Wall clock time and date at job start Sun Mar 29 2020 22:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00543 * 2 1 4 4 N 1.46500 * 109.47410 * 124.99658 * 3 2 1 5 5 C 1.46497 * 119.99724 * 270.00176 * 4 3 2 6 6 C 1.50700 * 109.47253 * 269.99631 * 5 4 3 7 7 H 1.08003 * 119.99790 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00170 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99939 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47091 * 60.00010 * 10 8 6 12 12 H 1.48499 * 109.47072 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47306 * 300.00088 * 10 8 6 14 14 C 1.34766 * 119.99865 * 89.99920 * 4 3 2 15 15 O 1.21281 * 120.00146 * 179.97438 * 14 4 3 16 16 C 1.50702 * 120.00269 * 0.02562 * 14 4 3 17 17 C 1.53840 * 113.66024 * 80.99799 * 16 14 4 18 18 C 1.51772 * 86.69146 * 89.81077 * 17 16 14 19 19 O 1.20761 * 135.75309 * 205.16017 * 18 17 16 20 20 C 1.51582 * 88.46571 * 25.08000 * 18 17 16 21 21 H 1.07996 * 120.00560 * 179.97438 * 1 2 3 22 22 H 1.08004 * 119.99764 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.99764 * 179.97438 * 2 1 3 24 24 H 1.09010 * 109.46487 * 4.99624 * 3 2 1 25 25 H 1.08997 * 109.47225 * 245.00315 * 3 2 1 26 26 H 1.09001 * 109.47521 * 30.00205 * 5 4 3 27 27 H 1.09001 * 109.47026 * 149.99811 * 5 4 3 28 28 H 0.96999 * 120.00281 * 179.97438 * 9 8 6 29 29 H 1.09002 * 112.88026 * 309.66550 * 16 14 4 30 30 H 1.08997 * 113.67238 * 204.24843 * 17 16 14 31 31 H 1.09009 * 113.66355 * 335.31495 * 17 16 14 32 32 H 1.09004 * 113.66715 * 220.46248 * 20 18 17 33 33 H 1.08995 * 113.67024 * 89.38510 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1315 5 6 2.5589 1.8649 2.4248 6 6 2.8444 3.3436 2.4803 7 1 3.3035 3.8370 1.6364 8 6 2.5194 4.0666 3.6085 9 7 1.9608 3.4657 4.6363 10 14 2.8727 5.8996 3.6770 11 1 2.1361 6.5868 2.5860 12 1 2.4330 6.4398 4.9885 13 1 4.3304 6.1294 3.5112 14 6 4.2497 0.8660 0.9825 15 8 5.0199 0.8886 1.9190 16 6 4.6973 0.3181 -0.3481 17 6 5.1070 1.4048 -1.3570 18 6 6.5089 1.2796 -0.7889 19 8 7.4766 1.9973 -0.7076 20 6 6.1672 -0.1355 -0.3662 21 1 -0.5401 -0.9352 -0.0004 22 1 -0.5400 0.9354 -0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6214 1.4025 -0.9314 26 1 1.4888 1.6967 2.5459 27 1 3.0989 1.3603 3.2260 28 1 1.7325 3.9743 5.4301 29 1 4.0068 -0.4199 -0.7565 30 1 5.0266 1.0890 -2.3971 31 1 4.6428 2.3731 -1.1697 32 1 6.5543 -0.4040 0.6168 33 1 6.3847 -0.8843 -1.1278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292555127.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:01 Heat of formation + Delta-G solvation = -23.455540 kcal Electronic energy + Delta-G solvation = -16931.576542 eV Core-core repulsion = 14152.242470 eV Total energy + Delta-G solvation = -2779.334072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49095 -38.44428 -35.96147 -35.47803 -33.20656 -32.09329 -28.01048 -26.09389 -25.76005 -24.75290 -22.30971 -20.07610 -19.45869 -17.95965 -16.66476 -16.52671 -16.08129 -15.53441 -15.08512 -14.88217 -14.62011 -14.26779 -13.91620 -13.05129 -12.82581 -12.54361 -12.17266 -11.86245 -11.68934 -11.45872 -11.24469 -11.14410 -11.02168 -10.92543 -10.59240 -10.20560 -9.69630 -9.33446 -9.22559 -9.01950 -8.44598 -7.76624 -6.06068 -4.11135 2.04574 2.39379 3.18415 3.31553 3.36171 3.40495 3.82134 3.92001 4.43270 4.47193 4.81010 4.88205 5.15165 5.23372 5.28354 5.35118 5.37009 5.47552 5.57208 5.70797 5.87873 5.97167 6.01716 6.14206 6.74157 6.85761 7.03045 7.40401 7.48527 7.59863 7.89619 8.20088 8.32095 8.84552 8.99907 9.54068 11.02014 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.009098 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.386487 B = 3076.998070 C = 4087.331775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.169 4.169 3 C 0.134 3.866 4 N -0.588 5.588 5 C 0.247 3.753 6 C -0.529 4.529 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.515 3.485 15 O -0.534 6.534 16 C -0.129 4.129 17 C -0.182 4.182 18 C 0.366 3.634 19 O -0.426 6.426 20 C -0.176 4.176 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.105 0.895 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 -8.179 -13.764 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.010 3.990 4 N -0.318 5.318 5 C 0.128 3.872 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.301 3.699 15 O -0.411 6.411 16 C -0.151 4.151 17 C -0.220 4.220 18 C 0.239 3.761 19 O -0.297 6.297 20 C -0.214 4.214 21 H 0.112 0.888 22 H 0.117 0.883 23 H 0.123 0.877 24 H 0.106 0.894 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.208 -7.710 -12.988 15.105 hybrid contribution -0.187 0.901 0.157 0.934 sum 0.021 -6.809 -12.830 14.525 Atomic orbital electron populations 1.23831 0.95869 1.01804 1.00400 1.23417 0.96397 0.98976 1.00063 1.20638 0.93122 0.95439 0.89790 1.48173 1.10227 1.59672 1.13713 1.19302 0.95476 0.93792 0.78607 1.21374 1.40794 0.93271 1.01318 0.92550 1.24922 0.94971 0.98784 0.95302 1.69917 1.41892 1.36305 1.05136 0.86574 0.78934 0.84855 0.77192 1.20201 1.21120 1.20123 1.19787 0.82642 0.78834 0.88661 1.90702 1.52614 1.56132 1.41665 1.22180 0.97862 0.99595 0.95435 1.24087 0.96428 1.01069 1.00416 1.25617 0.86705 0.89897 0.73865 1.90402 1.35002 1.56095 1.48200 1.23922 0.94360 0.97972 1.05107 0.88752 0.88276 0.87724 0.89388 0.90523 0.94817 0.93859 0.92623 0.86777 0.85782 0.88319 0.87486 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.01 0.42 -1.77 16 2 C -0.17 -2.21 9.61 -36.03 -0.35 -2.56 16 3 C 0.13 2.03 5.56 -5.20 -0.03 2.00 16 4 N -0.59 -11.95 2.44 -176.44 -0.43 -12.38 16 5 C 0.25 6.39 5.16 -5.20 -0.03 6.36 16 6 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 7 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 10 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 C 0.52 10.28 6.93 -10.99 -0.08 10.20 16 15 O -0.53 -13.30 15.41 5.56 0.09 -13.22 16 16 C -0.13 -1.72 3.01 -90.98 -0.27 -1.99 16 17 C -0.18 -2.16 6.69 -26.92 -0.18 -2.34 16 18 C 0.37 5.60 8.82 -28.16 -0.25 5.35 16 19 O -0.43 -8.14 17.99 6.00 0.11 -8.03 16 20 C -0.18 -2.19 7.44 -27.01 -0.20 -2.40 16 21 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 22 H 0.10 1.19 7.84 -52.48 -0.41 0.78 16 23 H 0.10 1.25 7.86 -52.48 -0.41 0.83 16 24 H 0.09 1.41 7.72 -51.92 -0.40 1.01 16 25 H 0.08 0.93 5.88 -51.93 -0.31 0.63 16 26 H 0.03 0.88 8.07 -51.93 -0.42 0.47 16 27 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.11 1.14 7.49 -51.93 -0.39 0.75 16 30 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.32 7.90 -51.92 -0.41 0.91 16 32 H 0.11 1.58 7.40 -51.93 -0.38 1.20 16 33 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 290.42 15.07 4.38 4.38 Total: -1.00 -34.69 290.42 -5.86 -40.55 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.33 Total: -1.77 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.39 Total: -0.71 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.31 Total: -38.24 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.19 Total: -21.25 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.69 -5.86 -40.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292555127.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.097 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds