Wall clock time and date at job start Sun Mar 29 2020 22:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33680 * 125.81068 * 2 1 4 4 C 1.34212 * 110.91418 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.43027 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47063 * 300.02064 * 5 4 3 7 7 C 1.52999 * 109.46996 * 60.02215 * 5 4 3 8 8 C 1.34174 * 109.14276 * 359.97438 * 4 3 2 9 9 C 1.36497 * 125.81651 * 180.02562 * 2 1 3 10 10 C 1.47303 * 127.19139 * 359.97438 * 9 2 1 11 11 O 1.21637 * 119.99835 * 0.02562 * 10 9 2 12 12 N 1.34778 * 119.99764 * 180.02562 * 10 9 2 13 13 C 1.36958 * 119.99949 * 180.02562 * 12 10 9 14 14 H 1.08000 * 120.00205 * 359.97438 * 13 12 10 15 15 C 1.38976 * 120.00100 * 180.02562 * 13 12 10 16 16 N 1.31408 * 120.00104 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99951 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46802 * 90.00281 * 17 15 13 19 19 H 1.48502 * 109.47220 * 209.99983 * 17 15 13 20 20 H 1.48493 * 109.47363 * 330.00470 * 17 15 13 21 21 H 1.08998 * 109.47322 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47044 * 119.97497 * 1 2 3 23 23 H 1.08995 * 109.47316 * 239.97063 * 1 2 3 24 24 H 1.08998 * 109.46882 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.46452 * 59.99846 * 6 5 4 26 26 H 1.08988 * 109.46767 * 179.97438 * 6 5 4 27 27 H 1.08996 * 109.47068 * 300.00067 * 6 5 4 28 28 H 1.08997 * 109.47349 * 60.00369 * 7 5 4 29 29 H 1.09002 * 109.46956 * 180.02562 * 7 5 4 30 30 H 1.08998 * 109.47180 * 299.99664 * 7 5 4 31 31 H 1.08007 * 127.01901 * 179.73890 * 8 4 3 32 32 H 0.96998 * 119.99579 * 0.02562 * 12 10 9 33 33 H 0.97001 * 120.00022 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2891 1.0841 0.0000 4 6 3.5861 0.7391 -0.0006 5 6 4.7461 1.7012 -0.0013 6 6 4.6773 2.5820 -1.2504 7 6 4.6791 2.5817 1.2481 8 6 3.6855 -0.5990 -0.0004 9 6 2.3057 -1.1068 -0.0005 10 6 1.8752 -2.5156 -0.0006 11 8 0.6901 -2.7893 -0.0007 12 7 2.7946 -3.5011 -0.0006 13 6 2.3944 -4.8109 -0.0012 14 1 1.3421 -5.0541 -0.0013 15 6 3.3424 -5.8272 -0.0007 16 7 2.9584 -7.0839 -0.0018 17 14 5.1624 -5.4067 0.0002 18 1 5.6440 -5.2952 1.4005 19 1 5.9180 -6.4767 -0.6994 20 1 5.3722 -4.1139 -0.6997 21 1 -0.3634 1.0276 0.0005 22 1 -0.3633 -0.5135 -0.8902 23 1 -0.3634 -0.5143 0.8897 24 1 5.6818 1.1421 -0.0021 25 1 3.7415 3.1410 -1.2496 26 1 5.5159 3.2781 -1.2507 27 1 4.7250 1.9547 -2.1405 28 1 4.7281 1.9542 2.1380 29 1 5.5178 3.2779 1.2474 30 1 3.7434 3.1408 1.2488 31 1 4.5936 -1.1837 -0.0046 32 1 3.7396 -3.2827 -0.0001 33 1 3.6200 -7.7932 -0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285967061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:55 Heat of formation + Delta-G solvation = -40.232408 kcal Electronic energy + Delta-G solvation = -16618.038498 eV Core-core repulsion = 13837.976927 eV Total energy + Delta-G solvation = -2780.061571 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.21237 -38.07541 -35.69588 -34.03677 -32.50261 -31.66935 -30.87612 -27.32162 -26.71032 -24.94733 -22.30733 -21.68889 -20.32845 -19.08859 -17.60512 -16.47844 -15.99895 -15.40429 -14.85837 -14.68545 -14.27061 -13.51076 -13.40014 -13.22347 -13.04011 -12.77145 -12.51421 -12.47017 -12.30329 -12.07852 -11.76251 -11.36605 -11.24807 -11.24421 -10.93329 -10.60745 -10.00603 -9.65077 -9.25500 -8.62068 -8.21208 -8.00454 -6.36029 -3.82419 1.90065 2.42898 3.03468 3.03929 3.07167 3.13434 4.07611 4.29080 4.50240 4.71867 4.77762 4.96131 5.12599 5.30142 5.30545 5.42424 5.45004 5.60293 5.65308 5.70071 5.79673 5.90858 5.94181 6.05080 6.06562 6.15508 6.31712 6.53817 6.73186 7.42380 7.58446 8.13601 8.58509 8.91515 9.40568 9.84778 10.76551 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026122 B = 0.007216 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.643720 B = 3879.479416 C = 4760.061573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.041 3.959 3 O -0.177 6.177 4 C -0.015 4.015 5 C -0.011 4.011 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.192 4.192 9 C -0.205 4.205 10 C 0.514 3.486 11 O -0.580 6.580 12 N -0.574 5.574 13 C -0.301 4.301 14 H 0.123 0.877 15 C 0.042 3.958 16 N -0.875 5.875 17 Si 0.877 3.123 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.268 1.268 21 H 0.065 0.935 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.148 0.852 32 H 0.372 0.628 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.664 18.165 0.019 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.012 4.012 3 O -0.074 6.074 4 C -0.064 4.064 5 C -0.030 4.030 6 C -0.205 4.205 7 C -0.205 4.205 8 C -0.212 4.212 9 C -0.210 4.210 10 C 0.302 3.698 11 O -0.465 6.465 12 N -0.211 5.211 13 C -0.429 4.429 14 H 0.140 0.860 15 C -0.161 4.161 16 N -0.514 5.514 17 Si 0.703 3.297 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.194 1.194 21 H 0.084 0.916 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.116 0.884 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.205 0.795 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.841 18.002 0.017 18.642 hybrid contribution 1.720 -0.192 -0.016 1.730 sum 6.560 17.811 0.002 18.981 Atomic orbital electron populations 1.20301 0.84010 1.02140 1.05198 1.22604 0.93740 0.82861 1.01956 1.83591 1.16210 1.35219 1.72398 1.21963 0.82769 0.94194 1.07472 1.19732 0.92395 0.94181 0.96649 1.21863 1.02336 0.99447 0.96875 1.21864 1.02337 0.99448 0.96870 1.22651 0.97240 0.93484 1.07835 1.21537 0.92228 0.95225 1.11965 1.16666 0.86009 0.82723 0.84387 1.90627 1.16323 1.83479 1.56113 1.42055 1.07106 1.06536 1.65418 1.19491 0.97098 0.78928 1.47430 0.85986 1.25058 0.98597 0.94978 0.97499 1.69617 1.34696 0.98632 1.48504 0.86696 0.85165 0.78751 0.79090 1.19404 1.19942 1.19362 0.91627 0.88995 0.88988 0.88422 0.92114 0.91931 0.92154 0.92146 0.91934 0.92115 0.83443 0.79508 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 9.14 36.00 0.33 -0.60 16 2 C 0.04 0.74 7.38 -34.94 -0.26 0.48 16 3 O -0.18 -2.87 10.52 7.59 0.08 -2.79 16 4 C -0.02 -0.23 5.79 -35.74 -0.21 -0.44 16 5 C -0.01 -0.12 3.32 -91.77 -0.30 -0.43 16 6 C -0.15 -1.40 9.18 37.16 0.34 -1.05 16 7 C -0.15 -1.39 9.18 37.16 0.34 -1.05 16 8 C -0.19 -3.32 10.45 -37.45 -0.39 -3.71 16 9 C -0.20 -4.21 6.31 -103.28 -0.65 -4.86 16 10 C 0.51 12.81 7.76 -12.57 -0.10 12.72 16 11 O -0.58 -16.05 15.24 5.24 0.08 -15.97 16 12 N -0.57 -14.62 5.08 -11.99 -0.06 -14.68 16 13 C -0.30 -8.71 10.16 -14.99 -0.15 -8.86 16 14 H 0.12 3.97 7.38 -52.49 -0.39 3.59 16 15 C 0.04 1.18 5.50 -17.46 -0.10 1.08 16 16 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 17 Si 0.88 19.70 27.74 -169.99 -4.71 14.98 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.57 6.52 56.52 0.37 -5.20 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 23 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 24 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.46 8.14 -51.94 -0.42 0.04 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.15 2.29 7.74 -52.48 -0.41 1.89 16 32 H 0.37 8.48 4.93 -40.82 -0.20 8.28 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 287.04 15.07 4.33 4.33 Total: -1.00 -32.49 287.04 -5.04 -37.54 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -4.38 Total: 8.15 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.15 Total: -6.72 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.71 Total: -39.52 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.16 Total: -18.76 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.71 Total: 14.98 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.49 -5.04 -37.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285967061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.697 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds