Wall clock time and date at job start Sun Mar 29 2020 21:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.87414 * 2 1 4 4 C 1.54324 * 109.88282 * 121.01679 * 2 1 3 5 5 H 1.08997 * 110.71905 * 215.76611 * 4 2 1 6 6 C 1.53006 * 110.71968 * 338.85805 * 4 2 1 7 7 F 1.39900 * 109.46764 * 57.55965 * 6 4 2 8 8 F 1.39897 * 109.47129 * 177.55944 * 6 4 2 9 9 F 1.39903 * 109.46814 * 297.56436 * 6 4 2 10 10 C 1.55152 * 103.10436 * 97.31171 * 4 2 1 11 11 C 1.55124 * 101.48521 * 35.28149 * 10 4 2 12 12 N 1.47026 * 109.88182 * 238.82235 * 2 1 3 13 13 C 1.36936 * 125.65078 * 59.56033 * 12 2 1 14 14 H 1.08007 * 119.99456 * 359.97438 * 13 12 2 15 15 C 1.38810 * 120.00201 * 179.97438 * 13 12 2 16 16 N 1.31613 * 119.99843 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47247 * 60.00501 * 17 15 13 19 19 H 1.48504 * 109.47314 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47438 * 300.00210 * 17 15 13 21 21 H 1.08993 * 109.47185 * 298.98798 * 1 2 3 22 22 H 1.09007 * 109.46875 * 58.98649 * 1 2 3 23 23 H 1.08999 * 109.47079 * 178.98151 * 1 2 3 24 24 H 1.09002 * 109.47119 * 181.01599 * 3 2 1 25 25 H 1.08998 * 109.47246 * 301.00883 * 3 2 1 26 26 H 1.08995 * 109.47508 * 61.01439 * 3 2 1 27 27 H 1.09000 * 111.00164 * 153.48859 * 10 4 2 28 28 H 1.09003 * 111.00461 * 277.34080 * 10 4 2 29 29 H 1.08999 * 110.41863 * 204.28705 * 11 10 4 30 30 H 1.09003 * 110.29369 * 82.08970 * 11 10 4 31 31 H 0.97001 * 119.99898 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 2.9639 -0.2790 1.6205 6 6 0.9837 -0.8017 2.3350 7 9 -0.1649 -1.4211 1.8308 8 9 1.4664 -1.5317 3.4265 9 9 0.6704 0.4986 2.7454 10 6 2.3553 -2.1691 0.6989 11 6 2.8568 -1.8509 -0.7342 12 7 2.0300 -0.7158 -1.1829 13 6 1.7713 -0.3828 -2.4857 14 1 1.1507 0.4718 -2.7116 15 6 2.3066 -1.1436 -3.5160 16 7 3.0624 -2.1853 -3.2407 17 14 1.9531 -0.6897 -5.2931 18 1 2.4538 0.6821 -5.5627 19 1 2.6353 -1.6523 -6.1950 20 1 0.4886 -0.7385 -5.5346 21 1 -0.3633 0.4980 0.8989 22 1 -0.3633 0.5295 -0.8808 23 1 -0.3633 -1.0275 -0.0183 24 1 3.1400 1.4312 -0.0182 25 1 1.6758 1.9605 -0.8808 26 1 1.7054 1.9499 0.8989 27 1 3.1316 -2.6573 1.2881 28 1 1.4501 -2.7756 0.6690 29 1 2.7088 -2.7101 -1.3884 30 1 3.9093 -1.5683 -0.7124 31 1 3.4362 -2.7171 -3.9606 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306544357.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:56 Heat of formation + Delta-G solvation = -123.158559 kcal Electronic energy + Delta-G solvation = -18578.415142 eV Core-core repulsion = 15252.900883 eV Total energy + Delta-G solvation = -3325.514259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.87270 -47.32550 -47.24112 -38.36067 -33.02909 -31.49763 -29.84672 -26.73306 -26.56323 -23.96703 -22.96761 -20.57384 -19.19683 -18.14966 -17.91295 -16.49145 -16.39398 -14.94791 -14.73814 -14.18774 -13.95104 -13.80727 -13.71135 -13.59300 -13.43117 -12.83637 -12.55959 -12.20708 -12.06259 -11.59916 -11.33215 -11.14334 -10.92111 -10.74868 -10.63349 -10.28322 -10.14078 -9.92325 -9.76242 -9.56610 -8.69239 -6.93321 -5.69523 -3.11177 3.15324 3.38948 3.43553 3.44346 4.19171 4.35451 4.47688 4.49292 5.15267 5.26819 5.42171 5.53050 5.58821 5.89640 6.01479 6.21136 6.25464 6.28259 6.38060 6.57396 6.60261 6.64307 6.90861 7.09768 7.41213 7.59551 7.78419 8.29625 9.17268 9.77933 10.40961 11.34861 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.042924 B = 0.008575 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.152097 B = 3264.401380 C = 3502.150999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.192 3.808 3 C -0.151 4.151 4 C -0.142 4.142 5 H 0.111 0.889 6 C 0.460 3.540 7 F -0.176 7.176 8 F -0.191 7.191 9 F -0.187 7.187 10 C -0.139 4.139 11 C 0.154 3.846 12 N -0.587 5.587 13 C -0.216 4.216 14 H 0.078 0.922 15 C -0.010 4.010 16 N -0.924 5.924 17 Si 0.914 3.086 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 H 0.044 0.956 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.017 0.983 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 2.210 9.748 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 C -0.210 4.210 4 C -0.162 4.162 5 H 0.129 0.871 6 C 0.406 3.594 7 F -0.158 7.158 8 F -0.173 7.173 9 F -0.169 7.169 10 C -0.178 4.178 11 C 0.030 3.970 12 N -0.310 5.310 13 C -0.344 4.344 14 H 0.096 0.904 15 C -0.206 4.206 16 N -0.572 5.572 17 Si 0.745 3.255 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.035 0.965 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.286 2.117 9.521 10.018 hybrid contribution -0.290 0.340 -0.659 0.796 sum -2.576 2.457 8.862 9.550 Atomic orbital electron populations 1.22856 0.96876 1.02652 1.00701 1.20120 0.92801 0.91125 0.85699 1.22241 1.00982 0.97131 1.00643 1.23599 0.96173 1.02751 0.93723 0.87063 1.20598 0.83209 0.72996 0.82573 1.93148 1.52932 1.83237 1.86436 1.93134 1.88071 1.78164 1.57910 1.93117 1.93851 1.38336 1.91555 1.23202 1.01796 0.92217 1.00554 1.22002 0.92268 0.93867 0.88886 1.44491 1.57006 1.29664 0.99882 1.18953 1.25483 1.09659 0.80300 0.90434 1.24757 0.99831 0.97949 0.98025 1.69744 1.37779 1.19303 1.30361 0.86154 0.77711 0.77383 0.84259 1.21245 1.21602 1.21162 0.93718 0.92701 0.91120 0.92907 0.92330 0.93773 0.91129 0.90959 0.86920 0.96498 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 6.93 37.16 0.26 -3.04 16 2 C 0.19 3.82 0.80 -130.84 -0.10 3.72 16 3 C -0.15 -2.78 8.45 37.16 0.31 -2.46 16 4 C -0.14 -2.48 2.45 -88.78 -0.22 -2.70 16 5 H 0.11 1.78 7.85 -51.93 -0.41 1.37 16 6 C 0.46 7.48 2.39 37.16 0.09 7.57 16 7 F -0.18 -3.02 12.51 2.25 0.03 -2.99 16 8 F -0.19 -2.97 17.17 2.25 0.04 -2.93 16 9 F -0.19 -2.97 15.23 2.25 0.03 -2.94 16 10 C -0.14 -2.56 6.38 -24.47 -0.16 -2.72 16 11 C 0.15 3.58 5.89 -2.41 -0.01 3.56 16 12 N -0.59 -14.17 2.88 -155.24 -0.45 -14.62 16 13 C -0.22 -5.73 9.44 -15.06 -0.14 -5.88 16 14 H 0.08 2.01 7.74 -52.48 -0.41 1.60 16 15 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 16 N -0.92 -26.05 10.09 55.49 0.56 -25.49 16 17 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H 0.04 0.77 5.56 -51.93 -0.29 0.48 16 22 H 0.05 1.09 7.93 -51.92 -0.41 0.67 16 23 H 0.07 1.42 6.42 -51.93 -0.33 1.08 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 26 H 0.04 0.71 7.71 -51.93 -0.40 0.31 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.35 7.41 -51.93 -0.38 0.96 16 29 H 0.11 2.95 5.87 -51.93 -0.31 2.64 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 254.25 15.07 3.83 3.83 Total: -1.00 -27.43 254.25 -4.81 -32.23 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -3.76 Total: -1.44 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.32 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.11 Total: -40.11 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 0.10 Total: -8.86 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.43 -4.81 -32.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306544357.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.925 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds