Wall clock time and date at job start Sun Mar 29 2020 22:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00543 * 2 1 4 4 N 1.46500 * 109.47410 * 124.99658 * 3 2 1 5 5 C 1.46497 * 119.99724 * 270.00176 * 4 3 2 6 6 C 1.50700 * 109.47253 * 269.99631 * 5 4 3 7 7 H 1.08003 * 119.99790 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00170 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99939 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47091 * 60.00010 * 10 8 6 12 12 H 1.48499 * 109.47072 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47306 * 300.00088 * 10 8 6 14 14 C 1.34766 * 119.99865 * 89.99920 * 4 3 2 15 15 O 1.21281 * 120.00146 * 179.97438 * 14 4 3 16 16 C 1.50702 * 120.00269 * 0.02562 * 14 4 3 17 17 C 1.53840 * 113.66024 * 80.99799 * 16 14 4 18 18 C 1.51772 * 86.69146 * 89.81077 * 17 16 14 19 19 O 1.20761 * 135.75309 * 205.16017 * 18 17 16 20 20 C 1.51582 * 88.46571 * 25.08000 * 18 17 16 21 21 H 1.07996 * 120.00560 * 179.97438 * 1 2 3 22 22 H 1.08004 * 119.99764 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.99764 * 179.97438 * 2 1 3 24 24 H 1.09010 * 109.46487 * 4.99624 * 3 2 1 25 25 H 1.08997 * 109.47225 * 245.00315 * 3 2 1 26 26 H 1.09001 * 109.47521 * 30.00205 * 5 4 3 27 27 H 1.09001 * 109.47026 * 149.99811 * 5 4 3 28 28 H 0.96999 * 120.00281 * 179.97438 * 9 8 6 29 29 H 1.09002 * 112.88026 * 309.66550 * 16 14 4 30 30 H 1.08997 * 113.67238 * 204.24843 * 17 16 14 31 31 H 1.09009 * 113.66355 * 335.31495 * 17 16 14 32 32 H 1.09004 * 113.66715 * 220.46248 * 20 18 17 33 33 H 1.08995 * 113.67024 * 89.38510 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1315 5 6 2.5589 1.8649 2.4248 6 6 2.8444 3.3436 2.4803 7 1 3.3035 3.8370 1.6364 8 6 2.5194 4.0666 3.6085 9 7 1.9608 3.4657 4.6363 10 14 2.8727 5.8996 3.6770 11 1 2.1361 6.5868 2.5860 12 1 2.4330 6.4398 4.9885 13 1 4.3304 6.1294 3.5112 14 6 4.2497 0.8660 0.9825 15 8 5.0199 0.8886 1.9190 16 6 4.6973 0.3181 -0.3481 17 6 5.1070 1.4048 -1.3570 18 6 6.5089 1.2796 -0.7889 19 8 7.4766 1.9973 -0.7076 20 6 6.1672 -0.1355 -0.3662 21 1 -0.5401 -0.9352 -0.0004 22 1 -0.5400 0.9354 -0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6214 1.4025 -0.9314 26 1 1.4888 1.6967 2.5459 27 1 3.0989 1.3603 3.2260 28 1 1.7325 3.9743 5.4301 29 1 4.0068 -0.4199 -0.7565 30 1 5.0266 1.0890 -2.3971 31 1 4.6428 2.3731 -1.1697 32 1 6.5543 -0.4040 0.6168 33 1 6.3847 -0.8843 -1.1278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292555127.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:00 Heat of formation + Delta-G solvation = -47.478145 kcal Electronic energy + Delta-G solvation = -16932.618240 eV Core-core repulsion = 14152.242470 eV Total energy + Delta-G solvation = -2780.375770 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78595 -39.87259 -37.36309 -36.85399 -35.08489 -33.65647 -29.92692 -27.11036 -27.00650 -26.41804 -24.07575 -21.27128 -20.65643 -19.30555 -18.63750 -17.97037 -17.38495 -16.99060 -16.57161 -16.15724 -16.06665 -15.87231 -15.31540 -14.51105 -14.34458 -14.12298 -13.47583 -13.34294 -13.10696 -12.86985 -12.83635 -12.63256 -12.47180 -12.27371 -12.21149 -12.13085 -11.71074 -10.67706 -10.66014 -10.43528 -10.25100 -9.49632 -8.25768 -6.40307 0.91844 1.32562 1.36915 1.37366 1.44222 1.70829 2.30302 2.45061 2.84363 3.04006 3.37442 3.62316 3.77280 4.11968 4.17642 4.30440 4.46171 4.50903 4.62472 4.76634 4.87766 4.92851 4.96008 5.07947 5.11627 5.21306 5.49547 5.74962 5.77231 5.99120 6.03167 6.47222 6.65912 6.75190 7.24667 7.42766 8.81142 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.009098 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.386487 B = 3076.998070 C = 4087.331775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.181 4.181 3 C 0.129 3.871 4 N -0.592 5.592 5 C 0.264 3.736 6 C -0.544 4.544 7 H 0.051 0.949 8 C 0.009 3.991 9 N -0.926 5.926 10 Si 0.962 3.038 11 H -0.257 1.257 12 H -0.276 1.276 13 H -0.283 1.283 14 C 0.501 3.499 15 O -0.599 6.599 16 C -0.119 4.119 17 C -0.160 4.160 18 C 0.340 3.660 19 O -0.481 6.481 20 C -0.163 4.163 21 H 0.116 0.884 22 H 0.094 0.906 23 H 0.124 0.876 24 H 0.073 0.927 25 H 0.115 0.885 26 H 0.024 0.976 27 H -0.006 1.006 28 H 0.267 0.733 29 H 0.166 0.834 30 H 0.187 0.813 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 -8.913 -16.730 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C 0.008 3.992 4 N -0.321 5.321 5 C 0.142 3.858 6 C -0.583 4.583 7 H 0.070 0.930 8 C -0.190 4.190 9 N -0.566 5.566 10 Si 0.787 3.213 11 H -0.181 1.181 12 H -0.201 1.201 13 H -0.209 1.209 14 C 0.290 3.710 15 O -0.481 6.481 16 C -0.140 4.140 17 C -0.198 4.198 18 C 0.217 3.783 19 O -0.356 6.356 20 C -0.201 4.201 21 H 0.135 0.865 22 H 0.112 0.888 23 H 0.141 0.859 24 H 0.091 0.909 25 H 0.133 0.867 26 H 0.042 0.958 27 H 0.013 0.987 28 H 0.076 0.924 29 H 0.184 0.816 30 H 0.204 0.796 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.767 -8.466 -16.008 18.125 hybrid contribution 0.046 1.081 1.107 1.548 sum -0.721 -7.385 -14.901 16.647 Atomic orbital electron populations 1.24051 0.95779 1.02724 0.98568 1.23356 0.96657 0.98373 1.01603 1.20926 0.92651 0.96467 0.89171 1.48161 1.11677 1.59190 1.13120 1.18685 0.93955 0.92507 0.80638 1.21673 1.40655 0.94592 1.01372 0.93032 1.25821 0.94677 1.03586 0.94921 1.70033 1.42711 1.38123 1.05698 0.85549 0.78294 0.79360 0.78128 1.18142 1.20119 1.20858 1.21056 0.81576 0.77668 0.90739 1.90671 1.54217 1.58602 1.44613 1.22105 0.99212 1.01022 0.91635 1.24219 0.92730 0.99876 1.02944 1.26590 0.87442 0.91095 0.73138 1.90372 1.37235 1.57637 1.50368 1.24091 0.93039 0.97701 1.05226 0.86535 0.88751 0.85867 0.90884 0.86682 0.95824 0.98738 0.92363 0.81628 0.79600 0.89869 0.90460 0.80382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 14.32 67.78 0.97 -2.74 16 2 C -0.18 -4.19 9.61 25.64 0.25 -3.94 16 3 C 0.13 3.67 5.56 85.63 0.48 4.15 16 4 N -0.59 -24.16 2.44 -830.51 -2.03 -26.19 16 5 C 0.26 14.23 5.16 85.63 0.44 14.67 16 6 C -0.54 -31.73 9.39 25.60 0.24 -31.49 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 8 C 0.01 0.54 5.46 84.66 0.46 1.00 16 9 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 10 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 11 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 14 C 0.50 19.94 6.93 87.66 0.61 20.55 16 15 O -0.60 -31.31 15.41 -3.03 -0.05 -31.36 16 16 C -0.12 -2.74 3.01 -11.03 -0.03 -2.78 16 17 C -0.16 -3.16 6.69 30.47 0.20 -2.95 16 18 C 0.34 9.93 8.82 29.67 0.26 10.19 16 19 O -0.48 -18.71 17.99 -1.45 -0.03 -18.73 16 20 C -0.16 -3.62 7.44 30.41 0.23 -3.39 16 21 H 0.12 1.99 8.06 -2.91 -0.02 1.97 16 22 H 0.09 2.10 7.84 -2.91 -0.02 2.07 16 23 H 0.12 2.42 7.86 -2.91 -0.02 2.39 16 24 H 0.07 2.28 7.72 -2.38 -0.02 2.26 16 25 H 0.12 2.32 5.88 -2.39 -0.01 2.31 16 26 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 27 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.17 2.23 7.49 -2.39 -0.02 2.21 16 30 H 0.19 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 2.00 7.90 -2.38 -0.02 1.98 16 32 H 0.08 2.26 7.40 -2.39 -0.02 2.25 16 33 H 0.18 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -83.36 290.42 5.41 -77.95 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.10 Total: 3.59 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 4.10 Total: 3.27 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.74 Total: -82.56 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.07 Total: -50.09 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -83.36 5.41 -77.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292555127.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.473 kcal (2) G-P(sol) polarization free energy of solvation -83.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds