 0.54 14.10 7.59 -12.92 -0.10 14.00 16 10 O -0.59 -15.70 13.80 5.15 0.07 -15.63 16 11 N -0.42 -11.26 2.87 -123.76 -0.36 -11.62 16 12 C 0.08 1.88 10.18 59.84 0.61 2.49 16 13 C -0.34 -8.94 7.83 -15.02 -0.12 -9.05 16 14 H 0.10 2.53 6.14 -52.49 -0.32 2.20 16 15 C 0.05 1.25 5.28 -17.45 -0.09 1.15 16 16 N -0.86 -23.27 11.23 55.50 0.62 -22.65 16 17 Si 0.92 19.87 29.56 -169.99 -5.03 14.85 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.11 2.30 5.54 -51.93 -0.29 2.01 16 25 H 0.05 0.66 8.06 -51.93 -0.42 0.24 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 30 H 0.06 1.36 6.91 -51.93 -0.36 1.00 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.47 5.83 -51.92 -0.30 2.16 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 278.47 15.07 4.20 4.20 Total: -1.00 -29.66 278.47 -4.79 -34.44 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.20 Total: 3.41 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.13 Total: -4.23 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.27 Total: -34.26 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.11 Total: -18.40 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.66 -4.79 -34.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283970851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.384 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds