Wall clock time and date at job start Sun Mar 29 2020 21:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.05329 * 2 1 4 4 C 1.53998 * 109.91570 * 121.18895 * 2 1 3 5 5 H 1.08999 * 110.41673 * 359.12253 * 4 2 1 6 6 C 1.52999 * 110.33002 * 236.94981 * 4 2 1 7 7 F 1.39899 * 109.46926 * 303.74011 * 6 4 2 8 8 F 1.39903 * 109.47112 * 63.73841 * 6 4 2 9 9 F 1.39900 * 109.47189 * 183.74201 * 6 4 2 10 10 C 1.54619 * 105.04607 * 118.05723 * 4 2 1 11 11 C 1.54948 * 102.99831 * 338.06178 * 10 4 2 12 12 N 1.47488 * 109.91502 * 238.81083 * 2 1 3 13 13 C 1.36934 * 127.03526 * 86.12022 * 12 2 1 14 14 H 1.07999 * 120.00148 * 17.25531 * 13 12 2 15 15 C 1.38810 * 119.99945 * 197.25612 * 13 12 2 16 16 N 1.31624 * 120.00159 * 9.18950 * 15 13 12 17 17 Si 1.86794 * 120.00048 * 189.19315 * 15 13 12 18 18 H 1.48500 * 109.47555 * 59.99658 * 17 15 13 19 19 H 1.48507 * 109.47373 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47150 * 299.99626 * 17 15 13 21 21 H 1.09000 * 109.47241 * 298.80626 * 1 2 3 22 22 H 1.08994 * 109.47374 * 58.81143 * 1 2 3 23 23 H 1.09003 * 109.46991 * 178.81251 * 1 2 3 24 24 H 1.09007 * 109.46905 * 186.73063 * 3 2 1 25 25 H 1.09000 * 109.47468 * 306.72473 * 3 2 1 26 26 H 1.08998 * 109.47461 * 66.73052 * 3 2 1 27 27 H 1.08994 * 110.74102 * 96.48945 * 10 4 2 28 28 H 1.09003 * 110.74157 * 219.63501 * 10 4 2 29 29 H 1.08998 * 110.66093 * 155.90903 * 11 10 4 30 30 H 1.09001 * 110.66011 * 279.02193 * 11 10 4 31 31 H 0.97002 * 120.00253 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0546 -0.7498 1.2386 5 1 1.2238 -1.1017 1.8502 6 6 2.9713 0.1581 2.0609 7 9 4.0115 0.6268 1.2513 8 9 2.2361 1.2432 2.5501 9 9 3.5045 -0.5653 3.1330 10 6 2.8516 -1.9486 0.6744 11 6 2.2633 -2.1194 -0.7489 12 7 2.0324 -0.7181 -1.1863 13 6 2.2438 -0.1998 -2.4359 14 1 2.3103 0.8694 -2.5729 15 6 2.3726 -1.0486 -3.5267 16 7 2.1135 -2.3324 -3.3958 17 14 2.9136 -0.3689 -5.1803 18 1 4.2573 0.2490 -5.0460 19 1 2.9735 -1.4716 -6.1732 20 1 1.9408 0.6562 -5.6365 21 1 -0.3634 0.4952 0.9005 22 1 -0.3634 0.5321 -0.8791 23 1 -0.3633 -1.0275 -0.0213 24 1 3.1380 1.4286 -0.1205 25 1 1.6020 1.9893 -0.8237 26 1 1.7979 1.9178 0.9440 27 1 3.9156 -1.7168 0.6270 28 1 2.6792 -2.8429 1.2732 29 1 2.9786 -2.6174 -1.4034 30 1 1.3241 -2.6713 -0.7131 31 1 2.2038 -2.9256 -4.1579 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306544356.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:53 Heat of formation + Delta-G solvation = -136.903958 kcal Electronic energy + Delta-G solvation = -18643.140060 eV Core-core repulsion = 15317.029756 eV Total energy + Delta-G solvation = -3326.110305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.19980 -48.60324 -48.55646 -39.92568 -34.83591 -33.04534 -31.66069 -28.77375 -27.74030 -25.80167 -24.44593 -22.20142 -20.71745 -19.47455 -19.24421 -18.26856 -17.83966 -16.85052 -16.19012 -15.94030 -15.50642 -15.36609 -15.13664 -15.04418 -14.67444 -14.34685 -13.98455 -13.75425 -13.70140 -13.26832 -12.94920 -12.78476 -12.66533 -12.26471 -12.09819 -12.01628 -11.76173 -11.55647 -11.50813 -11.37982 -10.64759 -8.81255 -7.86155 -5.20085 1.47236 1.49197 1.55080 1.85359 2.50393 2.89394 3.05115 3.17296 3.36451 3.55775 3.84890 3.95994 4.19775 4.41086 4.45678 4.70289 4.80643 4.82144 4.83716 5.05731 5.07946 5.14938 5.42919 5.48952 5.55167 5.64269 5.70834 6.26070 7.08689 7.76907 8.50840 9.27135 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.036932 B = 0.009000 C = 0.008759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.958364 B = 3110.359788 C = 3195.796654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.175 3.825 3 C -0.193 4.193 4 C -0.136 4.136 5 H 0.140 0.860 6 C 0.467 3.533 7 F -0.183 7.183 8 F -0.178 7.178 9 F -0.183 7.183 10 C -0.126 4.126 11 C 0.164 3.836 12 N -0.602 5.602 13 C -0.224 4.224 14 H 0.074 0.926 15 C -0.059 4.059 16 N -0.944 5.944 17 Si 0.967 3.033 18 H -0.281 1.281 19 H -0.295 1.295 20 H -0.279 1.279 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 3.492 11.732 12.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.087 3.913 3 C -0.250 4.250 4 C -0.156 4.156 5 H 0.157 0.843 6 C 0.413 3.587 7 F -0.165 7.165 8 F -0.159 7.159 9 F -0.165 7.165 10 C -0.165 4.165 11 C 0.039 3.961 12 N -0.325 5.325 13 C -0.353 4.353 14 H 0.092 0.908 15 C -0.253 4.253 16 N -0.592 5.592 17 Si 0.796 3.204 18 H -0.208 1.208 19 H -0.221 1.221 20 H -0.205 1.205 21 H 0.094 0.906 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.143 3.460 11.508 12.018 hybrid contribution 0.333 0.250 -1.170 1.242 sum 0.190 3.710 10.339 10.986 Atomic orbital electron populations 1.22164 0.95738 1.01069 1.01178 1.20437 0.93291 0.91821 0.85747 1.23040 1.02659 0.96257 1.03084 1.23505 0.98744 0.95996 0.97340 0.84256 1.20412 0.80213 0.79894 0.78179 1.93089 1.61410 1.89342 1.72651 1.93030 1.76870 1.57406 1.88586 1.93154 1.87604 1.77546 1.58163 1.22856 0.98932 0.96670 0.98006 1.21565 0.96931 0.86574 0.91031 1.45122 1.74915 1.06578 1.05877 1.19157 1.40886 0.91955 0.83318 0.90780 1.25566 1.02761 0.96349 1.00603 1.70056 1.54929 1.03753 1.30487 0.85322 0.78327 0.76838 0.79867 1.20779 1.22145 1.20462 0.90622 0.94325 0.93588 0.91433 0.93747 0.89194 0.91846 0.88008 0.92810 0.96812 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.62 71.98 0.62 -4.36 16 2 C 0.18 6.69 0.98 3.75 0.00 6.69 16 3 C -0.19 -7.04 6.57 71.98 0.47 -6.57 16 4 C -0.14 -4.27 2.65 -9.91 -0.03 -4.29 16 5 H 0.14 3.56 7.69 -2.39 -0.02 3.54 16 6 C 0.47 13.98 2.31 71.98 0.17 14.14 16 7 F -0.18 -6.32 13.38 44.97 0.60 -5.72 16 8 F -0.18 -4.97 14.41 44.97 0.65 -4.32 16 9 F -0.18 -5.11 17.09 44.97 0.77 -4.34 16 10 C -0.13 -4.34 6.31 31.81 0.20 -4.14 16 11 C 0.16 7.53 5.87 86.64 0.51 8.03 16 12 N -0.60 -29.09 2.90 -641.98 -1.86 -30.95 16 13 C -0.22 -12.13 9.70 84.03 0.82 -11.32 16 14 H 0.07 3.94 6.98 -2.91 -0.02 3.92 16 15 C -0.06 -3.28 5.38 84.86 0.46 -2.82 16 16 N -0.94 -55.16 10.90 21.65 0.24 -54.93 16 17 Si 0.97 45.37 29.56 68.60 2.03 47.40 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.07 2.66 5.61 -2.38 -0.01 2.64 16 25 H 0.04 1.69 7.62 -2.39 -0.02 1.67 16 26 H 0.09 2.81 5.17 -2.39 -0.01 2.80 16 27 H 0.06 2.27 7.38 -2.39 -0.02 2.25 16 28 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.05 2.83 6.65 -2.39 -0.02 2.81 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -60.02 254.06 6.78 -53.24 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.14 Total: 4.25 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 3.22 Total: -4.63 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.62 Total: -85.88 kcal Atomic # 9 Polarization: -16.40 SS G_CDS: 2.02 Total: -14.38 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -60.02 6.78 -53.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306544356.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.666 kcal (2) G-P(sol) polarization free energy of solvation -60.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds