Wall clock time and date at job start Sun Mar 29 2020 22:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 C 1.50701 * 109.47179 * 240.00062 * 2 1 3 5 5 C 1.40324 * 126.64763 * 59.68709 * 4 2 1 6 6 C 1.35168 * 107.12459 * 179.83708 * 5 4 2 7 7 O 1.33963 * 108.78178 * 0.42954 * 6 5 4 8 8 C 1.34918 * 109.37761 * 359.72759 * 7 6 5 9 9 C 1.46517 * 125.99498 * 180.02562 * 8 7 6 10 10 O 1.21740 * 120.00074 * 171.59269 * 9 8 7 11 11 N 1.34776 * 120.00150 * 351.58453 * 9 8 7 12 12 C 1.46487 * 120.00286 * 185.15527 * 11 9 8 13 13 C 1.36856 * 119.99635 * 5.15541 * 11 9 8 14 14 H 1.07994 * 120.00150 * 314.90699 * 13 11 9 15 15 C 1.39025 * 119.99666 * 134.90277 * 13 11 9 16 16 N 1.31390 * 120.00091 * 350.61155 * 15 13 11 17 17 Si 1.86804 * 119.99835 * 170.61099 * 15 13 11 18 18 H 1.48498 * 109.47214 * 60.00062 * 17 15 13 19 19 H 1.48495 * 109.47045 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46830 * 300.00123 * 17 15 13 21 21 H 1.08994 * 109.46867 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46673 * 60.00265 * 1 2 3 23 23 H 1.08998 * 109.47170 * 300.00009 * 1 2 3 24 24 H 1.09006 * 109.47413 * 120.00024 * 2 1 3 25 25 H 1.08993 * 109.47170 * 299.99967 * 3 2 1 26 26 H 1.08998 * 109.47106 * 59.99951 * 3 2 1 27 27 H 1.09001 * 109.46860 * 179.97438 * 3 2 1 28 28 H 1.07996 * 126.43837 * 0.02562 * 5 4 2 29 29 H 1.07998 * 125.60969 * 180.12209 * 6 5 4 30 30 H 1.09006 * 109.47535 * 356.35465 * 12 11 9 31 31 H 1.08999 * 109.47561 * 116.35999 * 12 11 9 32 32 H 1.09007 * 109.47344 * 236.36033 * 12 11 9 33 33 H 0.96996 * 119.99747 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.7758 -0.3582 -2.5644 6 6 2.4184 -1.2563 -3.3438 7 8 3.0442 -2.1412 -2.5563 8 6 2.8212 -1.8260 -1.2635 9 6 3.3352 -2.5519 -0.0992 10 8 3.1958 -2.0880 1.0176 11 7 3.9622 -3.7334 -0.2646 12 6 4.3757 -4.5132 0.9045 13 6 4.2126 -4.2046 -1.5249 14 1 3.4413 -4.1640 -2.2797 15 6 5.4599 -4.7356 -1.8334 16 7 6.4526 -4.6193 -0.9805 17 14 5.7244 -5.6143 -3.4604 18 1 5.4462 -4.6785 -4.5794 19 1 7.1305 -6.0838 -3.5465 20 1 4.8069 -6.7786 -3.5491 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.1797 0.4757 -2.9043 29 1 2.4223 -1.2627 -4.4237 30 1 4.1522 -3.9531 1.8125 31 1 3.8357 -5.4599 0.9194 32 1 5.4471 -4.7070 0.8517 33 1 7.3229 -4.9895 -1.1959 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283970851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:16 Heat of formation + Delta-G solvation = -43.888185 kcal Electronic energy + Delta-G solvation = -17339.461124 eV Core-core repulsion = 14559.241027 eV Total energy + Delta-G solvation = -2780.220098 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.40603 -40.14770 -37.34149 -36.38463 -33.53926 -32.51853 -30.80058 -28.23194 -27.93885 -26.66177 -23.67148 -23.17334 -21.28082 -20.66896 -19.37840 -17.83878 -17.07730 -16.92293 -16.50722 -16.23842 -15.54923 -15.47462 -14.82897 -14.58039 -14.03695 -13.93849 -13.73787 -13.34817 -13.09080 -12.99295 -12.96326 -12.78299 -12.46277 -12.13323 -12.10653 -12.03889 -11.79895 -11.07278 -10.54189 -10.44019 -9.61591 -9.24982 -8.29022 -6.23137 0.38053 1.43177 1.45930 1.54910 1.63166 2.16463 2.30432 2.44361 2.96761 3.11891 3.85227 3.98485 4.18658 4.38249 4.43964 4.57144 4.68855 4.74447 4.81330 4.84765 4.91052 4.99714 5.12889 5.16566 5.25485 5.27902 5.44657 5.50798 5.59623 5.71555 5.96851 6.27563 6.38239 7.03387 7.40447 7.83251 8.68949 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.008809 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.364725 B = 3177.847163 C = 3802.942929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.054 4.054 3 C -0.127 4.127 4 C -0.111 4.111 5 C -0.220 4.220 6 C -0.033 4.033 7 O -0.155 6.155 8 C -0.079 4.079 9 C 0.529 3.471 10 O -0.611 6.611 11 N -0.444 5.444 12 C 0.082 3.918 13 C -0.352 4.352 14 H 0.098 0.902 15 C 0.003 3.997 16 N -0.899 5.899 17 Si 0.993 3.007 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.263 1.263 21 H 0.036 0.964 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.182 0.818 29 H 0.243 0.757 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.236 6.603 -5.663 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.184 4.184 4 C -0.115 4.115 5 C -0.239 4.239 6 C -0.102 4.102 7 O -0.049 6.049 8 C -0.131 4.131 9 C 0.320 3.680 10 O -0.500 6.500 11 N -0.161 5.161 12 C -0.061 4.061 13 C -0.479 4.479 14 H 0.115 0.885 15 C -0.200 4.200 16 N -0.536 5.536 17 Si 0.815 3.185 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.188 1.188 21 H 0.055 0.945 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.199 0.801 29 H 0.259 0.741 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.878 6.440 -5.153 11.406 hybrid contribution 0.546 -0.611 -0.392 0.908 sum -7.332 5.829 -5.546 10.885 Atomic orbital electron populations 1.21696 0.92623 1.01152 1.02964 1.19931 0.96944 0.96272 0.94065 1.21682 0.99833 0.94004 1.02924 1.20836 0.98504 0.94624 0.97514 1.21817 1.07126 1.04261 0.90704 1.25324 0.95866 0.90288 0.98761 1.84531 1.58236 1.46368 1.15776 1.21855 1.07523 1.00982 0.82708 1.17549 0.82766 0.81220 0.86490 1.90573 1.65717 1.68999 1.24755 1.43515 1.49404 1.15601 1.07531 1.21680 1.02712 0.94159 0.87536 1.19757 0.98425 1.41950 0.87801 0.88471 1.26489 0.93862 0.97318 1.02339 1.69885 1.02265 1.43384 1.38031 0.85009 0.77459 0.78661 0.77381 1.18537 1.20429 1.18751 0.94480 0.90849 0.90961 0.91128 0.90843 0.90929 0.94946 0.80065 0.74069 0.92642 0.93304 0.90042 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.09 71.98 0.65 -2.81 16 2 C -0.05 -1.87 3.19 -11.54 -0.04 -1.91 16 3 C -0.13 -3.62 9.10 71.98 0.65 -2.97 16 4 C -0.11 -4.32 4.87 -19.72 -0.10 -4.41 16 5 C -0.22 -6.63 10.41 22.07 0.23 -6.40 16 6 C -0.03 -1.01 12.08 67.11 0.81 -0.20 16 7 O -0.15 -6.76 7.63 -5.39 -0.04 -6.81 16 8 C -0.08 -3.74 6.81 24.06 0.16 -3.57 16 9 C 0.53 28.89 7.59 86.40 0.66 29.55 16 10 O -0.61 -34.51 13.80 -4.48 -0.06 -34.57 16 11 N -0.44 -24.63 2.87 -663.65 -1.91 -26.54 16 12 C 0.08 4.22 10.18 127.77 1.30 5.53 16 13 C -0.35 -19.08 7.83 84.10 0.66 -18.42 16 14 H 0.10 5.14 6.14 -2.91 -0.02 5.12 16 15 C 0.00 0.15 5.28 84.95 0.45 0.60 16 16 N -0.90 -49.63 11.23 21.68 0.24 -49.39 16 17 Si 0.99 40.52 29.56 68.60 2.03 42.55 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.07 1.64 8.05 -2.39 -0.02 1.62 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 3.05 5.54 -2.38 -0.01 3.03 16 25 H 0.07 1.71 8.06 -2.39 -0.02 1.69 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.24 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.05 2.79 6.91 -2.38 -0.02 2.77 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 4.42 5.83 -2.38 -0.01 4.40 16 33 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -67.69 278.47 6.81 -60.88 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.11 Total: 18.89 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 5.44 Total: -5.02 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -1.66 Total: -75.92 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -0.10 Total: -41.38 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -67.69 6.81 -60.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283970851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.991 kcal (2) G-P(sol) polarization free energy of solvation -67.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds