Wall clock time and date at job start Sun Mar 29 2020 22:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33680 * 125.81068 * 2 1 4 4 C 1.34212 * 110.91418 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.43027 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47063 * 300.02064 * 5 4 3 7 7 C 1.52999 * 109.46996 * 60.02215 * 5 4 3 8 8 C 1.34174 * 109.14276 * 359.97438 * 4 3 2 9 9 C 1.36497 * 125.81651 * 180.02562 * 2 1 3 10 10 C 1.47303 * 127.19139 * 359.97438 * 9 2 1 11 11 O 1.21637 * 119.99835 * 0.02562 * 10 9 2 12 12 N 1.34778 * 119.99764 * 180.02562 * 10 9 2 13 13 C 1.36958 * 119.99949 * 180.02562 * 12 10 9 14 14 H 1.08000 * 120.00205 * 359.97438 * 13 12 10 15 15 C 1.38976 * 120.00100 * 180.02562 * 13 12 10 16 16 N 1.31408 * 120.00104 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99951 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46802 * 90.00281 * 17 15 13 19 19 H 1.48502 * 109.47220 * 209.99983 * 17 15 13 20 20 H 1.48493 * 109.47363 * 330.00470 * 17 15 13 21 21 H 1.08998 * 109.47322 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47044 * 119.97497 * 1 2 3 23 23 H 1.08995 * 109.47316 * 239.97063 * 1 2 3 24 24 H 1.08998 * 109.46882 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.46452 * 59.99846 * 6 5 4 26 26 H 1.08988 * 109.46767 * 179.97438 * 6 5 4 27 27 H 1.08996 * 109.47068 * 300.00067 * 6 5 4 28 28 H 1.08997 * 109.47349 * 60.00369 * 7 5 4 29 29 H 1.09002 * 109.46956 * 180.02562 * 7 5 4 30 30 H 1.08998 * 109.47180 * 299.99664 * 7 5 4 31 31 H 1.08007 * 127.01901 * 179.73890 * 8 4 3 32 32 H 0.96998 * 119.99579 * 0.02562 * 12 10 9 33 33 H 0.97001 * 120.00022 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2891 1.0841 0.0000 4 6 3.5861 0.7391 -0.0006 5 6 4.7461 1.7012 -0.0013 6 6 4.6773 2.5820 -1.2504 7 6 4.6791 2.5817 1.2481 8 6 3.6855 -0.5990 -0.0004 9 6 2.3057 -1.1068 -0.0005 10 6 1.8752 -2.5156 -0.0006 11 8 0.6901 -2.7893 -0.0007 12 7 2.7946 -3.5011 -0.0006 13 6 2.3944 -4.8109 -0.0012 14 1 1.3421 -5.0541 -0.0013 15 6 3.3424 -5.8272 -0.0007 16 7 2.9584 -7.0839 -0.0018 17 14 5.1624 -5.4067 0.0002 18 1 5.6440 -5.2952 1.4005 19 1 5.9180 -6.4767 -0.6994 20 1 5.3722 -4.1139 -0.6997 21 1 -0.3634 1.0276 0.0005 22 1 -0.3633 -0.5135 -0.8902 23 1 -0.3634 -0.5143 0.8897 24 1 5.6818 1.1421 -0.0021 25 1 3.7415 3.1410 -1.2496 26 1 5.5159 3.2781 -1.2507 27 1 4.7250 1.9547 -2.1405 28 1 4.7281 1.9542 2.1380 29 1 5.5178 3.2779 1.2474 30 1 3.7434 3.1408 1.2488 31 1 4.5936 -1.1837 -0.0046 32 1 3.7396 -3.2827 -0.0001 33 1 3.6200 -7.7932 -0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285967061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:55 Heat of formation + Delta-G solvation = -62.133476 kcal Electronic energy + Delta-G solvation = -16618.988200 eV Core-core repulsion = 13837.976927 eV Total energy + Delta-G solvation = -2781.011273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.56691 -40.07076 -36.61035 -36.09480 -34.12840 -33.60045 -32.17151 -28.24328 -28.01409 -26.75546 -23.90516 -22.69586 -21.84505 -21.11175 -19.35472 -17.92426 -17.33972 -17.05265 -16.55684 -15.87783 -15.46463 -15.41107 -15.12867 -14.61511 -14.29945 -14.17369 -13.95141 -13.84893 -13.68188 -13.05681 -12.99047 -12.90555 -12.48778 -12.14169 -12.11176 -12.03054 -11.82690 -11.61526 -10.73552 -10.65482 -10.32227 -9.36830 -8.48865 -6.06866 0.42437 1.05919 1.25092 1.33986 1.38926 1.75938 2.16788 2.38621 2.88745 3.18099 3.43306 3.84350 3.96570 4.06145 4.19938 4.25125 4.42941 4.62163 4.64262 4.68881 4.81487 4.86669 4.97232 5.00141 5.10440 5.23128 5.34892 5.37333 5.41461 5.49960 5.86831 6.11727 6.51453 6.77296 7.29888 7.84402 8.68074 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026122 B = 0.007216 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.643720 B = 3879.479416 C = 4760.061573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.052 3.948 3 O -0.169 6.169 4 C 0.004 3.996 5 C -0.013 4.013 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.209 4.209 9 C -0.247 4.247 10 C 0.515 3.485 11 O -0.619 6.619 12 N -0.575 5.575 13 C -0.331 4.331 14 H 0.063 0.937 15 C -0.009 4.009 16 N -0.924 5.924 17 Si 0.957 3.043 18 H -0.253 1.253 19 H -0.266 1.266 20 H -0.238 1.238 21 H 0.105 0.895 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.118 0.882 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.165 0.835 32 H 0.387 0.613 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.786 21.267 -0.003 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.001 4.001 3 O -0.066 6.066 4 C -0.045 4.045 5 C -0.031 4.031 6 C -0.203 4.203 7 C -0.203 4.203 8 C -0.228 4.228 9 C -0.251 4.251 10 C 0.305 3.695 11 O -0.507 6.507 12 N -0.214 5.214 13 C -0.460 4.460 14 H 0.081 0.919 15 C -0.208 4.208 16 N -0.563 5.563 17 Si 0.777 3.223 18 H -0.177 1.177 19 H -0.190 1.190 20 H -0.162 1.162 21 H 0.124 0.876 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.136 0.864 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.183 0.817 32 H 0.223 0.777 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.963 21.132 -0.006 22.582 hybrid contribution 0.619 -1.055 -0.005 1.223 sum 8.582 20.077 -0.011 21.834 Atomic orbital electron populations 1.20368 0.82704 1.04465 1.04213 1.22950 0.94720 0.82735 0.99677 1.83650 1.16912 1.34227 1.71797 1.22819 0.82995 0.94469 1.04200 1.20048 0.91012 0.94009 0.98040 1.21866 1.03277 0.99481 0.95701 1.21866 1.03273 0.99483 0.95698 1.22814 0.96180 0.94521 1.09288 1.21283 0.95018 0.93044 1.15780 1.17398 0.85435 0.84505 0.82165 1.90588 1.18137 1.84684 1.57240 1.41828 1.07982 1.05229 1.66355 1.19073 0.95067 0.81324 1.50500 0.91916 1.26071 1.04854 0.94149 0.95772 1.69775 1.37275 1.00138 1.49140 0.85475 0.76575 0.80035 0.80263 1.17748 1.19037 1.16161 0.87612 0.89959 0.89944 0.86391 0.92722 0.89185 0.92807 0.92773 0.89191 0.92727 0.81731 0.77705 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.86 9.14 71.23 0.65 -1.21 16 2 C 0.05 1.83 7.38 25.28 0.19 2.02 16 3 O -0.17 -5.06 10.52 4.25 0.04 -5.02 16 4 C 0.00 0.10 5.79 24.76 0.14 0.25 16 5 C -0.01 -0.22 3.32 -11.54 -0.04 -0.26 16 6 C -0.15 -2.15 9.18 71.98 0.66 -1.49 16 7 C -0.15 -2.15 9.18 71.98 0.66 -1.49 16 8 C -0.21 -6.73 10.45 23.65 0.25 -6.48 16 9 C -0.25 -10.05 6.31 -18.99 -0.12 -10.17 16 10 C 0.51 26.51 7.76 86.63 0.67 27.18 16 11 O -0.62 -36.19 15.24 -4.15 -0.06 -36.25 16 12 N -0.58 -29.91 5.08 -310.08 -1.58 -31.49 16 13 C -0.33 -20.14 10.16 84.07 0.85 -19.28 16 14 H 0.06 4.46 7.38 -2.91 -0.02 4.43 16 15 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 16 N -0.92 -55.95 13.96 21.67 0.30 -55.65 16 17 Si 0.96 39.85 27.74 68.60 1.90 41.76 16 18 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 19 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.24 -8.66 6.52 99.48 0.65 -8.01 16 21 H 0.11 2.29 8.14 -2.39 -0.02 2.28 16 22 H 0.08 2.67 8.08 -2.38 -0.02 2.65 16 23 H 0.08 2.67 8.08 -2.39 -0.02 2.65 16 24 H 0.12 1.64 8.09 -2.39 -0.02 1.62 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.17 4.60 7.74 -2.91 -0.02 4.58 16 32 H 0.39 17.29 4.93 -92.71 -0.46 16.83 16 33 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -75.52 287.04 5.59 -69.93 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.60 Total: 27.67 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 4.38 Total: -10.95 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -1.27 Total: -87.13 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -0.02 Total: -41.27 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.90 Total: 41.76 kcal Total: -75.52 5.59 -69.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285967061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.794 kcal (2) G-P(sol) polarization free energy of solvation -75.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds