Wall clock time and date at job start Sun Mar 29 2020 21:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.05329 * 2 1 4 4 C 1.53998 * 109.91570 * 121.18895 * 2 1 3 5 5 H 1.08999 * 110.41673 * 359.12253 * 4 2 1 6 6 C 1.52999 * 110.33002 * 236.94981 * 4 2 1 7 7 F 1.39899 * 109.46926 * 303.74011 * 6 4 2 8 8 F 1.39903 * 109.47112 * 63.73841 * 6 4 2 9 9 F 1.39900 * 109.47189 * 183.74201 * 6 4 2 10 10 C 1.54619 * 105.04607 * 118.05723 * 4 2 1 11 11 C 1.54948 * 102.99831 * 338.06178 * 10 4 2 12 12 N 1.47488 * 109.91502 * 238.81083 * 2 1 3 13 13 C 1.36934 * 127.03526 * 86.12022 * 12 2 1 14 14 H 1.07999 * 120.00148 * 17.25531 * 13 12 2 15 15 C 1.38810 * 119.99945 * 197.25612 * 13 12 2 16 16 N 1.31624 * 120.00159 * 9.18950 * 15 13 12 17 17 Si 1.86794 * 120.00048 * 189.19315 * 15 13 12 18 18 H 1.48500 * 109.47555 * 59.99658 * 17 15 13 19 19 H 1.48507 * 109.47373 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47150 * 299.99626 * 17 15 13 21 21 H 1.09000 * 109.47241 * 298.80626 * 1 2 3 22 22 H 1.08994 * 109.47374 * 58.81143 * 1 2 3 23 23 H 1.09003 * 109.46991 * 178.81251 * 1 2 3 24 24 H 1.09007 * 109.46905 * 186.73063 * 3 2 1 25 25 H 1.09000 * 109.47468 * 306.72473 * 3 2 1 26 26 H 1.08998 * 109.47461 * 66.73052 * 3 2 1 27 27 H 1.08994 * 110.74102 * 96.48945 * 10 4 2 28 28 H 1.09003 * 110.74157 * 219.63501 * 10 4 2 29 29 H 1.08998 * 110.66093 * 155.90903 * 11 10 4 30 30 H 1.09001 * 110.66011 * 279.02193 * 11 10 4 31 31 H 0.97002 * 120.00253 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0546 -0.7498 1.2386 5 1 1.2238 -1.1017 1.8502 6 6 2.9713 0.1581 2.0609 7 9 4.0115 0.6268 1.2513 8 9 2.2361 1.2432 2.5501 9 9 3.5045 -0.5653 3.1330 10 6 2.8516 -1.9486 0.6744 11 6 2.2633 -2.1194 -0.7489 12 7 2.0324 -0.7181 -1.1863 13 6 2.2438 -0.1998 -2.4359 14 1 2.3103 0.8694 -2.5729 15 6 2.3726 -1.0486 -3.5267 16 7 2.1135 -2.3324 -3.3958 17 14 2.9136 -0.3689 -5.1803 18 1 4.2573 0.2490 -5.0460 19 1 2.9735 -1.4716 -6.1732 20 1 1.9408 0.6562 -5.6365 21 1 -0.3634 0.4952 0.9005 22 1 -0.3634 0.5321 -0.8791 23 1 -0.3633 -1.0275 -0.0213 24 1 3.1380 1.4286 -0.1205 25 1 1.6020 1.9893 -0.8237 26 1 1.7979 1.9178 0.9440 27 1 3.9156 -1.7168 0.6270 28 1 2.6792 -2.8429 1.2732 29 1 2.9786 -2.6174 -1.4034 30 1 1.3241 -2.6713 -0.7131 31 1 2.2038 -2.9256 -4.1579 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306544356.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:53 Heat of formation + Delta-G solvation = -121.463107 kcal Electronic energy + Delta-G solvation = -18642.470495 eV Core-core repulsion = 15317.029756 eV Total energy + Delta-G solvation = -3325.440739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.87916 -47.32718 -47.20566 -38.30221 -32.90979 -31.47608 -29.83969 -27.15848 -26.16654 -23.95442 -22.95784 -20.54145 -19.10724 -18.13546 -17.89843 -16.51860 -16.29381 -15.01838 -14.68540 -14.29387 -14.05296 -13.83816 -13.76906 -13.62650 -13.34733 -12.74431 -12.41135 -12.19206 -12.03076 -11.64866 -11.25207 -11.05686 -10.89606 -10.61542 -10.48384 -10.30777 -10.02450 -9.92314 -9.86283 -9.60265 -8.63729 -6.86420 -5.79601 -3.13938 3.19447 3.39266 3.44274 3.45151 4.25036 4.40319 4.49448 4.51662 5.15425 5.30607 5.38250 5.56849 5.64195 5.94154 6.00482 6.21961 6.28197 6.33600 6.37027 6.59553 6.61961 6.66644 6.96322 7.10475 7.30872 7.51181 7.73223 8.20820 9.11518 9.75066 10.48092 11.34659 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.036932 B = 0.009000 C = 0.008759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.958364 B = 3110.359788 C = 3195.796654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.187 3.813 3 C -0.200 4.200 4 C -0.142 4.142 5 H 0.108 0.892 6 C 0.460 3.540 7 F -0.172 7.172 8 F -0.185 7.185 9 F -0.192 7.192 10 C -0.139 4.139 11 C 0.163 3.837 12 N -0.580 5.580 13 C -0.221 4.221 14 H 0.076 0.924 15 C -0.004 4.004 16 N -0.916 5.916 17 Si 0.910 3.090 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.284 1.284 21 H 0.039 0.961 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.027 0.973 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 2.779 10.098 10.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.098 3.902 3 C -0.257 4.257 4 C -0.162 4.162 5 H 0.126 0.874 6 C 0.406 3.594 7 F -0.153 7.153 8 F -0.167 7.167 9 F -0.174 7.174 10 C -0.178 4.178 11 C 0.038 3.962 12 N -0.303 5.303 13 C -0.350 4.350 14 H 0.094 0.906 15 C -0.201 4.201 16 N -0.562 5.562 17 Si 0.740 3.260 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.211 1.211 21 H 0.058 0.942 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.045 0.955 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.098 2.723 9.843 10.213 hybrid contribution 0.274 0.440 -0.725 0.891 sum 0.372 3.163 9.117 9.658 Atomic orbital electron populations 1.22262 0.96998 1.01262 1.00343 1.20157 0.92360 0.91469 0.86252 1.23091 1.03722 0.96659 1.02274 1.23540 0.97871 0.96783 0.98033 0.87424 1.20630 0.80654 0.79908 0.78193 1.93099 1.60847 1.89191 1.72163 1.93022 1.77100 1.57758 1.88771 1.93131 1.87754 1.77755 1.58729 1.23017 0.99538 0.94652 1.00618 1.21740 0.98251 0.87318 0.88920 1.44903 1.74245 1.05683 1.05477 1.18902 1.42246 0.91909 0.81903 0.90616 1.24880 1.01667 0.95975 0.97609 1.69889 1.53253 1.02869 1.30220 0.86238 0.78693 0.77628 0.83425 1.21091 1.21641 1.21068 0.94201 0.92337 0.93013 0.90117 0.92548 0.91623 0.91229 0.91343 0.89252 0.95453 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.62 37.16 0.32 -2.45 16 2 C 0.19 3.74 0.98 -130.76 -0.13 3.61 16 3 C -0.20 -3.82 6.57 37.16 0.24 -3.58 16 4 C -0.14 -2.45 2.65 -89.25 -0.24 -2.69 16 5 H 0.11 1.63 7.69 -51.93 -0.40 1.23 16 6 C 0.46 7.64 2.31 37.16 0.09 7.72 16 7 F -0.17 -3.13 13.38 2.25 0.03 -3.10 16 8 F -0.19 -2.95 14.41 2.25 0.03 -2.91 16 9 F -0.19 -3.03 17.09 2.25 0.04 -2.99 16 10 C -0.14 -2.54 6.31 -24.85 -0.16 -2.70 16 11 C 0.16 3.72 5.87 -1.85 -0.01 3.71 16 12 N -0.58 -14.05 2.90 -154.27 -0.45 -14.50 16 13 C -0.22 -5.94 9.70 -15.06 -0.15 -6.09 16 14 H 0.08 2.00 6.98 -52.49 -0.37 1.63 16 15 C 0.00 -0.12 5.38 -17.43 -0.09 -0.21 16 16 N -0.92 -26.09 10.90 55.49 0.60 -25.49 16 17 Si 0.91 21.76 29.56 -169.99 -5.03 16.73 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.08 1.64 5.61 -51.93 -0.29 1.35 16 25 H 0.06 1.10 7.62 -51.93 -0.40 0.71 16 26 H 0.07 1.12 5.17 -51.93 -0.27 0.85 16 27 H 0.07 1.30 7.38 -51.93 -0.38 0.92 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.09 2.29 6.65 -51.93 -0.35 1.94 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 254.06 15.07 3.83 3.83 Total: -1.00 -27.91 254.06 -4.76 -32.66 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -3.70 Total: -1.56 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.12 Total: -2.66 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.16 Total: -39.99 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 0.10 Total: -9.01 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.91 -4.76 -32.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306544356.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.798 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds