Wall clock time and date at job start Sun Mar 29 2020 21:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50692 * 119.99524 * 2 1 4 4 N 1.46499 * 109.47068 * 125.00034 * 3 2 1 5 5 C 1.46493 * 120.00108 * 270.26998 * 4 3 2 6 6 C 1.50702 * 109.47427 * 269.72510 * 5 4 3 7 7 H 1.07999 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99945 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00264 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99887 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47118 * 90.00261 * 10 8 6 12 12 H 1.48499 * 109.47208 * 209.99867 * 10 8 6 13 13 H 1.48501 * 109.47153 * 330.00084 * 10 8 6 14 14 C 1.38545 * 120.00015 * 89.99738 * 4 3 2 15 15 N 1.32454 * 119.18507 * 179.72802 * 14 4 3 16 16 C 1.32298 * 120.76080 * 179.75993 * 15 14 4 17 17 C 1.38782 * 119.17002 * 0.50520 * 16 15 14 18 18 F 1.35104 * 120.74534 * 179.72735 * 17 16 15 19 19 C 1.38782 * 118.51042 * 359.74959 * 17 16 15 20 20 N 1.32304 * 119.16353 * 0.02562 * 19 17 16 21 21 H 1.07995 * 120.00099 * 0.02562 * 1 2 3 22 22 H 1.08007 * 119.99796 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.99959 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.47707 * 4.99647 * 3 2 1 25 25 H 1.09003 * 109.47176 * 244.99445 * 3 2 1 26 26 H 1.09002 * 109.47192 * 29.72647 * 5 4 3 27 27 H 1.09003 * 109.47700 * 149.72491 * 5 4 3 28 28 H 0.97007 * 119.99696 * 179.97438 * 9 8 6 29 29 H 1.08006 * 120.41554 * 180.23516 * 16 15 14 30 30 H 1.08000 * 120.41845 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5569 1.8594 2.4264 6 6 2.8430 3.3377 2.4891 7 1 3.3036 3.8347 1.6481 8 6 2.5156 4.0559 3.6196 9 7 1.9542 3.4509 4.6435 10 14 2.8696 5.8885 3.6969 11 1 1.6978 6.6412 3.1814 12 1 3.1310 6.2832 5.1044 13 1 4.0611 6.1980 2.8665 14 6 4.2847 0.8532 0.9782 15 7 5.1140 0.8902 2.0104 16 6 6.3521 0.4371 1.9002 17 6 6.7804 -0.0712 0.6819 18 9 8.0397 -0.5372 0.5323 19 6 5.8864 -0.0897 -0.3794 20 7 4.6611 0.3754 -0.1983 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9354 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3585 2.1316 0.0895 25 1 2.6213 1.4026 -0.9314 26 1 1.4865 1.6912 2.5450 27 1 3.0954 1.3510 3.2262 28 1 1.7243 3.9562 5.4390 29 1 7.0225 0.4665 2.7465 30 1 6.1873 -0.4781 -1.3411 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291668056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:36 Heat of formation + Delta-G solvation = 24.365717 kcal Electronic energy + Delta-G solvation = -16275.727805 eV Core-core repulsion = 13407.299865 eV Total energy + Delta-G solvation = -2868.427940 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.71934 -41.80694 -38.19578 -35.22905 -34.62669 -34.12470 -31.38586 -29.37094 -26.92351 -25.68830 -24.96984 -22.75973 -20.86679 -19.13455 -18.78263 -18.43394 -18.12434 -16.87768 -16.74423 -16.08544 -15.83657 -15.72883 -15.18292 -14.71994 -14.45317 -14.09466 -13.94557 -13.29163 -13.07671 -12.71149 -12.60567 -12.53522 -12.33380 -12.14945 -11.94557 -11.71842 -10.79300 -10.61410 -10.36885 -9.92518 -8.71043 -8.14010 -6.32704 0.07787 0.16192 1.25487 1.38425 1.39736 1.50116 2.08114 2.40271 2.84624 3.10282 3.10984 3.27056 3.62998 3.93621 3.98361 4.10702 4.22822 4.53648 4.67153 4.83002 5.01339 5.05859 5.23979 5.45483 5.63031 5.69307 5.78621 5.90522 6.04956 6.13512 6.58153 6.76447 7.29357 7.40680 8.87227 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.018291 B = 0.008659 C = 0.006386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.441321 B = 3232.750962 C = 4383.300840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.175 4.175 3 C 0.157 3.843 4 N -0.566 5.566 5 C 0.279 3.721 6 C -0.535 4.535 7 H 0.046 0.954 8 C 0.016 3.984 9 N -0.924 5.924 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.276 1.276 14 C 0.546 3.454 15 N -0.567 5.567 16 C 0.165 3.835 17 C -0.093 4.093 18 F -0.129 7.129 19 C 0.175 3.825 20 N -0.562 5.562 21 H 0.102 0.898 22 H 0.117 0.883 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.267 0.733 29 H 0.193 0.807 30 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 -6.939 -9.586 12.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C 0.035 3.965 4 N -0.278 5.278 5 C 0.158 3.842 6 C -0.574 4.574 7 H 0.064 0.936 8 C -0.184 4.184 9 N -0.563 5.563 10 Si 0.787 3.213 11 H -0.194 1.194 12 H -0.205 1.205 13 H -0.201 1.201 14 C 0.191 3.809 15 N -0.289 5.289 16 C -0.005 4.005 17 C -0.121 4.121 18 F -0.108 7.108 19 C 0.005 3.995 20 N -0.285 5.285 21 H 0.120 0.880 22 H 0.135 0.865 23 H 0.119 0.881 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.210 0.790 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.134 -6.449 -9.255 11.708 hybrid contribution 1.207 0.522 0.393 1.373 sum 4.341 -5.927 -8.862 11.512 Atomic orbital electron populations 1.24025 0.95191 1.02955 0.98639 1.23207 0.96582 0.98091 1.01561 1.20568 0.91371 0.95814 0.88736 1.46816 1.06546 1.60820 1.13585 1.18815 0.93793 0.92720 0.78915 1.21592 1.40419 0.94387 1.01000 0.93605 1.25696 0.94753 1.03009 0.94909 1.70036 1.42677 1.37857 1.05768 0.85512 0.78598 0.79841 0.77394 1.19411 1.20477 1.20077 1.19620 0.87667 0.88455 0.85150 1.68168 1.04819 1.23025 1.32917 1.23547 0.91345 0.88534 0.97049 1.18978 0.83304 1.11598 0.98239 1.91474 1.36055 1.87052 1.96190 1.23616 0.86108 0.90276 0.99488 1.68046 1.18918 1.18856 1.22690 0.88005 0.86486 0.88083 0.90414 0.88979 0.96336 0.96205 0.92417 0.79001 0.77123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.55 14.32 67.78 0.97 -3.58 16 2 C -0.17 -5.48 9.85 25.64 0.25 -5.23 16 3 C 0.16 5.70 5.85 85.63 0.50 6.20 16 4 N -0.57 -25.00 2.54 -719.51 -1.83 -26.83 16 5 C 0.28 14.63 5.16 85.64 0.44 15.07 16 6 C -0.54 -30.04 9.39 25.60 0.24 -29.80 16 7 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 8 C 0.02 0.88 5.46 84.65 0.46 1.34 16 9 N -0.92 -54.10 13.29 21.45 0.28 -53.81 16 10 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 C 0.55 22.87 8.18 261.45 2.14 25.01 16 15 N -0.57 -24.21 9.12 -197.77 -1.80 -26.01 16 16 C 0.17 5.44 11.29 84.75 0.96 6.40 16 17 C -0.09 -2.63 7.38 22.53 0.17 -2.46 16 18 F -0.13 -3.28 17.30 44.97 0.78 -2.51 16 19 C 0.17 4.78 11.29 84.75 0.96 5.74 16 20 N -0.56 -19.57 9.11 -197.77 -1.80 -21.37 16 21 H 0.10 2.64 7.84 -2.91 -0.02 2.62 16 22 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 23 H 0.10 3.18 8.06 -2.91 -0.02 3.16 16 24 H 0.08 2.86 7.73 -2.39 -0.02 2.84 16 25 H 0.09 3.13 7.33 -2.39 -0.02 3.11 16 26 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 27 H 0.02 1.15 7.34 -2.39 -0.02 1.14 16 28 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 29 H 0.19 5.07 8.06 -2.91 -0.02 5.05 16 30 H 0.21 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -64.59 277.04 5.88 -58.71 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.14 Total: 6.97 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 7.09 Total: 18.69 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -5.15 Total: -128.02 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.78 Total: -2.51 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -64.59 5.88 -58.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291668056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.073 kcal (2) G-P(sol) polarization free energy of solvation -64.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds