Wall clock time and date at job start Sun Mar 29 2020 21:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50692 * 119.99524 * 2 1 4 4 N 1.46499 * 109.47068 * 125.00034 * 3 2 1 5 5 C 1.46493 * 120.00108 * 270.26998 * 4 3 2 6 6 C 1.50702 * 109.47427 * 269.72510 * 5 4 3 7 7 H 1.07999 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99945 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00264 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99887 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47118 * 90.00261 * 10 8 6 12 12 H 1.48499 * 109.47208 * 209.99867 * 10 8 6 13 13 H 1.48501 * 109.47153 * 330.00084 * 10 8 6 14 14 C 1.38545 * 120.00015 * 89.99738 * 4 3 2 15 15 N 1.32454 * 119.18507 * 179.72802 * 14 4 3 16 16 C 1.32298 * 120.76080 * 179.75993 * 15 14 4 17 17 C 1.38782 * 119.17002 * 0.50520 * 16 15 14 18 18 F 1.35104 * 120.74534 * 179.72735 * 17 16 15 19 19 C 1.38782 * 118.51042 * 359.74959 * 17 16 15 20 20 N 1.32304 * 119.16353 * 0.02562 * 19 17 16 21 21 H 1.07995 * 120.00099 * 0.02562 * 1 2 3 22 22 H 1.08007 * 119.99796 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.99959 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.47707 * 4.99647 * 3 2 1 25 25 H 1.09003 * 109.47176 * 244.99445 * 3 2 1 26 26 H 1.09002 * 109.47192 * 29.72647 * 5 4 3 27 27 H 1.09003 * 109.47700 * 149.72491 * 5 4 3 28 28 H 0.97007 * 119.99696 * 179.97438 * 9 8 6 29 29 H 1.08006 * 120.41554 * 180.23516 * 16 15 14 30 30 H 1.08000 * 120.41845 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5569 1.8594 2.4264 6 6 2.8430 3.3377 2.4891 7 1 3.3036 3.8347 1.6481 8 6 2.5156 4.0559 3.6196 9 7 1.9542 3.4509 4.6435 10 14 2.8696 5.8885 3.6969 11 1 1.6978 6.6412 3.1814 12 1 3.1310 6.2832 5.1044 13 1 4.0611 6.1980 2.8665 14 6 4.2847 0.8532 0.9782 15 7 5.1140 0.8902 2.0104 16 6 6.3521 0.4371 1.9002 17 6 6.7804 -0.0712 0.6819 18 9 8.0397 -0.5372 0.5323 19 6 5.8864 -0.0897 -0.3794 20 7 4.6611 0.3754 -0.1983 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9354 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3585 2.1316 0.0895 25 1 2.6213 1.4026 -0.9314 26 1 1.4865 1.6912 2.5450 27 1 3.0954 1.3510 3.2262 28 1 1.7243 3.9562 5.4390 29 1 7.0225 0.4665 2.7465 30 1 6.1873 -0.4781 -1.3411 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291668056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:36 Heat of formation + Delta-G solvation = 39.657047 kcal Electronic energy + Delta-G solvation = -16275.064724 eV Core-core repulsion = 13407.299865 eV Total energy + Delta-G solvation = -2867.764859 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.48346 -40.39118 -36.68128 -33.62374 -33.11584 -32.46580 -29.89007 -27.59802 -25.38730 -24.29595 -23.23596 -21.18981 -19.61213 -17.72510 -17.23186 -16.87460 -16.40990 -15.55461 -15.11691 -14.51074 -14.44609 -14.23597 -13.91090 -13.26509 -12.85724 -12.68203 -12.32954 -11.53969 -11.33498 -11.20031 -11.05101 -10.89035 -10.65723 -10.51621 -10.19512 -9.93682 -9.19350 -9.14226 -8.57608 -8.43851 -7.12159 -6.07948 -4.14296 1.45676 1.46556 2.48989 3.26786 3.33612 3.37114 3.54549 4.24914 4.39792 4.41783 4.55752 4.93929 5.20998 5.25408 5.26802 5.38450 5.50521 5.85618 5.92539 6.11705 6.28216 6.65297 6.87263 6.92845 7.02451 7.24553 7.41070 7.66491 7.85981 8.15824 8.17524 8.73133 8.92901 9.50350 10.98300 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.018291 B = 0.008659 C = 0.006386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.441321 B = 3232.750962 C = 4383.300840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.155 3.845 4 N -0.551 5.551 5 C 0.255 3.745 6 C -0.526 4.526 7 H 0.056 0.944 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.563 3.437 15 N -0.521 5.521 16 C 0.175 3.825 17 C -0.110 4.110 18 F -0.140 7.140 19 C 0.170 3.830 20 N -0.561 5.561 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.264 0.736 29 H 0.169 0.831 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.655 -6.797 -8.327 11.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C 0.031 3.969 4 N -0.260 5.260 5 C 0.136 3.864 6 C -0.565 4.565 7 H 0.074 0.926 8 C -0.138 4.138 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.208 3.792 15 N -0.241 5.241 16 C 0.003 3.997 17 C -0.139 4.139 18 F -0.120 7.120 19 C -0.001 4.001 20 N -0.285 5.285 21 H 0.116 0.884 22 H 0.111 0.889 23 H 0.121 0.879 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.186 0.814 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.364 -6.279 -7.966 10.415 hybrid contribution 1.325 0.583 0.056 1.449 sum 3.688 -5.696 -7.910 10.422 Atomic orbital electron populations 1.23787 0.95784 1.01637 1.01566 1.23373 0.96041 0.99206 0.98926 1.20510 0.91791 0.94890 0.89710 1.47012 1.05304 1.59569 1.14128 1.19443 0.95497 0.93940 0.77496 1.21398 1.40651 0.93171 1.01239 0.92554 1.24896 0.95016 0.98636 0.95299 1.69932 1.41841 1.36158 1.05234 0.86513 0.78631 0.85047 0.77321 1.20634 1.21056 1.19980 1.19505 0.87895 0.87613 0.84167 1.68212 1.03099 1.21029 1.31803 1.23123 0.92196 0.89031 0.95379 1.19039 0.83008 1.13108 0.98770 1.91433 1.36826 1.87390 1.96308 1.22881 0.87419 0.91885 0.97908 1.67983 1.17589 1.18819 1.24094 0.88359 0.88869 0.87932 0.89564 0.89601 0.94613 0.93106 0.92663 0.81373 0.81592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 14.32 29.01 0.42 -2.24 16 2 C -0.16 -2.47 9.85 -36.03 -0.35 -2.83 16 3 C 0.15 2.77 5.85 -5.20 -0.03 2.74 16 4 N -0.55 -11.86 2.54 -178.77 -0.45 -12.31 16 5 C 0.26 6.44 5.16 -5.20 -0.03 6.42 16 6 C -0.53 -14.41 9.39 -34.44 -0.32 -14.73 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 10 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.56 11.72 8.18 -322.72 -2.64 9.08 16 15 N -0.52 -10.98 9.12 -13.86 -0.13 -11.10 16 16 C 0.18 2.97 11.29 -17.15 -0.19 2.77 16 17 C -0.11 -1.69 7.38 -39.18 -0.29 -1.98 16 18 F -0.14 -2.01 17.30 2.25 0.04 -1.98 16 19 C 0.17 2.55 11.29 -17.15 -0.19 2.36 16 20 N -0.56 -10.12 9.11 -13.86 -0.13 -10.24 16 21 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 22 H 0.09 1.13 8.06 -52.48 -0.42 0.71 16 23 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 24 H 0.09 1.55 7.73 -51.93 -0.40 1.15 16 25 H 0.09 1.46 7.33 -51.93 -0.38 1.08 16 26 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 27 H 0.05 1.40 7.34 -51.93 -0.38 1.02 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.17 2.32 8.06 -52.48 -0.42 1.89 16 30 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 277.04 15.07 4.17 4.17 Total: -1.00 -29.75 277.04 -7.74 -37.49 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -3.23 Total: -0.71 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -3.73 Total: 3.25 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.03 Total: -58.63 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.75 -7.74 -37.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291668056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.151 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds